jgi.p|Nanoce1779_2|571076, mRNA_12009 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571076
Unique NamemRNA_12009
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length447
Alignment locationscaffold_204:11293..11739 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571162
TrackFilteredModels2
ProteinId571076
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:11293..11739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571076gene_12009Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12009CDS_12009Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571076mRNA_12009-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12009 ID=mRNA_12009|Name=jgi.p|Nanoce1779_2|571076|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
ATGAGACAAGTCCAAAGCTTCCTAGAGGGAGCGAAAAAGGGAGGGAAGCG
ACGCAAGGTGGTCGTGTTGGGGGGAGGGATGGATGGGTTACTAATTGCTC
TGTGTGCGAATAATATGGCTTCGAATAAAATGGTAAGTTTACTGGAGATC
GATGTACCGGAGGTAGTGACCCGAAAGGAGGCGGCTTTGCGGGCATGGAT
GGAGAGGGGGAAGGAGGGAGGAAAGGAGGACCTGGTAGGTGCATTCATGA
GGGAGAGCGGGAAATATGCACTGAAAGTGGCAGATCTGAGAGACTTGGAG
AGCCTGAACAAGGCATTGGAAAAGGTGGAGATAGAAGAGGAGAAGGAGGG
GGAGGAGGAGATGCTCTTCATCTTGGAGGCTGTCTTAGGGTACCTGCAGC
CAAACGAAGTGGAGCGATTGCTCAGGTGCGTCCTGTCGCCTAAGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|571076

>mRNA_12009-protein ID=mRNA_12009-protein|Name=jgi.p|Nanoce1779_2|571076|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MRQVQSFLEGAKKGGKRRKVVVLGGGMDGLLIALCANNMASNKMVSLLEI
DVPEVVTRKEAALRAWMERGKEGGKEDLVGAFMRESGKYALKVADLRDLE
SLNKALEKVEIEEEKEGEEEMLFILEAVLGYLQPNEVERLLRCVLSPK*
back to top

mRNA from alignment at scaffold_204:11293..11739-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12009 ID=mRNA_12009|Name=jgi.p|Nanoce1779_2|571076|organism=Nannochloropsis oceanica|type=mRNA|length=447bp|location=Sequence derived from alignment at scaffold_204:11293..11739- (Nannochloropsis oceanica)
ATGAGACAAGTCCAAAGCTTCCTAGAGGGAGCGAAAAAGGGAGGGAAGCG
ACGCAAGGTGGTCGTGTTGGGGGGAGGGATGGATGGGTTACTAATTGCTC
TGTGTGCGAATAATATGGCTTCGAATAAAATGGTAAGTTTACTGGAGATC
GATGTACCGGAGGTAGTGACCCGAAAGGAGGCGGCTTTGCGGGCATGGAT
GGAGAGGGGGAAGGAGGGAGGAAAGGAGGACCTGGTAGGTGCATTCATGA
GGGAGAGCGGGAAATATGCACTGAAAGTGGCAGATCTGAGAGACTTGGAG
AGCCTGAACAAGGCATTGGAAAAGGTGGAGATAGAAGAGGAGAAGGAGGG
GGAGGAGGAGATGCTCTTCATCTTGGAGGCTGTCTTAGGGTACCTGCAGC
CAAACGAAGTGGAGCGATTGCTCAGGTGCGTCCTGTCGCCTAAGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_204:11293..11739-

>mRNA_12009 ID=mRNA_12009|Name=jgi.p|Nanoce1779_2|571076|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_204:11293..11739- (Nannochloropsis oceanica)
ATGAGACAAGTCCAAAGCTTCCTAGAGGGAGCGAAAAAGGGAGGGAAGCG
ACGCAAGGTGGTCGTGTTGGGGGGAGGGATGGATGGGTTACTAATTGCTC
TGTGTGCGAATAATATGGCTTCGAATAAAATGGTAAGTTTACTGGAGATC
GATGTACCGGAGGTAGTGACCCGAAAGGAGGCGGCTTTGCGGGCATGGAT
GGAGAGGGGGAAGGAGGGAGGAAAGGAGGACCTGGTAGGTGCATTCATGA
GGGAGAGCGGGAAATATGCACTGAAAGTGGCAGATCTGAGAGACTTGGAG
AGCCTGAACAAGGCATTGGAAAAGGTGGAGATAGAAGAGGAGAAGGAGGG
GGAGGAGGAGATGCTCTTCATCTTGGAGGCTGTCTTAGGGTACCTGCAGC
CAAACGAAGTGGAGCGATTGCTCAGGTGCGTCCTGTCGCCTAAGTGA
back to top
Synonyms
Publications