jgi.p|Nanoce1779_2|620152, mRNA_12015 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|620152
Unique NamemRNA_12015
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length641
Alignment locationscaffold_204:24032..24685 -

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Properties
Property NameValue
TranscriptId620238
TrackFilteredModels2
ProteinId620152
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:24032..24685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|620152gene_12015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|620152mRNA_12015-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12015CDS_12015Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12015 ID=mRNA_12015|Name=jgi.p|Nanoce1779_2|620152|organism=Nannochloropsis oceanica|type=mRNA|length=641bp
ACAGCAGCACCACCACCACCACCACCACCAGACAACAACAACACAACAAC
ACAGCAGCAATAACGCATGGGCCTCGTCAAATGCGGCGGCCTCCCCCTCA
TCCTCCTCCTCTGCCTTCTTCATTCCCGCGTTTCTTCCCTCCTTTCTTTC
TTCACTTCCTTCCCACTTCCTCTACACGCGCCTCCTCCCCGCTCCTTCTA
TTTACCTTCTTCTCATCTCCATGCCACACAACAGCACAGAAGCAGCTGCA
ACAGCAACAGCTGCCCTGCACTACTCCTCCCCCCTCCTTCCTCCCTTCCG
CCTCTTCCTCCTTCTCGTCCCCTTCCATCGCCTCCTCCTCCTCCCTCTCT
TATCAAGCCCCCCCCCCACCAGTTCAGAGCACCCTCAGCATACTCCCACC
ACCATTTAATATCGCACTCCCCCCTTCCCGTCCCTCCTTTTCTCCCTCCC
TCTTCCTTCTCCTCGTCCTCCTCCCTCCCCTCATCCGCTTCCTTTCCGTC
TACCTCTGCTCTCGCCGCGCCGCGTCTCCCCTTCCCTTTGAACGTGAAAG
GAGGAAACAGTGATGTGAGTACCCGACCAGGAGGGGGGAAGGGGGGGAAG
GGGGGTGGGGGGGCAGTTGACTCTCGGGCTCTGCCGATTGT
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protein sequence of jgi.p|Nanoce1779_2|620152

>mRNA_12015-protein ID=mRNA_12015-protein|Name=jgi.p|Nanoce1779_2|620152|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGLVKCGGLPLILLLCLLHSRVSSLLSFFTSFPLPLHAPPPRSFYLPSSH
LHATQQHRSSCNSNSCPALLLPPPSSLPPLPPSRPLPSPPPPPSLIKPPP
HQFRAPSAYSHHHLISHSPLPVPPFLPPSSFSSSSSLPSSASFPSTSALA
APRLPFPL
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mRNA from alignment at scaffold_204:24032..24685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12015 ID=mRNA_12015|Name=jgi.p|Nanoce1779_2|620152|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at scaffold_204:24032..24685- (Nannochloropsis oceanica)
ACAGCAGCACCACCACCACCACCACCACCAGACAACAACAACACAACAAC
ACAGCAGCAATAACGCATGGGCCTCGTCAAATGCGGCGGCCTCCCCCTCA
TCCTCCTCCTCTGCCTTCTTCATTCCCGCGTTTCTTCCCTCCTTTCTTTC
TTCACTTCCTTCCCACTTCCTCTACACGCGCCTCCTCCCCGCTCCTTCTA
TTTACCTTCTTCTCATCTCCATGCCACACAACAGCACAGAAGCAGCTGCA
ACAGCAACAGCTGCCCTGCACTACTCCTCCCCCCTCCTTCCTCCCTTCCG
CCTCTTCCTCCTTCTCGTCCCCTTCCATCGCCTCCTCCTCCTCCCTCTCT
TATCAAGCCCCCCCCCCACCAGTTCAGAGCACCCTCAGCATACTCCCACC
ACCATTTAATATCGCACTCCCCCCGCCCCGCCCCCCCTTCCCGTCCCTCC
TTTTCTCCCTCCCTCTTCCTTCTCCTCGTCCTCCTCCCTCCCCTCATCCG
CTTCCTTTCCGTCTACCTCTGCTCTCGCCGCGCCGCGTCTCCCCTTCCCT
TTGAACGTGAAAGGAGGAAACAGTGATGTGAGTACCCGACCAGGAGGGGG
GAAGGGGGGGAAGGGGGGTGGGGGGGCAGTTGACTCTCGGGCTCTGCCGA
TTGT
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Coding sequence (CDS) from alignment at scaffold_204:24032..24685-

>mRNA_12015 ID=mRNA_12015|Name=jgi.p|Nanoce1779_2|620152|organism=Nannochloropsis oceanica|type=CDS|length=950bp|location=Sequence derived from alignment at scaffold_204:24032..24685- (Nannochloropsis oceanica)
CCCCCCTTCCCGTCCCTCCTTTTCTCCCTCCCTCTTCCTTCTCCTCGTCC
TCCTCCCTCCCCTCATCCGCTTCCTTTCCGTCTACCTCTGCTCTCGCCGC
GCCGCGTCTCCCCTTCCCTTTGAATGGGCCTCGTCAAATGCGGCGGCCTC
CCCCTCATCCTCCTCCTCTGCCTTCTTCATTCCCGCGTTTCTTCCCTCCT
TTCTTTCTTCACTTCCTTCCCACTTCCTCTACACGCGCCTCCTCCCCGCT
CCTTCTATTTACCTTCTTCTCATCTCCATGCCACACAACAGCACAGAAGC
AGCTGCAACAGCAACAGCTGCCCTGCACTACTCCTCCCCCCTCCTTCCTC
CCTTCCGCCTCTTCCTCCTTCTCGTCCCCTTCCATCGCCTCCTCCTCCTC
CCTCTCTTATCAAGCCCCCCCCCCACCAGTTCAGAGCACCCTCAGCATAC
TCCCACCACCATTTAATATCGCACTCCCCCCTTCCCGTCCCTCCTTTTCT
CCCTCCCTCTTCCTTCTCCTCGTCCTCCTCCCTCCCCTCATCCGCTTCCT
TTCCGTCTACCTCTGCTCTCGCCGCGCCGCGTCTCCCCTTCCCTTTGAAT
GGGCCTCGTCAAATGCGGCGGCCTCCCCCTCATCCTCCTCCTCTGCCTTC
TTCATTCCCGCGTTTCTTCCCTCCTTTCTTTCTTCACTTCCTTCCCACTT
CCTCTACACGCGCCTCCTCCCCGCTCCTTCTATTTACCTTCTTCTCATCT
CCATGCCACACAACAGCACAGAAGCAGCTGCAACAGCAACAGCTGCCCTG
CACTACTCCTCCCCCCTCCTTCCTCCCTTCCGCCTCTTCCTCCTTCTCGT
CCCCTTCCATCGCCTCCTCCTCCTCCCTCTCTTATCAAGCCCCCCCCCCA
CCAGTTCAGAGCACCCTCAGCATACTCCCACCACCATTTAATATCGCACT
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Synonyms
Publications