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Properties
| Property Name | Value |
|---|
| TranscriptId | 620216 |
| Track | FilteredModels2 |
| ProteinId | 620130 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_204 | supercontig | scaffold_204:6297..9231 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12008 ID=mRNA_12008|Name=jgi.p|Nanoce1779_2|620130|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
ACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCATGGCGCTCAAGC
GGATCAACAAGGAATTGCAGGACCTGGGACGAGATCCGCCTGCAAACTGC
TCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCATCAT
GGGTCCTGATGACTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACATTC
ATTTCCCTGCCGACTACCCCTTTAAGCCCCCCAAGGTGAACTTCACGACG
CGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGACAT
CCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTCCTACTCT
CCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCC
GAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCCACCGC
ACGCGAGTGGACCGCCAAGTATGCGATGTAGTCGGAGCTTGGTCTCCTCC
TCCCTGATGGACCCCCCCCCCCCGAGCAGCACCAACAAGTACGAAAATAA
TCACAAGAAGAAGAGGAAGGTGAAGAATTGAATTAAGGAAGGAAGGAAAG
GAAGGGAGATAGAATGGGAGGAAGGGAGGGAGGGAGAGAGGGAGGAAGGG
GCTTGCCCTTCTAATAAGTGTACATATCATCGTCCATAGCGTCAGTCTCA
GTGAGCAGTCTGTCATGTGGGCCACACATAGAGACAGGCGCCCAACACGC
ACTCACGAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGAGAGAGAGGGTG
GGGCTTGGGGAGAAGAGGGAAGGCGGGAATGAAAGGGACGAGGCAAGACG
AAGCAGCCCATACGTCGTGTACGTCCTCGGTGCATTGAGGATTGTGGAAG
ATATCGGGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGAGAGGAAACAAT
GAGGAATGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAGAAGAGAGAAAA
AGAGAGAGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGTATTGTCGGTTT
TGATTCAGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTCTTTCTCTTCTT
CTCCTAGTTTAATCGCTATTCCTCTTCCTTGTCCTCTTTCTGCCTATTTC
CTGCGTATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCTTTGTCTTGTGA
GCACTCTGGACGTGGACGTACGGATGGTGGTGATTGGTCTTGTGAGGATG
AGGGCGGTGCAGATGGTGGTGGTTGTGGTGATGATGGTGGTGGTAAGAAG
AAATCACAAAAGAAGCAACGGACGGGCCTTGAAAACATTAAAAATCGCTG
CGACTACAACCAACGCTCTTCCTCCTCCCTCTCCCTATACCTATCTCCCT
CCCCTGTCGACCTGGAACTATCTCCCTTCCCTGTCGACCTACGCTGTTCC
GCGACCCCCGGCATTGGTGCCAGGTGAATAAATGTTTACACACTCATCAC
GAGCCTCGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAAACCCAAAAAC
ACACGAACACAAACACACAACACGCACAGCGTGGGGATGCCGTGCCATTC
AATAGTTCTTCCACCGACAGGCATGGACAGGGGCAGGCAGGCGAGGCTGC
TACATTTTAAGAATGAGTTGCTTCTCTTATAATCACACGAATGCCTGGAT
TATATCATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATCAGCTATACAC
GTCCTATTCCCTTCACCTCGGCCCATTTCCGCCCTCCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|620130 >mRNA_12008-protein ID=mRNA_12008-protein|Name=jgi.p|Nanoce1779_2|620130|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVF
FLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVS
KVLLSICSLLTDPNPDDPLVPEIAQLYRTDRGRHDATAREWTAKYAM* back to topmRNA from alignment at scaffold_204:6297..9231- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12008 ID=mRNA_12008|Name=jgi.p|Nanoce1779_2|620130|organism=Nannochloropsis oceanica|type=mRNA|length=2935bp|location=Sequence derived from alignment at scaffold_204:6297..9231- (Nannochloropsis oceanica)
ACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCATGGCGCTCAAGC
GGATCAACAAGGAATTGCAGGACCTGGGTGCGTCCGGGAGGGAGGGCGGA
AGGGAACGAACAAGAAGCTGGAAGGGGAGAGAGGAGATGGCTACTTTGGA
GGTGTACTTCGTCTGGAATGACACCAGCTACAGACCCACAGGGCTATATG
ATTTCAAGCAATTGTACATTTCTGTCGCACGCAACCCTGACTCCCGTTGT
GTCCACTCACCGCTCTTTTTCCCCCTTTCCCTTCTTTCCCCCTCTTCTTC
TGTCTTCCTCTCCCCTTCCTTTTCGTTGTAGGACGAGATCCGCCTGCAAA
CTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCA
TCATGGGTCCTGGTACGTGCTTGTCCGGTGGCTGCTTCTCCCGTCTTCCT
TAGAATTAACCTGGCCTTTGTTTTCTTCGCTGGGCCAACGTATCCCCACC
CTTTCATCTCTCATCTCCTCCCTACTCTATGCAGATGACTCGCCTTACAG
CGGCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCGACTACCCCTTTA
AGCCCCCAAGGTACGTGGGCTAGGTCGGGAGATACGACGGTTTGTCGGGG
GGTTTCAAAACAGCCAGCTCTGAAGCCTGAGTGTGCCTCGGCACCCACAC
ACTCTGTCCCCGCCCCCTCTGCCATAGGTGAACTTCACGACGCGTATTTA
CCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGACATCCTGAAGG
ACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTATTTATGTTGCCCCCA
CCTACCCATCCATCTCCGTATCTACCCACCCATCCACCTACCTACCTATC
TACCCCTTTATCTATCCATTGTATCTAGCCACATGAATACGTATCTATCT
ACTTATCTACCTACCCATCTACCTACCTACAAACCTAATCTATATCCATG
TATCTAGCTACCTGAATACTTATCTATATACGGAGGCCCATCTCTCCCTC
CCTGCATGTCCCGCCTCCGTATTTTCCTTCATTTCAGCCTACGCATATAT
CCCAAACGCCGCAATTTAGAAAATGACATCATCAAATTGGCACACGCATA
CCCTCCCTCACCCCTCCCTCCGTCCCTCCCTCCGTCCTTCCCTCCCTCGC
CGTTTTTCAGGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCAACC
CAGACGATCCCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGACCGG
GGAAGGCACGACGCCACCGCACGCGAGTGGACCGCCAAGTACGTGCCGTC
GAGAGGGGGTCAGGGAGGGAGGAAGGGAGGGGGGAAGGGAGGGAGGGAGG
GAGGGGGGAAGGGAGGGAGGATGCAAATGATGATGGGTGGGTGTGGGGGT
GGTTGGTGTGTGTATGTGTGTGTCTAAAAGAGAGGGGTGGATTGGGATAA
CCAGTTCAAGACAAAAGGTTTGAAAGCCCAGGACGACTTGACCCGCCCTT
TCCGTCTGTCCTGCCTCCCTCACCTCACCTCTCTCCCTGCCCTCCTCGCT
TTCTTATGACAGGTATGCGATGTAGTCGGAGCTTGGTCTCCTCCTCCCTG
ATGGACCCCCCCCCCCCGAGCAGCACCAACAAGTACGAAAATAATCACAA
GAAGAAGAGGAAGGTGAAGAATTGAATTAAGGAAGGAAGGAAAGGAAGGG
AGATAGAATGGGAGGAAGGGAGGGAGGGAGAGAGGGAGGAAGGGGCTTGC
CCTTCTAATAAGTGTACATATCATCGTCCATAGCGTCAGTCTCAGTGAGC
AGTCTGTCATGTGGGCCACACATAGAGACAGGCGCCCAACACGCACTCAC
GAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGAGAGAGAGGGTGGGGCTT
GGGGAGAAGAGGGAAGGCGGGAATGAAAGGGACGAGGCAAGACGAAGCAG
CCCATACGTCGTGTACGTCCTCGGTGCATTGAGGATTGTGGAAGATATCG
GGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGAGAGGAAACAATGAGGAA
TGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAGAAGAGAGAAAAAGAGAG
AGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGTATTGTCGGTTTTGATTC
AGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTCTTTCTCTTCTTCTCCTA
GTTTAATCGCTATTCCTCTTCCTTGTCCTCTTTCTGCCTATTTCCTGCGT
ATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCTTTGTCTTGTGAGCACTC
TGGACGTGGACGTACGGATGGTGGTGATTGGTCTTGTGAGGATGAGGGCG
GTGCAGATGGTGGTGGTTGTGGTGATGATGGTGGTGGTAAGAAGAAATCA
CAAAAGAAGCAACGGACGGGCCTTGAAAACATTAAAAATCGCTGCGACTA
CAACCAACGCTCTTCCTCCTCCCTCTCCCTATACCTATCTCCCTCCCCTG
TCGACCTGGAACTATCTCCCTTCCCTGTCGACCTACGCTGTTCCGCGACC
CCCGGCATTGGTGCCAGGTGAATAAATGTTTACACACTCATCACGAGCCT
CGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAAACCCAAAAACACACGA
ACACAAACACACAACACGCACAGCGTGGGGATGCCGTGCCATTCAATAGT
TCTTCCACCGACAGGCATGGACAGGGGCAGGCAGGCGAGGCTGCTACATT
TTAAGAATGAGTTGCTTCTCTTATAATCACACGAATGCCTGGATTATATC
ATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATCAGCTATACACGTCCTA
TTCCCTTCACCTCGGCCCATTTCCGCCCTCCCTCC back to topCoding sequence (CDS) from alignment at scaffold_204:6297..9231- >mRNA_12008 ID=mRNA_12008|Name=jgi.p|Nanoce1779_2|620130|organism=Nannochloropsis oceanica|type=CDS|length=3108bp|location=Sequence derived from alignment at scaffold_204:6297..9231- (Nannochloropsis oceanica)
GTATGCGATGTAGGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCA
ACCCAGACGATCCCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGAC
CGGGGAAGGCACGACGCCACCGCACGCGAGTGGACCGCCAAAGGTGAACT
TCACGACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGC
CTGGACATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGCA
ATGACTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACATTCATTTCCCT
GCCGACTACCCCTTTAAGCCCCCGACGAGATCCGCCTGCAAACTGCTCGG
CAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCATCATGGGT
CCTGATGGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGTATGC
GATGTAGGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAG
ACGATCCCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGACCGGGGA
AGGCACGACGCCACCGCACGCGAGTGGACCGCCAAAGGTGAACTTCACGA
CGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGAC
ATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGCAATGACT
CGCCTTACAGCGGCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCGAC
TACCCCTTTAAGCCCCCGACGAGATCCGCCTGCAAACTGCTCGGCAGGCC
CTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCATCATGGGTCCTGAT
GGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGTATGCGATGTA
GGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATC
CCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCAC
GACGCCACCGCACGCGAGTGGACCGCCAAAGGTGAACTTCACGACGCGTA
TTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGACATCCTG
AAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGCAATGACTCGCCTT
ACAGCGGCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCGACTACCCC
TTTAAGCCCCCGACGAGATCCGCCTGCAAACTGCTCGGCAGGCCCTGTGG
GCGACGACCTTTTTCACTGGCAAGCCACCATCATGGGTCCTGATGGCGCT
CAAGCGGATCAACAAGGAATTGCAGGACCTGGGTATGCGATGTAGGTCCT
ACTCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGG
TGCCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCC
ACCGCACGCGAGTGGACCGCCAAAGGTGAACTTCACGACGCGTATTTACC
ACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGACATCCTGAAGGAC
CAGTGGAGCCCTGCCCTGACAGTCTCCAAGCAATGACTCGCCTTACAGCG
GCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCGACTACCCCTTTAAG
CCCCCGACGAGATCCGCCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACG
ACCTTTTTCACTGGCAAGCCACCATCATGGGTCCTGATGGCGCTCAAGCG
GATCAACAAGGAATTGCAGGACCTGGGTATGCGATGTAGGTCCTACTCTC
CATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCCG
AGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCCACCGCA
CGCGAGTGGACCGCCAAAGGTGAACTTCACGACGCGTATTTACCACTGCA
ACATTAACGCGAACGGCGGCATCTGCCTGGACATCCTGAAGGACCAGTGG
AGCCCTGCCCTGACAGTCTCCAAGCAATGACTCGCCTTACAGCGGCGCCG
TCTTCTTCCTCAACATTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCG
ACGAGATCCGCCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTT
TTCACTGGCAAGCCACCATCATGGGTCCTGATGGCGCTCAAGCGGATCAA
CAAGGAATTGCAGGACCTGGGTATGCGATGTAGGTCCTACTCTCCATCTG
CTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCCGAGATCG
CACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCCACCGCACGCGAG
TGGACCGCCAAAGGTGAACTTCACGACGCGTATTTACCACTGCAACATTA
ACGCGAACGGCGGCATCTGCCTGGACATCCTGAAGGACCAGTGGAGCCCT
GCCCTGACAGTCTCCAAGCAATGACTCGCCTTACAGCGGCGCCGTCTTCT
TCCTCAACATTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCGACGAGA
TCCGCCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACT
GGCAAGCCACCATCATGGGTCCTGATGGCGCTCAAGCGGATCAACAAGGA
ATTGCAGGACCTGGGTATGCGATGTAGGTCCTACTCTCCATCTGCTCCCT
CCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCCGAGATCGCACAGC
TGTACCGCACGGACCGGGGAAGGCACGACGCCACCGCACGCGAGTGGACC
GCCAAAGGTGAACTTCACGACGCGTATTTACCACTGCAACATTAACGCGA
ACGGCGGCATCTGCCTGGACATCCTGAAGGACCAGTGGAGCCCTGCCCTG
ACAGTCTCCAAGCAATGACTCGCCTTACAGCGGCGCCGTCTTCTTCCTCA
ACATTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCGACGAGATCCGCC
TGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAG
CCACCATCATGGGTCCTGATGGCGCTCAAGCGGATCAACAAGGAATTGCA
GGACCTGG back to top
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