scaffold_154, scaffold_154 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_154
Unique Name	scaffold_154
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	31203
Alignment location	jgi.p\|Nanoce1779_2\|97610:21384..22269 -
Alignment location	jgi.p\|Nanoce1779_2\|97610:21384..22269 -
Alignment location	CDS_11472:21540..21989 -
Alignment location	jgi.p\|Nanoce1779_2\|618302:6964..7632 +
Alignment location	jgi.p\|Nanoce1779_2\|618302:6964..7632 +
Alignment location	CDS_11465:6974..7591 +
Alignment location	jgi.p\|Nanoce1779_2\|618312:9852..11206 +
Alignment location	jgi.p\|Nanoce1779_2\|618312:9852..11206 +
Alignment location	CDS_11467:9913..10139 +
Alignment location	CDS_11467:10226..10421 +
Alignment location	jgi.p\|Nanoce1779_2\|618321:11037..12015 +
Alignment location	jgi.p\|Nanoce1779_2\|618321:11037..12015 +
Alignment location	CDS_11468:11054..11206 +
Alignment location	CDS_11468:11342..11408 +
Alignment location	CDS_11468:11498..11785 +
Alignment location	CDS_11468:11867..11907 +
Alignment location	jgi.p\|Nanoce1779_2\|618335:18699..19974 -
Alignment location	jgi.p\|Nanoce1779_2\|618335:18699..19974 -
Alignment location	CDS_11470:18890..19804 -
Alignment location	jgi.p\|Nanoce1779_2\|618344:23464..24383 -
Alignment location	jgi.p\|Nanoce1779_2\|618344:23464..24383 -
Alignment location	CDS_11474:23744..24175 -
Alignment location	jgi.p\|Nanoce1779_2\|618345:23464..25237 -
Alignment location	jgi.p\|Nanoce1779_2\|618345:23464..25237 -
Alignment location	CDS_11475:24440..25237 -
Alignment location	jgi.p\|Nanoce1779_2\|618349:28273..30708 +
Alignment location	jgi.p\|Nanoce1779_2\|618349:28273..30708 +
Alignment location	CDS_11476:29281..30582 +
Alignment location	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
Alignment location	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
Alignment location	CDS_11466:9453..9536 -
Alignment location	CDS_11466:9099..9235 -
Alignment location	CDS_11466:8683..8910 -
Alignment location	CDS_11466:8380..8542 -
Alignment location	CDS_11466:8013..8216 -
Alignment location	CDS_11466:7701..7886 -
Alignment location	jgi.p\|Nanoce1779_2\|675792:262..2250 +
Alignment location	jgi.p\|Nanoce1779_2\|675792:262..2250 +
Alignment location	CDS_11463:262..309 +
Alignment location	CDS_11463:458..619 +
Alignment location	CDS_11463:738..825 +
Alignment location	CDS_11463:994..1136 +
Alignment location	CDS_11463:1273..1329 +
Alignment location	CDS_11463:1423..1563 +
Alignment location	CDS_11463:1640..1680 +
Alignment location	CDS_11463:1755..1876 +
Alignment location	CDS_11463:2051..2250 +
Alignment location	jgi.p\|Nanoce1779_2\|675793:2657..6930 -
Alignment location	jgi.p\|Nanoce1779_2\|675793:2657..6930 -
Alignment location	CDS_11464:6028..6177 -
Alignment location	CDS_11464:5669..5869 -
Alignment location	CDS_11464:5366..5489 -
Alignment location	CDS_11464:4944..5093 -
Alignment location	CDS_11464:4681..4763 -
Alignment location	CDS_11464:4497..4599 -
Alignment location	CDS_11464:4190..4330 -
Alignment location	CDS_11464:3947..4029 -
Alignment location	CDS_11464:3670..3779 -
Alignment location	CDS_11464:3319..3374 -
Alignment location	CDS_11464:3051..3134 -
Alignment location	CDS_11464:2657..2796 -
Alignment location	jgi.p\|Nanoce1779_2\|97610:21540..21989 -
Alignment location	jgi.p\|Nanoce1779_2\|618302:6974..7591 +
Alignment location	jgi.p\|Nanoce1779_2\|618312:9913..10421 +
Alignment location	jgi.p\|Nanoce1779_2\|618321:11054..11907 +
Alignment location	jgi.p\|Nanoce1779_2\|618335:18890..19804 -
Alignment location	jgi.p\|Nanoce1779_2\|618344:23744..24175 -
Alignment location	jgi.p\|Nanoce1779_2\|618345:24440..25237 -
Alignment location	jgi.p\|Nanoce1779_2\|618349:29281..30582 +
Alignment location	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
Alignment location	jgi.p\|Nanoce1779_2\|675792:262..2250 +
Alignment location	jgi.p\|Nanoce1779_2\|675793:2657..6177 -
Alignment location	ncniL023:263..25237 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|97610	gene	jgi.p\|Nanoce1779_2\|97610:21384..22269 -
jgi.p\|Nanoce1779_2\|97610	mRNA	jgi.p\|Nanoce1779_2\|97610:21384..22269 -
CDS_11472	CDS	CDS_11472:21540..21989 -
jgi.p\|Nanoce1779_2\|618302	gene	jgi.p\|Nanoce1779_2\|618302:6964..7632 +
jgi.p\|Nanoce1779_2\|618302	mRNA	jgi.p\|Nanoce1779_2\|618302:6964..7632 +
CDS_11465	CDS	CDS_11465:6974..7591 +
jgi.p\|Nanoce1779_2\|618312	gene	jgi.p\|Nanoce1779_2\|618312:9852..11206 +
jgi.p\|Nanoce1779_2\|618312	mRNA	jgi.p\|Nanoce1779_2\|618312:9852..11206 +
CDS_11467	CDS	CDS_11467:9913..10139 +
CDS_11467	CDS	CDS_11467:10226..10421 +
jgi.p\|Nanoce1779_2\|618321	gene	jgi.p\|Nanoce1779_2\|618321:11037..12015 +
jgi.p\|Nanoce1779_2\|618321	mRNA	jgi.p\|Nanoce1779_2\|618321:11037..12015 +
CDS_11468	CDS	CDS_11468:11054..11206 +
CDS_11468	CDS	CDS_11468:11342..11408 +
CDS_11468	CDS	CDS_11468:11498..11785 +
CDS_11468	CDS	CDS_11468:11867..11907 +
jgi.p\|Nanoce1779_2\|618335	gene	jgi.p\|Nanoce1779_2\|618335:18699..19974 -
jgi.p\|Nanoce1779_2\|618335	mRNA	jgi.p\|Nanoce1779_2\|618335:18699..19974 -
CDS_11470	CDS	CDS_11470:18890..19804 -
jgi.p\|Nanoce1779_2\|618344	gene	jgi.p\|Nanoce1779_2\|618344:23464..24383 -
jgi.p\|Nanoce1779_2\|618344	mRNA	jgi.p\|Nanoce1779_2\|618344:23464..24383 -
CDS_11474	CDS	CDS_11474:23744..24175 -
jgi.p\|Nanoce1779_2\|618345	gene	jgi.p\|Nanoce1779_2\|618345:23464..25237 -
jgi.p\|Nanoce1779_2\|618345	mRNA	jgi.p\|Nanoce1779_2\|618345:23464..25237 -
CDS_11475	CDS	CDS_11475:24440..25237 -
jgi.p\|Nanoce1779_2\|618349	gene	jgi.p\|Nanoce1779_2\|618349:28273..30708 +
jgi.p\|Nanoce1779_2\|618349	mRNA	jgi.p\|Nanoce1779_2\|618349:28273..30708 +
CDS_11476	CDS	CDS_11476:29281..30582 +
jgi.p\|Nanoce1779_2\|644451	gene	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
jgi.p\|Nanoce1779_2\|644451	mRNA	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
CDS_11466	CDS	CDS_11466:9453..9536 -
CDS_11466	CDS	CDS_11466:9099..9235 -
CDS_11466	CDS	CDS_11466:8683..8910 -
CDS_11466	CDS	CDS_11466:8380..8542 -
CDS_11466	CDS	CDS_11466:8013..8216 -
CDS_11466	CDS	CDS_11466:7701..7886 -
jgi.p\|Nanoce1779_2\|675792	gene	jgi.p\|Nanoce1779_2\|675792:262..2250 +
jgi.p\|Nanoce1779_2\|675792	mRNA	jgi.p\|Nanoce1779_2\|675792:262..2250 +
CDS_11463	CDS	CDS_11463:262..309 +
CDS_11463	CDS	CDS_11463:458..619 +
CDS_11463	CDS	CDS_11463:738..825 +
CDS_11463	CDS	CDS_11463:994..1136 +
CDS_11463	CDS	CDS_11463:1273..1329 +
CDS_11463	CDS	CDS_11463:1423..1563 +
CDS_11463	CDS	CDS_11463:1640..1680 +
CDS_11463	CDS	CDS_11463:1755..1876 +
CDS_11463	CDS	CDS_11463:2051..2250 +
jgi.p\|Nanoce1779_2\|675793	gene	jgi.p\|Nanoce1779_2\|675793:2657..6930 -
jgi.p\|Nanoce1779_2\|675793	mRNA	jgi.p\|Nanoce1779_2\|675793:2657..6930 -
CDS_11464	CDS	CDS_11464:6028..6177 -
CDS_11464	CDS	CDS_11464:5669..5869 -
CDS_11464	CDS	CDS_11464:5366..5489 -
CDS_11464	CDS	CDS_11464:4944..5093 -
CDS_11464	CDS	CDS_11464:4681..4763 -
CDS_11464	CDS	CDS_11464:4497..4599 -
CDS_11464	CDS	CDS_11464:4190..4330 -
CDS_11464	CDS	CDS_11464:3947..4029 -
CDS_11464	CDS	CDS_11464:3670..3779 -
CDS_11464	CDS	CDS_11464:3319..3374 -
CDS_11464	CDS	CDS_11464:3051..3134 -
CDS_11464	CDS	CDS_11464:2657..2796 -
jgi.p\|Nanoce1779_2\|97610	polypeptide	jgi.p\|Nanoce1779_2\|97610:21540..21989 -
jgi.p\|Nanoce1779_2\|618302	polypeptide	jgi.p\|Nanoce1779_2\|618302:6974..7591 +
jgi.p\|Nanoce1779_2\|618312	polypeptide	jgi.p\|Nanoce1779_2\|618312:9913..10421 +
jgi.p\|Nanoce1779_2\|618321	polypeptide	jgi.p\|Nanoce1779_2\|618321:11054..11907 +
jgi.p\|Nanoce1779_2\|618335	polypeptide	jgi.p\|Nanoce1779_2\|618335:18890..19804 -
jgi.p\|Nanoce1779_2\|618344	polypeptide	jgi.p\|Nanoce1779_2\|618344:23744..24175 -
jgi.p\|Nanoce1779_2\|618345	polypeptide	jgi.p\|Nanoce1779_2\|618345:24440..25237 -
jgi.p\|Nanoce1779_2\|618349	polypeptide	jgi.p\|Nanoce1779_2\|618349:29281..30582 +
jgi.p\|Nanoce1779_2\|644451	polypeptide	jgi.p\|Nanoce1779_2\|644451:7701..9536 -
jgi.p\|Nanoce1779_2\|675792	polypeptide	jgi.p\|Nanoce1779_2\|675792:262..2250 +
jgi.p\|Nanoce1779_2\|675793	polypeptide	jgi.p\|Nanoce1779_2\|675793:2657..6177 -
ncniL023	syntenic_region	ncniL023:263..25237 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications