jgi.p|Nanoce1779_2|97610, mRNA_11472 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|97610
Unique NamemRNA_11472
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length886
Alignment locationscaffold_154:21384..22269 -

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Properties
Property NameValue
TranscriptId97696
TrackFilteredModels2
ProteinId97610
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:21384..22269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|97610gene_11472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|97610mRNA_11472-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11472CDS_11472Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11472 ID=mRNA_11472|Name=jgi.p|Nanoce1779_2|97610|organism=Nannochloropsis oceanica|type=mRNA|length=886bp
GGAATGCTATTTCACCTCTGTCGCTGATCTGCGGCACTCAAGCAACGAGC
ACTACTATCACTCCAAAATACCTATATTGGATGATGGTATTCACATTAAC
GGTGAACGACTCTGCATCCATCTCAGTACTGTCCTCAATATGATGGGTTG
CACCCTTCCATTCGCTAATAGTGCGCTACATTGGATAGCCAATTTGGCGT
TGGCTAGAAATGTGCAATCAATGGATGGTTTCCATCGAGAGTGCGTCATT
CACCTAATTGCTTCTTTTTAGGTCAGTACTATGGCTGCATGGCCCAAGTT
CTGGCACGCGGTAGTGTCTATTATAGATCATACTACAAACGCGGCCCTCT
TGGAAGAACATAAAAAAACAGTCCATATACATCAACAAAAGAATGGAAAT
AAAAATAAATTAAAAAAAATTGAGTACCTTGCACGCAAGAGTCCGAACTT
TGAGTATTGGTTAGAGAAGTACCCAACCTATGTAAAGAATTTGCAAAACT
TTCCAAAAGCGGACCTCGCCGGGGGCAGGGAATTAGAAGTGGCGGTACAC
CACATCCCCGCTCGTCTCATTCCTACCCTGGGCTCAAGTAAAAAGCCTTT
CGGACATCAGATCCCTGCACATGGGACGAGACACCATTATCTTTTCTGCC
TTGCAGCGATCCCTCCAAGCACACACACACTGCCGGTGATAGCTGTGAAA
GCACAGCAGTTCCACCCCTCCTACATATAGATATCGAAACGGGCTGAGGG
CGTCTTTTTCTCCGACTGCATCCCGAATTTGCTTCTTCTCCATGCCACAG
CTATCCTTCAAGTCCTCATTCACAAAGGCAAGAAACCTCCATACCGCGTC
CGACACCCGCTGCTCGCGCTCCTTTAAGATCGAGCT
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protein sequence of jgi.p|Nanoce1779_2|97610

>mRNA_11472-protein ID=mRNA_11472-protein|Name=jgi.p|Nanoce1779_2|97610|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAAWPKFWHAVVSIIDHTTNAALLEEHKKTVHIHQQKNGNKNKLKKIEYL
ARKSPNFEYWLEKYPTYVKNLQNFPKADLAGGRELEVAVHHIPARLIPTL
GSSKKPFGHQIPAHGTRHHYLFCLAAIPPSTHTLPVIAVKAQQFHPSYI*
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mRNA from alignment at scaffold_154:21384..22269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11472 ID=mRNA_11472|Name=jgi.p|Nanoce1779_2|97610|organism=Nannochloropsis oceanica|type=mRNA|length=886bp|location=Sequence derived from alignment at scaffold_154:21384..22269- (Nannochloropsis oceanica)
GGAATGCTATTTCACCTCTGTCGCTGATCTGCGGCACTCAAGCAACGAGC
ACTACTATCACTCCAAAATACCTATATTGGATGATGGTATTCACATTAAC
GGTGAACGACTCTGCATCCATCTCAGTACTGTCCTCAATATGATGGGTTG
CACCCTTCCATTCGCTAATAGTGCGCTACATTGGATAGCCAATTTGGCGT
TGGCTAGAAATGTGCAATCAATGGATGGTTTCCATCGAGAGTGCGTCATT
CACCTAATTGCTTCTTTTTAGGTCAGTACTATGGCTGCATGGCCCAAGTT
CTGGCACGCGGTAGTGTCTATTATAGATCATACTACAAACGCGGCCCTCT
TGGAAGAACATAAAAAAACAGTCCATATACATCAACAAAAGAATGGAAAT
AAAAATAAATTAAAAAAAATTGAGTACCTTGCACGCAAGAGTCCGAACTT
TGAGTATTGGTTAGAGAAGTACCCAACCTATGTAAAGAATTTGCAAAACT
TTCCAAAAGCGGACCTCGCCGGGGGCAGGGAATTAGAAGTGGCGGTACAC
CACATCCCCGCTCGTCTCATTCCTACCCTGGGCTCAAGTAAAAAGCCTTT
CGGACATCAGATCCCTGCACATGGGACGAGACACCATTATCTTTTCTGCC
TTGCAGCGATCCCTCCAAGCACACACACACTGCCGGTGATAGCTGTGAAA
GCACAGCAGTTCCACCCCTCCTACATATAGATATCGAAACGGGCTGAGGG
CGTCTTTTTCTCCGACTGCATCCCGAATTTGCTTCTTCTCCATGCCACAG
CTATCCTTCAAGTCCTCATTCACAAAGGCAAGAAACCTCCATACCGCGTC
CGACACCCGCTGCTCGCGCTCCTTTAAGATCGAGCT
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Coding sequence (CDS) from alignment at scaffold_154:21384..22269-

>mRNA_11472 ID=mRNA_11472|Name=jgi.p|Nanoce1779_2|97610|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_154:21384..22269- (Nannochloropsis oceanica)
ATGGCTGCATGGCCCAAGTTCTGGCACGCGGTAGTGTCTATTATAGATCA
TACTACAAACGCGGCCCTCTTGGAAGAACATAAAAAAACAGTCCATATAC
ATCAACAAAAGAATGGAAATAAAAATAAATTAAAAAAAATTGAGTACCTT
GCACGCAAGAGTCCGAACTTTGAGTATTGGTTAGAGAAGTACCCAACCTA
TGTAAAGAATTTGCAAAACTTTCCAAAAGCGGACCTCGCCGGGGGCAGGG
AATTAGAAGTGGCGGTACACCACATCCCCGCTCGTCTCATTCCTACCCTG
GGCTCAAGTAAAAAGCCTTTCGGACATCAGATCCCTGCACATGGGACGAG
ACACCATTATCTTTTCTGCCTTGCAGCGATCCCTCCAAGCACACACACAC
TGCCGGTGATAGCTGTGAAAGCACAGCAGTTCCACCCCTCCTACATATAG
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Synonyms
Publications