jgi.p|Nanoce1779_2|618312, mRNA_11467 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618312
Unique NamemRNA_11467
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length942
Alignment locationscaffold_154:9852..11206 +

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Properties
Property NameValue
TranscriptId618398
TrackFilteredModels2
ProteinId618312
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:9852..11206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618312gene_11467Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618312mRNA_11467-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11467CDS_11467Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11467 ID=mRNA_11467|Name=jgi.p|Nanoce1779_2|618312|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
AGACACACTCACACGCCGTGGCGAACTGCCCATTTGCTGTACTCTCCCGC
CCTCCACCGCCATGGTGTTCCATCCCATATTTCTCTCGCCCGCCCTGCTT
CAAACCCCTGCCCTCCTCCAGTCTTCCTCCCTCAGTCTCGCCCTCATTGC
GTGTCTGTCCATGGCCGTGCTGTACGTTGCCGCGCTCTACGTCTTGCCGG
CCTCTATCAGGCAACGGCACCGTGACGATGCCACCCACGTCAAGGCGCGA
TTCTTCTCTGTGGTGGCGGCCTGTCTGCTTTCAATACGGATCTTCTTGCT
CTTCACTAATCCCGCGCCTGACGCTGTGCATCCCGTCTATCACTGGCTGG
GCTTCACAGGTATGTCCACACCTTTCTTGATTTCGCTCTTTCGCTGCGCT
CTTCCTCCTTACCCACCTTCCATCCCCTCCTACTTACGACCCGCTTCATA
TTTTCTTGCCTCCTCGTTGGCCTCAAACTATTGACGACATAATGGCTAGG
CTGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCT
TCTTCGGGCCCATCGTAGTCATTTGCGCAGAGAGCTACTACGATCGTTGG
TATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCG
TCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGGA
GGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTG
GTGGCGCCACTGACGGAGGAAATCGTATTCCGTGCCTGCATGCTCCCTCT
CCTTTACCAAGCTTCCTCCTCCCCTTCCTCACTGGATTCCCCCCGAGCTA
TCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCG
CACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCG
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protein sequence of jgi.p|Nanoce1779_2|618312

>mRNA_11467-protein ID=mRNA_11467-protein|Name=jgi.p|Nanoce1779_2|618312|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR
QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG
MSTPFLISLFRCALPPYPPSIPSYLRPASYFLASSLASNY*
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mRNA from alignment at scaffold_154:9852..11206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11467 ID=mRNA_11467|Name=jgi.p|Nanoce1779_2|618312|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp|location=Sequence derived from alignment at scaffold_154:9852..11206+ (Nannochloropsis oceanica)
AGACACACTCACACGCCGTGGCGAACTGCCCATTTGCTGTACTCTCCCGC
CCTCCACCGCCATGGTGTTCCATCCCATATTTCTCTCGCCCGCCCTGCTT
CAAACCCCTGCCCTCCTCCAGTCTTCCTCCCTCAGTCTCGCCCTCATTGC
GTGTCTGTCCATGGCCGTGCTGTACGTTGCCGCGCTCTACGTCTTGCCGG
CCTCTATCAGGCAACGGCACCGTGACGATGCCACCCACGTCAAGGCGCGA
TTCTTCTCTGTGGTGGCGGCCTGTCTGCTTTCAATACGGTAGGGTTGGAG
AACGGAGGAGAGGAAGGAGGCCAGAAGGGGAGGGGATGATAATGCTGACG
AATCAAAACGAACCAAACTACCAGGATCTTCTTGCTCTTCACTAATCCCG
CGCCTGACGCTGTGCATCCCGTCTATCACTGGCTGGGCTTCACAGGTATG
TCCACACCTTTCTTGATTTCGCTCTTTCGCTGCGCTCTTCCTCCTTACCC
ACCTTCCATCCCCTCCTACTTACGACCCGCTTCATATTTTCTTGCCTCCT
CGTTGGCCTCAAACTATTGACGACATAATGGCTAGGCTGGACGAACCCTG
CCATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCTTCTTCGGGCCCATC
GTAGTCATTTGCGCAGGTATGTAAAGGAAAGTATGCTATCCTGTGCTCAG
CCGCCCAATTTTTAACCCTTCCTCCTTCCATCCCTTCATTTCTGCTTATG
GGTCTTCTATCGTGGACGATAAGAAGTGGAGATACGACACTCCCTGTCCT
GTCCTTTCCCCTTCCTCCTCTCATCCCTATCTGCTTACCTCCCTCCTGTT
CGTCTCTCAGAGAGCTACTACGATCGTTGGTATGAGGTAGTGATGCACCT
ATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCGTCGTATCCCCCTGC
CCTCGACCTGGTACGACTGGTGGGAGAGGAGGAGAATCGCGCACAGGCTG
ACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCGCCACTGACGGAGGT
AGGGCATGGGAGGGTCAACACAAAGGGACAGAAATTTGAGAACTTCATTC
CATCCATCGCCCGGCCTCGACTTGAACCTATCTGCCTTCTTTTTTCAAGG
TCCCTTCTTCCCTCCCTCCTTCCGCTTACAGGAAATCGTATTCCGTGCCT
GCATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCACTGGAT
TCCCCCCGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTT
TTTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGAT
TGCCG
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Coding sequence (CDS) from alignment at scaffold_154:9852..11206+

>mRNA_11467 ID=mRNA_11467|Name=jgi.p|Nanoce1779_2|618312|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_154:9852..11206+ (Nannochloropsis oceanica)
ATGGTGTTCCATCCCATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGC
CCTCCTCCAGTCTTCCTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCA
TGGCCGTGCTGTACGTTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGG
CAACGGCACCGTGACGATGCCACCCACGTCAAGGCGCGATTCTTCTCTGT
GGTGGCGGCCTGTCTGCTTTCAATACGGATCTTCTTGCTCTTCACTAATC
CCGCGCCTGACGCTGTGCATCCCGTCTATCACTGGCTGGGCTTCACAGGT
ATGTCCACACCTTTCTTGATTTCGCTCTTTCGCTGCGCTCTTCCTCCTTA
CCCACCTTCCATCCCCTCCTACTTACGACCCGCTTCATATTTTCTTGCCT
CCTCGTTGGCCTCAAACTATTGAATGGTGTTCCATCCCATATTTCTCTCG
CCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTCCTCCCTCAGTCT
CGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTGTACGTTGCCGCGCTCT
ACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGACGATGCCACCCAC
GTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCTGCTTTCAATACG
GATCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTGTGCATCCCGTCT
ATCACTGGCTGGGCTTCACAGGTATGTCCACACCTTTCTTGATTTCGCTC
TTTCGCTGCGCTCTTCCTCCTTACCCACCTTCCATCCCCTCCTACTTACG
ACCCGCTTCATATTTTCTTGCCTCCTCGTTGGCCTCAAACTATTGA
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Synonyms
Publications