jgi.p|Nanoce1779_2|618344, mRNA_11474 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618344
Unique NamemRNA_11474
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_154:23464..24383 -

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Properties
Property NameValue
TranscriptId618430
TrackFilteredModels2
ProteinId618344
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:23464..24383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618344gene_11474Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618344mRNA_11474-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11474CDS_11474Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11474 ID=mRNA_11474|Name=jgi.p|Nanoce1779_2|618344|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
ACAGGGCCATAATCGACACTATCTGTTGAGGGATCGGACTTCCTGGCACA
GGTCGATAGTGAGGTAATGCCCAAGACTCGATTCTCAAATCAAATATTAT
AACTTGGCCCCCTTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGTTGCT
TGCACTTTTCCGAGTCCCTAGAATCAGGGCTACAGGCTGGTATCACGGAG
ATGTCTGGATGAGGTCTCTGTTGCACACAGGTTGCTTTTTCACTTCAGGC
CTCCTCCTTAGCTTGAAGAATACATGGTCTCCAATAAGAGTCAGGAGTGC
ATGTAAAACTGAGCATGGGGAGAGATATTTCGCCTTGACAGCGGTACATT
CTAAAGACCGAGTTCACCGCCGGACTGTTTACCCGTTTTTCGGCCCAAAG
GCATTCCTTCGTTTAGCCCATTCGTTAGCCACTTTCCGTCCCTATCCTTC
CCCCTCCCTCCTGGACGCTCATCTACCACGAGTCGCTTTCTTGGTCCGCT
CTCCAAAGTGCACTTGCCCTCAAGACCCCTTCGTGCCTGCTCACGTATCA
ATTCGCTGTTTTTATTCTTTTGACAGAGTAGCCACGTACTTGTGTGCATT
AACAAAGAGTATCAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTTGGTA
GTAGGCTCAATATAAGGGGGGGGGGGAAGGGAAAGAAGGGGAGGAAAACC
CAGAAATTCTTAGCTTTCTTCTTTTCCATATAAATTACCATCCATTTTCT
TAGAGGAAAGGGTATCTCCTCCCCCAAACTCCCTTCCCGAAGAGGGACTG
CGCCCCAGCCGCGGGCTTGTTAAGAAATAGGGTGGGAAAGAAGCGAATTC
AAGAAGTCTTACTGCCCTTCGCTCATTCTTCTTTTTGTTGTGCGTCCGTC
TTTCTCTTGCTTGATTTCTA
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protein sequence of jgi.p|Nanoce1779_2|618344

>mRNA_11474-protein ID=mRNA_11474-protein|Name=jgi.p|Nanoce1779_2|618344|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MRSLLHTGCFFTSGLLLSLKNTWSPIRVRSACKTEHGERYFALTAVHSKD
RVHRRTVYPFFGPKAFLRLAHSLATFRPYPSPSLLDAHLPRVAFLVRSPK
CTCPQDPFVPAHVSIRCFYSFDRVATYLCALTKSISVYWLSPG*
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mRNA from alignment at scaffold_154:23464..24383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11474 ID=mRNA_11474|Name=jgi.p|Nanoce1779_2|618344|organism=Nannochloropsis oceanica|type=mRNA|length=920bp|location=Sequence derived from alignment at scaffold_154:23464..24383- (Nannochloropsis oceanica)
ACAGGGCCATAATCGACACTATCTGTTGAGGGATCGGACTTCCTGGCACA
GGTCGATAGTGAGGTAATGCCCAAGACTCGATTCTCAAATCAAATATTAT
AACTTGGCCCCCTTCGGATCCGTGCAACCGGCGTGCTAGCCGCAGTTGCT
TGCACTTTTCCGAGTCCCTAGAATCAGGGCTACAGGCTGGTATCACGGAG
ATGTCTGGATGAGGTCTCTGTTGCACACAGGTTGCTTTTTCACTTCAGGC
CTCCTCCTTAGCTTGAAGAATACATGGTCTCCAATAAGAGTCAGGAGTGC
ATGTAAAACTGAGCATGGGGAGAGATATTTCGCCTTGACAGCGGTACATT
CTAAAGACCGAGTTCACCGCCGGACTGTTTACCCGTTTTTCGGCCCAAAG
GCATTCCTTCGTTTAGCCCATTCGTTAGCCACTTTCCGTCCCTATCCTTC
CCCCTCCCTCCTGGACGCTCATCTACCACGAGTCGCTTTCTTGGTCCGCT
CTCCAAAGTGCACTTGCCCTCAAGACCCCTTCGTGCCTGCTCACGTATCA
ATTCGCTGTTTTTATTCTTTTGACAGAGTAGCCACGTACTTGTGTGCATT
AACAAAGAGTATCAGCGTTTACTGGCTGTCTCCGGGCTAAAAGCTTGGTA
GTAGGCTCAATATAAGGGGGGGGGGGAAGGGAAAGAAGGGGAGGAAAACC
CAGAAATTCTTAGCTTTCTTCTTTTCCATATAAATTACCATCCATTTTCT
TAGAGGAAAGGGTATCTCCTCCCCCAAACTCCCTTCCCGAAGAGGGACTG
CGCCCCAGCCGCGGGCTTGTTAAGAAATAGGGTGGGAAAGAAGCGAATTC
AAGAAGTCTTACTGCCCTTCGCTCATTCTTCTTTTTGTTGTGCGTCCGTC
TTTCTCTTGCTTGATTTCTA
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Coding sequence (CDS) from alignment at scaffold_154:23464..24383-

>mRNA_11474 ID=mRNA_11474|Name=jgi.p|Nanoce1779_2|618344|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_154:23464..24383- (Nannochloropsis oceanica)
ATGAGGTCTCTGTTGCACACAGGTTGCTTTTTCACTTCAGGCCTCCTCCT
TAGCTTGAAGAATACATGGTCTCCAATAAGAGTCAGGAGTGCATGTAAAA
CTGAGCATGGGGAGAGATATTTCGCCTTGACAGCGGTACATTCTAAAGAC
CGAGTTCACCGCCGGACTGTTTACCCGTTTTTCGGCCCAAAGGCATTCCT
TCGTTTAGCCCATTCGTTAGCCACTTTCCGTCCCTATCCTTCCCCCTCCC
TCCTGGACGCTCATCTACCACGAGTCGCTTTCTTGGTCCGCTCTCCAAAG
TGCACTTGCCCTCAAGACCCCTTCGTGCCTGCTCACGTATCAATTCGCTG
TTTTTATTCTTTTGACAGAGTAGCCACGTACTTGTGTGCATTAACAAAGA
GTATCAGCGTTTACTGGCTGTCTCCGGGCTAA
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Synonyms
Publications