jgi.p|Nanoce1779_2|618349, mRNA_11476 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|618349
Unique Name	mRNA_11476
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2338
Alignment location	scaffold_154:28273..30708 +

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Properties


Property Name	Value
TranscriptId	618435
Track	FilteredModels2
ProteinId	618349

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_154	supercontig	scaffold_154:28273..30708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618349	gene_11476	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618349	mRNA_11476-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11476	CDS_11476	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_154:28273..30708+
coding sequence from alignment at scaffold_154:28273..30708+

mRNA sequence

>mRNA_11476 ID=mRNA_11476|Name=jgi.p|Nanoce1779_2|618349|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp
AGGCCCCCTTGGTTCTTTTGATTTGGTCATCACTTGGCCCAGCATCAACA
CAGCATCAACCCAGCACCAGCCCAGATCAACCCAGCACCAGTCCAGCATC
AATCCAGCACCAGCCTAGCATCAACCCAGCACCAGCCCAGCATCAACACT
TAAGGGGCTGATTTACCGATAAATTCGTAGCCTGTGCACCAAATTTCCAC
TTCTAGGCACACAATTATTTGACGGACTATACAGGAAGTGATGTAAGTTT
TTTATTGTTTTTATTTTTGGGGGTTTTGATCACCACTTTGGGCTTTGCCA
TCGGCATGGTGACATCCACTTCTATCATATTTTGAGCCCCAGAATAAGCC
CGCCACGGATGACGGGTAGATGCCGGCATCGGGCCACTGACGGTTCCGCG
GAATAAAACGGCAAAATATACGTGTTCGAAAGAAAGAACAACAATCTTCC
CTTTTCCCATATCAAGTTCCGCCCGCGATCCATTAGTCACCATGACGGAT
GTAGGCATCACTTTTCTTCCTCCATTAAGAGGGGAGGGAGGCGGTGATTA
GATCTGCATACGCTACGTGTGTTTCTTTTGTTAGATTTTGCGTAAATCAG
TCACCAAGAGATAGGCGGTCACGTTTCCTATTGGTCGCAATATCGGATGT
AGACATCACTTTTATTTTTTAATATATAGTCGCCATAACGGATGTAGGTA
TCACTTTTATTTATTATACATAGTCGCCATAGTGCTTTTGTTTTTGTTTT
TGTTTTTGTTTTTTAAATTCAAGACTTATTATACCAATCGAATTATCTTA
TGACGTAGAATAAGGATGTAAAATAGCAGGTATTGTTTCGTAATTAAATT
ATGTGATATAAAAGAAAATAAGCCTCATATCCTATAGACTGGTCACACAT
CAATCTTTCTATGAATGTACACAGAATGAGGTATATTATATGGATATCAC
TGCAATATAATCTCACGGGAGCTCGAACTCTTTTCCATTGCACACCATGC
CATATAGGGACGATGACCGTTAAAAGGCGCTGCACTATAAATTTCAAAAA
CTACTGGACTATAGAATTTACTGCAAACCTATTACTGGCATCTGGGATCT
TCCTGCTTTTGTATTTTTCAGATTGGCATAAGTCGTACTCAACAACGAGA
AGCAACAGAGGGAGTGGACATAAAAAAATATTTTCCAGCTACTTTCCTTA
TCCTATTGAAACAATCGTCTCGGTAAAAGTACATAACGACAAGTATTCTG
TAAGGGACTTTCTTTGGTCTTGGCTGGCATTCTGGCCCCCCATATATGGA
CAAATCACATTCATAGTGAACTCTCAGAAGGCTGTATCGAATATAGATTC
TTGTCTTGAAGGAGCACGGGTGAAACCCTTCATAAAATATTTGAATGACA
GTGGATCTGCGGAACCAAAAACTTATTATAAGTTCATATCTGACTTATAC
ACGAATGCTACTGTAATCGCATTTTTTGATGATGATGCTTGTCTACGGGA
CCACGTGATCCCACTTGATCTATTTACTCCCGACAAGAAGATAATTGCTC
GTGGTGTGTCTTGGGGAGCCGTTAATGACGAGTGGCTTGACTCATACGGT
GCTCACAGCGCACTTTTCAACATCTCTAGCACGGATAATTACATGATCAA
TTTTCCAATCCTTGTCTGGCGAGATATGCTCTCTGACTTTCGAACCCATG
TGAACCAATACGTACATGGCGTTAGCGATAATTCCATTGCATTGTTCCAG
GACGCAATGAACAGCATCATATTACAGGATAATCATCGAACGTTCAAAGG
TGTTGTATGTGAATTCTGTTTATTACTAAATTTTGCGCATGACAATCCGA
AATGGAAGTCAAGATACCAGTTTGATATATGGCCAACAAAACATCCTTTG
TATTCGGCATCACAACACCACTTCAAAACATGCAGGAAACCTGAAGCTCT
ATGGGAGAGAGACAATGATAAATTTCTTCCAAATTTGGTGACAAGTGCAA
TCTTCCCATTTAGTTTTCATCCAGCATATGAGAAATTGGCCAATAGATAT
TATAATAATGCGTCTTTGCGCATAATACACGACATGATTTACGATCGTTC
CCAAAAGCTACAACAATTTGCTAGTAACCATCCAATGTCAGACTTGTCGT
GGTATACGAGGTGGAACGATGATATTGCGGCAGTCTGGTATCGATGCTTA
CGCTCGGGTTAGCTATATGAGTTTTATTTCCTACCACTGAGTTATGTGTG
GTGTACGCCTATGCCATTTTACGACTTATTTTCAAGTTTTAGCAACCAAG
GGCGCTTTAATCAAAGAAACAATGAGTTATCCCTTGTA

protein sequence of jgi.p|Nanoce1779_2|618349

>mRNA_11476-protein ID=mRNA_11476-protein|Name=jgi.p|Nanoce1779_2|618349|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MNVHRMRYIIWISLQYNLTGARTLFHCTPCHIGTMTVKRRCTINFKNYWT
IEFTANLLLASGIFLLLYFSDWHKSYSTTRSNRGSGHKKIFSSYFPYPIE
TIVSVKVHNDKYSVRDFLWSWLAFWPPIYGQITFIVNSQKAVSNIDSCLE
GARVKPFIKYLNDSGSAEPKTYYKFISDLYTNATVIAFFDDDACLRDHVI
PLDLFTPDKKIIARGVSWGAVNDEWLDSYGAHSALFNISSTDNYMINFPI
LVWRDMLSDFRTHVNQYVHGVSDNSIALFQDAMNSIILQDNHRTFKGVVC
EFCLLLNFAHDNPKWKSRYQFDIWPTKHPLYSASQHHFKTCRKPEALWER
DNDKFLPNLVTSAIFPFSFHPAYEKLANRYYNNASLRIIHDMIYDRSQKL
QQFASNHPMSDLSWYTRWNDDIAAVWYRCLRSG*

mRNA from alignment at scaffold_154:28273..30708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11476 ID=mRNA_11476|Name=jgi.p|Nanoce1779_2|618349|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp|location=Sequence derived from alignment at scaffold_154:28273..30708+ (Nannochloropsis oceanica)
AGGCCCCCTTGGTTCTTTTGATTTGGTCATCACTTGGCCCAGCATCAACA
CAGCATCAACCCAGCACCAGCCCAGATCAACCCAGCACCAGTCCAGCATC
AATCCAGCACCAGCCTAGCATCAACCCAGCACCAGCCCAGCATCAACACT
TAAGGGGCTGATTTACCGGTAAATCGGCCAAACCCTACTTATAGGGTAAA
GCACAGCTAATACATGAGACTCTCACGCATAATTCTGTTTACTATCCTAA
TCTTAAACTTGTATAGATAAATTCGTAGCCTGTGCACCAAATTTCCACTT
CTAGGCACACAATTATTTGACGGACTATACAGGAAGTGATGTAAGTTTTT
TATTGTTTTTATTTTTGGGGGTTTTGATCACCACTTTGGGCTTTGCCATC
GGCATGGTGACATCCACTTCTATCATATTTTGAGCCCCAGAATAAGCCCG
CCACGGATGACGGGTAGATGCCGGCATCGGGCCACTGACGGTTCCGCGGA
ATAAAACGGCAAAATATACGTGTTCGAAAGAAAGAACAACAATCTTCCCT
TTTCCCATATCAAGTTCCGCCCGCGATCCATTAGTCACCATGACGGATGT
AGGCATCACTTTTCTTCCTCCATTAAGAGGGGAGGGAGGCGGTGATTAGA
TCTGCATACGCTACGTGTGTTTCTTTTGTTAGATTTTGCGTAAATCAGTC
ACCAAGAGATAGGCGGTCACGTTTCCTATTGGTCGCAATATCGGATGTAG
ACATCACTTTTATTTTTTAATATATAGTCGCCATAACGGATGTAGGTATC
ACTTTTATTTATTATACATAGTCGCCATAGTGCTTTTGTTTTTGTTTTTG
TTTTTGTTTTTTAAATTCAAGACTTATTATACCAATCGAATTATCTTATG
ACGTAGAATAAGGATGTAAAATAGCAGGTATTGTTTCGTAATTAAATTAT
GTGATATAAAAGAAAATAAGCCTCATATCCTATAGACTGGTCACACATCA
ATCTTTCTATGAATGTACACAGAATGAGGTATATTATATGGATATCACTG
CAATATAATCTCACGGGAGCTCGAACTCTTTTCCATTGCACACCATGCCA
TATAGGGACGATGACCGTTAAAAGGCGCTGCACTATAAATTTCAAAAACT
ACTGGACTATAGAATTTACTGCAAACCTATTACTGGCATCTGGGATCTTC
CTGCTTTTGTATTTTTCAGATTGGCATAAGTCGTACTCAACAACGAGAAG
CAACAGAGGGAGTGGACATAAAAAAATATTTTCCAGCTACTTTCCTTATC
CTATTGAAACAATCGTCTCGGTAAAAGTACATAACGACAAGTATTCTGTA
AGGGACTTTCTTTGGTCTTGGCTGGCATTCTGGCCCCCCATATATGGACA
AATCACATTCATAGTGAACTCTCAGAAGGCTGTATCGAATATAGATTCTT
GTCTTGAAGGAGCACGGGTGAAACCCTTCATAAAATATTTGAATGACAGT
GGATCTGCGGAACCAAAAACTTATTATAAGTTCATATCTGACTTATACAC
GAATGCTACTGTAATCGCATTTTTTGATGATGATGCTTGTCTACGGGACC
ACGTGATCCCACTTGATCTATTTACTCCCGACAAGAAGATAATTGCTCGT
GGTGTGTCTTGGGGAGCCGTTAATGACGAGTGGCTTGACTCATACGGTGC
TCACAGCGCACTTTTCAACATCTCTAGCACGGATAATTACATGATCAATT
TTCCAATCCTTGTCTGGCGAGATATGCTCTCTGACTTTCGAACCCATGTG
AACCAATACGTACATGGCGTTAGCGATAATTCCATTGCATTGTTCCAGGA
CGCAATGAACAGCATCATATTACAGGATAATCATCGAACGTTCAAAGGTG
TTGTATGTGAATTCTGTTTATTACTAAATTTTGCGCATGACAATCCGAAA
TGGAAGTCAAGATACCAGTTTGATATATGGCCAACAAAACATCCTTTGTA
TTCGGCATCACAACACCACTTCAAAACATGCAGGAAACCTGAAGCTCTAT
GGGAGAGAGACAATGATAAATTTCTTCCAAATTTGGTGACAAGTGCAATC
TTCCCATTTAGTTTTCATCCAGCATATGAGAAATTGGCCAATAGATATTA
TAATAATGCGTCTTTGCGCATAATACACGACATGATTTACGATCGTTCCC
AAAAGCTACAACAATTTGCTAGTAACCATCCAATGTCAGACTTGTCGTGG
TATACGAGGTGGAACGATGATATTGCGGCAGTCTGGTATCGATGCTTACG
CTCGGGTTAGCTATATGAGTTTTATTTCCTACCACTGAGTTATGTGTGGT
GTACGCCTATGCCATTTTACGACTTATTTTCAAGTTTTAGCAACCAAGGG
CGCTTTAATCAAAGAAACAATGAGTTATCCCTTGTA

Coding sequence (CDS) from alignment at scaffold_154:28273..30708+

>mRNA_11476 ID=mRNA_11476|Name=jgi.p|Nanoce1779_2|618349|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_154:28273..30708+ (Nannochloropsis oceanica)
ATGAATGTACACAGAATGAGGTATATTATATGGATATCACTGCAATATAA
TCTCACGGGAGCTCGAACTCTTTTCCATTGCACACCATGCCATATAGGGA
CGATGACCGTTAAAAGGCGCTGCACTATAAATTTCAAAAACTACTGGACT
ATAGAATTTACTGCAAACCTATTACTGGCATCTGGGATCTTCCTGCTTTT
GTATTTTTCAGATTGGCATAAGTCGTACTCAACAACGAGAAGCAACAGAG
GGAGTGGACATAAAAAAATATTTTCCAGCTACTTTCCTTATCCTATTGAA
ACAATCGTCTCGGTAAAAGTACATAACGACAAGTATTCTGTAAGGGACTT
TCTTTGGTCTTGGCTGGCATTCTGGCCCCCCATATATGGACAAATCACAT
TCATAGTGAACTCTCAGAAGGCTGTATCGAATATAGATTCTTGTCTTGAA
GGAGCACGGGTGAAACCCTTCATAAAATATTTGAATGACAGTGGATCTGC
GGAACCAAAAACTTATTATAAGTTCATATCTGACTTATACACGAATGCTA
CTGTAATCGCATTTTTTGATGATGATGCTTGTCTACGGGACCACGTGATC
CCACTTGATCTATTTACTCCCGACAAGAAGATAATTGCTCGTGGTGTGTC
TTGGGGAGCCGTTAATGACGAGTGGCTTGACTCATACGGTGCTCACAGCG
CACTTTTCAACATCTCTAGCACGGATAATTACATGATCAATTTTCCAATC
CTTGTCTGGCGAGATATGCTCTCTGACTTTCGAACCCATGTGAACCAATA
CGTACATGGCGTTAGCGATAATTCCATTGCATTGTTCCAGGACGCAATGA
ACAGCATCATATTACAGGATAATCATCGAACGTTCAAAGGTGTTGTATGT
GAATTCTGTTTATTACTAAATTTTGCGCATGACAATCCGAAATGGAAGTC
AAGATACCAGTTTGATATATGGCCAACAAAACATCCTTTGTATTCGGCAT
CACAACACCACTTCAAAACATGCAGGAAACCTGAAGCTCTATGGGAGAGA
GACAATGATAAATTTCTTCCAAATTTGGTGACAAGTGCAATCTTCCCATT
TAGTTTTCATCCAGCATATGAGAAATTGGCCAATAGATATTATAATAATG
CGTCTTTGCGCATAATACACGACATGATTTACGATCGTTCCCAAAAGCTA
CAACAATTTGCTAGTAACCATCCAATGTCAGACTTGTCGTGGTATACGAG
GTGGAACGATGATATTGCGGCAGTCTGGTATCGATGCTTACGCTCGGGTT
AG

Synonyms

Publications