jgi.p|Nanoce1779_2|618302, mRNA_11465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618302
Unique NamemRNA_11465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length669
Alignment locationscaffold_154:6964..7632 +

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Properties
Property NameValue
TranscriptId618388
TrackFilteredModels2
ProteinId618302
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:6964..7632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618302gene_11465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618302mRNA_11465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11465CDS_11465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11465 ID=mRNA_11465|Name=jgi.p|Nanoce1779_2|618302|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
AGGATTACGAATGAGCACAGGCACCGCAAAAACTAAGAAAAAGCGACAAT
GGATGACATCGACGCAAGCCGCGGCCGTGGCGGCTGCTTTCGAGGCTTGG
GCCGGCGATTGGCGGCAGCCGGGAGACAAGGACCGGGAGATCGATGCCCT
GGCCGCCGCCTTGTCTCTGCCCCCACGGACCATCAAGAAGCGATTTACCT
ACCTCCATCAGAAGAATAAAAAAAATATTGCCGCCAAAGAAAACAAAACC
GAGAAGACATTGGACAAGAAACGGGAATGGTTGACGCCGGGGCAAGCGCA
GGAGATAGCGGCTGCGTTCGAGGAATGGGGTGGAGTGTGGGAAGAGAGGG
AGGAAGAGGTGGCTCGACTAGCTACATCCTTAGGCTTAGAGAAGCGTAAG
GTCAAGAAGCACTGTGCATACTTGCGAAGTAAAAAAAAGGAGAGGGGCGG
TGCTGCAGGTGAGGAAGGGAAGGAAGGCGCGGGTTTGTCGTTGCCCAGTC
TTCCCCTCCTCTCTCCCCTCCTTCCTCCCCCCCCTTCTCCTTCATGTGTG
GCCCGCTCTTCCCTGACAGAGGTCAGATTGCAAGCGGTAGAGGTCGACAA
CGAGGATAGCGTCCACGTGTATATCTGACCGTGGACAAAACCAACTGAGA
CGATGTAATGGAAGGCGCC
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protein sequence of jgi.p|Nanoce1779_2|618302

>mRNA_11465-protein ID=mRNA_11465-protein|Name=jgi.p|Nanoce1779_2|618302|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MSTGTAKTKKKRQWMTSTQAAAVAAAFEAWAGDWRQPGDKDREIDALAAA
LSLPPRTIKKRFTYLHQKNKKNIAAKENKTEKTLDKKREWLTPGQAQEIA
AAFEEWGGVWEEREEEVARLATSLGLEKRKVKKHCAYLRSKKKERGGAAG
EEGKEGAGLSLPSLPLLSPLLPPPPSPSCVARSSLTEVRLQAVEVDNEDS
VHVYI*
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mRNA from alignment at scaffold_154:6964..7632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11465 ID=mRNA_11465|Name=jgi.p|Nanoce1779_2|618302|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at scaffold_154:6964..7632+ (Nannochloropsis oceanica)
AGGATTACGAATGAGCACAGGCACCGCAAAAACTAAGAAAAAGCGACAAT
GGATGACATCGACGCAAGCCGCGGCCGTGGCGGCTGCTTTCGAGGCTTGG
GCCGGCGATTGGCGGCAGCCGGGAGACAAGGACCGGGAGATCGATGCCCT
GGCCGCCGCCTTGTCTCTGCCCCCACGGACCATCAAGAAGCGATTTACCT
ACCTCCATCAGAAGAATAAAAAAAATATTGCCGCCAAAGAAAACAAAACC
GAGAAGACATTGGACAAGAAACGGGAATGGTTGACGCCGGGGCAAGCGCA
GGAGATAGCGGCTGCGTTCGAGGAATGGGGTGGAGTGTGGGAAGAGAGGG
AGGAAGAGGTGGCTCGACTAGCTACATCCTTAGGCTTAGAGAAGCGTAAG
GTCAAGAAGCACTGTGCATACTTGCGAAGTAAAAAAAAGGAGAGGGGCGG
TGCTGCAGGTGAGGAAGGGAAGGAAGGCGCGGGTTTGTCGTTGCCCAGTC
TTCCCCTCCTCTCTCCCCTCCTTCCTCCCCCCCCTTCTCCTTCATGTGTG
GCCCGCTCTTCCCTGACAGAGGTCAGATTGCAAGCGGTAGAGGTCGACAA
CGAGGATAGCGTCCACGTGTATATCTGACCGTGGACAAAACCAACTGAGA
CGATGTAATGGAAGGCGCC
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Coding sequence (CDS) from alignment at scaffold_154:6964..7632+

>mRNA_11465 ID=mRNA_11465|Name=jgi.p|Nanoce1779_2|618302|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_154:6964..7632+ (Nannochloropsis oceanica)
ATGAGCACAGGCACCGCAAAAACTAAGAAAAAGCGACAATGGATGACATC
GACGCAAGCCGCGGCCGTGGCGGCTGCTTTCGAGGCTTGGGCCGGCGATT
GGCGGCAGCCGGGAGACAAGGACCGGGAGATCGATGCCCTGGCCGCCGCC
TTGTCTCTGCCCCCACGGACCATCAAGAAGCGATTTACCTACCTCCATCA
GAAGAATAAAAAAAATATTGCCGCCAAAGAAAACAAAACCGAGAAGACAT
TGGACAAGAAACGGGAATGGTTGACGCCGGGGCAAGCGCAGGAGATAGCG
GCTGCGTTCGAGGAATGGGGTGGAGTGTGGGAAGAGAGGGAGGAAGAGGT
GGCTCGACTAGCTACATCCTTAGGCTTAGAGAAGCGTAAGGTCAAGAAGC
ACTGTGCATACTTGCGAAGTAAAAAAAAGGAGAGGGGCGGTGCTGCAGGT
GAGGAAGGGAAGGAAGGCGCGGGTTTGTCGTTGCCCAGTCTTCCCCTCCT
CTCTCCCCTCCTTCCTCCCCCCCCTTCTCCTTCATGTGTGGCCCGCTCTT
CCCTGACAGAGGTCAGATTGCAAGCGGTAGAGGTCGACAACGAGGATAGC
GTCCACGTGTATATCTGA
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Synonyms
Publications