jgi.p|Nanoce1779_2|618335, mRNA_11470 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618335
Unique NamemRNA_11470
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1276
Alignment locationscaffold_154:18699..19974 -

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Properties
Property NameValue
TranscriptId618421
TrackFilteredModels2
ProteinId618335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:18699..19974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618335gene_11470Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618335mRNA_11470-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11470CDS_11470Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11470 ID=mRNA_11470|Name=jgi.p|Nanoce1779_2|618335|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp
AGGTATCAAGCTGATGAGTAGAACATGCGGAGAAACAGTCACGGGAGAGT
AAGCATTACTTATCTCATCGCTGCTTGCACGTGGTGCCTGCACCTATTTT
CGCGCAGCAAAAGCCAACTTGTTCGCACACTGAAAGCGATTTCGTTCTCA
CAATCACGATCCTGTGAAAGATGAAACTCAAACATCTTATATTGGCAGTG
GCAACGTCTATACTGGGCTTTGCATTACCAATGTTTCCACTACAAAGGAT
TCTTGTCATGTCCAGTTTTTTGCGGGCCACGGCGCCCGCTGATATAATGC
AATATCATTTTATTCTCATGTATGACAAACCACCAGTCGCTTCATATTGT
GCAATTGAGTCCTTGAGACGCGTCAGTGGAGCAAAAATAATTGTGTGGAC
AAACGCGACGCAAATTCCCAGCTACATATCCGAGAATACTGACATCCGGA
ATTTGAACATCACCGACGAATTTTACGGTACTCCGTTTCAAAATCTGGAG
TTTAATGGAACTTTTTGGAGGCAGAACATTGCAAATGCGCTGAGGTTGTC
GGTAGTATATAAATATGGCGGTATGTACATGGACTCAGATTTTATTGTAT
TGCGTAGTCCTGACGACATTGTTGATGGCATAGGACTTGAAAGTGAAACT
GGGTACAACAATGCAGCTTTCAAGTTCAAAAGGCCATTCGCCCCTTTCCT
TGACGTGTGTATGCACGATTTCGTCGATAAGTATCATGGCTCCAGTTGGG
GACACCAAGGACCCATTTTATTCACAAGAATCCAACATGCATGTAAGCAG
AAGGAAGCTTCAGGGGAGCATGCAAATTGTCCATCAACGTGGCCGAGGGA
GTCATTCTACCCTATAAATCATCACAATCGGTCGTTTTTCTGGGGCACTA
ACAACTTAGAGCTAGATGGTAGTATTGCTCTACATGTATGGAATAAATTG
ACCGTGAAAGATGAGAGAAGAATCTGCGGCATTCCCGAAGAATATAATTC
GTCGGCGATAGGCATCTTGCGCGCAGTGCATTGTCCTAAGACCTTTGAAT
TGCTGCAAGAAAAATGCATGTTCCTACCTGGATGATTCTCTGAAGCTGAT
GGCTGAGTCAGAGTGAAACATAGTTTAAATTTTGAAGTACATAGAAAGAG
AGGAAATGCATGTAGATGAAATGTGGGCTGCAAATTGTGAGGTGATCGCT
CAAGGACAGAGAATATTTAGGGTCAATGCCAGTGTGAGAGTACAAAGTAA
AAAGTATGGGATTATTGCCAGATAAA
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protein sequence of jgi.p|Nanoce1779_2|618335

>mRNA_11470-protein ID=mRNA_11470-protein|Name=jgi.p|Nanoce1779_2|618335|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MKLKHLILAVATSILGFALPMFPLQRILVMSSFLRATAPADIMQYHFILM
YDKPPVASYCAIESLRRVSGAKIIVWTNATQIPSYISENTDIRNLNITDE
FYGTPFQNLEFNGTFWRQNIANALRLSVVYKYGGMYMDSDFIVLRSPDDI
VDGIGLESETGYNNAAFKFKRPFAPFLDVCMHDFVDKYHGSSWGHQGPIL
FTRIQHACKQKEASGEHANCPSTWPRESFYPINHHNRSFFWGTNNLELDG
SIALHVWNKLTVKDERRICGIPEEYNSSAIGILRAVHCPKTFELLQEKCM
FLPG*
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mRNA from alignment at scaffold_154:18699..19974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11470 ID=mRNA_11470|Name=jgi.p|Nanoce1779_2|618335|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_154:18699..19974- (Nannochloropsis oceanica)
AGGTATCAAGCTGATGAGTAGAACATGCGGAGAAACAGTCACGGGAGAGT
AAGCATTACTTATCTCATCGCTGCTTGCACGTGGTGCCTGCACCTATTTT
CGCGCAGCAAAAGCCAACTTGTTCGCACACTGAAAGCGATTTCGTTCTCA
CAATCACGATCCTGTGAAAGATGAAACTCAAACATCTTATATTGGCAGTG
GCAACGTCTATACTGGGCTTTGCATTACCAATGTTTCCACTACAAAGGAT
TCTTGTCATGTCCAGTTTTTTGCGGGCCACGGCGCCCGCTGATATAATGC
AATATCATTTTATTCTCATGTATGACAAACCACCAGTCGCTTCATATTGT
GCAATTGAGTCCTTGAGACGCGTCAGTGGAGCAAAAATAATTGTGTGGAC
AAACGCGACGCAAATTCCCAGCTACATATCCGAGAATACTGACATCCGGA
ATTTGAACATCACCGACGAATTTTACGGTACTCCGTTTCAAAATCTGGAG
TTTAATGGAACTTTTTGGAGGCAGAACATTGCAAATGCGCTGAGGTTGTC
GGTAGTATATAAATATGGCGGTATGTACATGGACTCAGATTTTATTGTAT
TGCGTAGTCCTGACGACATTGTTGATGGCATAGGACTTGAAAGTGAAACT
GGGTACAACAATGCAGCTTTCAAGTTCAAAAGGCCATTCGCCCCTTTCCT
TGACGTGTGTATGCACGATTTCGTCGATAAGTATCATGGCTCCAGTTGGG
GACACCAAGGACCCATTTTATTCACAAGAATCCAACATGCATGTAAGCAG
AAGGAAGCTTCAGGGGAGCATGCAAATTGTCCATCAACGTGGCCGAGGGA
GTCATTCTACCCTATAAATCATCACAATCGGTCGTTTTTCTGGGGCACTA
ACAACTTAGAGCTAGATGGTAGTATTGCTCTACATGTATGGAATAAATTG
ACCGTGAAAGATGAGAGAAGAATCTGCGGCATTCCCGAAGAATATAATTC
GTCGGCGATAGGCATCTTGCGCGCAGTGCATTGTCCTAAGACCTTTGAAT
TGCTGCAAGAAAAATGCATGTTCCTACCTGGATGATTCTCTGAAGCTGAT
GGCTGAGTCAGAGTGAAACATAGTTTAAATTTTGAAGTACATAGAAAGAG
AGGAAATGCATGTAGATGAAATGTGGGCTGCAAATTGTGAGGTGATCGCT
CAAGGACAGAGAATATTTAGGGTCAATGCCAGTGTGAGAGTACAAAGTAA
AAAGTATGGGATTATTGCCAGATAAA
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Coding sequence (CDS) from alignment at scaffold_154:18699..19974-

>mRNA_11470 ID=mRNA_11470|Name=jgi.p|Nanoce1779_2|618335|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_154:18699..19974- (Nannochloropsis oceanica)
ATGAAACTCAAACATCTTATATTGGCAGTGGCAACGTCTATACTGGGCTT
TGCATTACCAATGTTTCCACTACAAAGGATTCTTGTCATGTCCAGTTTTT
TGCGGGCCACGGCGCCCGCTGATATAATGCAATATCATTTTATTCTCATG
TATGACAAACCACCAGTCGCTTCATATTGTGCAATTGAGTCCTTGAGACG
CGTCAGTGGAGCAAAAATAATTGTGTGGACAAACGCGACGCAAATTCCCA
GCTACATATCCGAGAATACTGACATCCGGAATTTGAACATCACCGACGAA
TTTTACGGTACTCCGTTTCAAAATCTGGAGTTTAATGGAACTTTTTGGAG
GCAGAACATTGCAAATGCGCTGAGGTTGTCGGTAGTATATAAATATGGCG
GTATGTACATGGACTCAGATTTTATTGTATTGCGTAGTCCTGACGACATT
GTTGATGGCATAGGACTTGAAAGTGAAACTGGGTACAACAATGCAGCTTT
CAAGTTCAAAAGGCCATTCGCCCCTTTCCTTGACGTGTGTATGCACGATT
TCGTCGATAAGTATCATGGCTCCAGTTGGGGACACCAAGGACCCATTTTA
TTCACAAGAATCCAACATGCATGTAAGCAGAAGGAAGCTTCAGGGGAGCA
TGCAAATTGTCCATCAACGTGGCCGAGGGAGTCATTCTACCCTATAAATC
ATCACAATCGGTCGTTTTTCTGGGGCACTAACAACTTAGAGCTAGATGGT
AGTATTGCTCTACATGTATGGAATAAATTGACCGTGAAAGATGAGAGAAG
AATCTGCGGCATTCCCGAAGAATATAATTCGTCGGCGATAGGCATCTTGC
GCGCAGTGCATTGTCCTAAGACCTTTGAATTGCTGCAAGAAAAATGCATG
TTCCTACCTGGATGA
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Synonyms
Publications