scaffold_137, scaffold_137 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_137
Unique Name	scaffold_137
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	33482
Alignment location	jgi.p\|Nanoce1779_2\|73928:12268..15001 -
Alignment location	jgi.p\|Nanoce1779_2\|73928:12268..15001 -
Alignment location	CDS_12040:14745..14852 -
Alignment location	CDS_12040:14380..14670 -
Alignment location	CDS_12040:14135..14239 -
Alignment location	CDS_12040:13855..13924 -
Alignment location	CDS_12040:13574..13672 -
Alignment location	CDS_12040:13205..13319 -
Alignment location	CDS_12040:12811..12921 -
Alignment location	CDS_12040:12518..12632 -
Alignment location	jgi.p\|Nanoce1779_2\|73954:16036..17807 +
Alignment location	jgi.p\|Nanoce1779_2\|73954:16036..17807 +
Alignment location	CDS_12041:16428..16605 +
Alignment location	CDS_12041:16824..16951 +
Alignment location	CDS_12041:17074..17172 +
Alignment location	CDS_12041:17405..17464 +
Alignment location	CDS_12041:17592..17675 +
Alignment location	jgi.p\|Nanoce1779_2\|73985:27570..29307 +
Alignment location	jgi.p\|Nanoce1779_2\|73985:27570..29307 +
Alignment location	CDS_12044:27889..27936 +
Alignment location	CDS_12044:28166..28300 +
Alignment location	CDS_12044:28381..28486 +
Alignment location	CDS_12044:28624..28691 +
Alignment location	CDS_12044:28803..28850 +
Alignment location	CDS_12044:28992..29201 +
Alignment location	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
Alignment location	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
Alignment location	CDS_12036:2227..2469 -
Alignment location	CDS_12036:1963..2154 -
Alignment location	jgi.p\|Nanoce1779_2\|617396:4892..7341 +
Alignment location	jgi.p\|Nanoce1779_2\|617396:4892..7341 +
Alignment location	CDS_12037:5260..5341 +
Alignment location	CDS_12037:5965..6620 +
Alignment location	CDS_12037:6915..7031 +
Alignment location	jgi.p\|Nanoce1779_2\|617400:7342..9935 -
Alignment location	jgi.p\|Nanoce1779_2\|617400:7342..9935 -
Alignment location	CDS_12038:9855..9923 -
Alignment location	CDS_12038:9782..9838 -
Alignment location	CDS_12038:9550..9600 -
Alignment location	CDS_12038:9267..9418 -
Alignment location	CDS_12038:8977..9058 -
Alignment location	CDS_12038:7995..8103 -
Alignment location	CDS_12038:7638..7837 -
Alignment location	jgi.p\|Nanoce1779_2\|617402:9859..12103 -
Alignment location	jgi.p\|Nanoce1779_2\|617402:9859..12103 -
Alignment location	CDS_12039:10112..10489 -
Alignment location	jgi.p\|Nanoce1779_2\|617415:22582..23137 +
Alignment location	jgi.p\|Nanoce1779_2\|617415:22582..23137 +
Alignment location	CDS_12042:22651..22809 +
Alignment location	jgi.p\|Nanoce1779_2\|675685:23201..27637 -
Alignment location	jgi.p\|Nanoce1779_2\|675685:23201..27637 -
Alignment location	CDS_12043:27570..27618 -
Alignment location	CDS_12043:26709..27483 -
Alignment location	CDS_12043:25291..26632 -
Alignment location	CDS_12043:24954..25083 -
Alignment location	CDS_12043:24499..24701 -
Alignment location	CDS_12043:24164..24336 -
Alignment location	CDS_12043:23754..23952 -
Alignment location	CDS_12043:23403..23508 -
Alignment location	CDS_12043:23201..23307 -
Alignment location	jgi.p\|Nanoce1779_2\|675687:30217..33394 -
Alignment location	jgi.p\|Nanoce1779_2\|675687:30217..33394 -
Alignment location	CDS_12045:33272..33394 -
Alignment location	CDS_12045:33021..33129 -
Alignment location	CDS_12045:32519..32703 -
Alignment location	CDS_12045:32303..32400 -
Alignment location	CDS_12045:32137..32176 -
Alignment location	CDS_12045:31902..31949 -
Alignment location	CDS_12045:31460..31642 -
Alignment location	CDS_12045:31080..31288 -
Alignment location	CDS_12045:30793..30893 -
Alignment location	CDS_12045:30447..30622 -
Alignment location	jgi.p\|Nanoce1779_2\|73928:12518..14852 -
Alignment location	jgi.p\|Nanoce1779_2\|73954:16428..17675 +
Alignment location	jgi.p\|Nanoce1779_2\|73985:27889..29201 +
Alignment location	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
Alignment location	jgi.p\|Nanoce1779_2\|617396:5260..7031 +
Alignment location	jgi.p\|Nanoce1779_2\|617400:7638..9923 -
Alignment location	jgi.p\|Nanoce1779_2\|617402:10112..10489 -
Alignment location	jgi.p\|Nanoce1779_2\|617415:22651..22809 +
Alignment location	jgi.p\|Nanoce1779_2\|675685:23201..27618 -
Alignment location	jgi.p\|Nanoce1779_2\|675687:30447..33394 -
Alignment location	ncniL016:1964..33394 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|73928	gene	jgi.p\|Nanoce1779_2\|73928:12268..15001 -
jgi.p\|Nanoce1779_2\|73928	mRNA	jgi.p\|Nanoce1779_2\|73928:12268..15001 -
CDS_12040	CDS	CDS_12040:14745..14852 -
CDS_12040	CDS	CDS_12040:14380..14670 -
CDS_12040	CDS	CDS_12040:14135..14239 -
CDS_12040	CDS	CDS_12040:13855..13924 -
CDS_12040	CDS	CDS_12040:13574..13672 -
CDS_12040	CDS	CDS_12040:13205..13319 -
CDS_12040	CDS	CDS_12040:12811..12921 -
CDS_12040	CDS	CDS_12040:12518..12632 -
jgi.p\|Nanoce1779_2\|73954	gene	jgi.p\|Nanoce1779_2\|73954:16036..17807 +
jgi.p\|Nanoce1779_2\|73954	mRNA	jgi.p\|Nanoce1779_2\|73954:16036..17807 +
CDS_12041	CDS	CDS_12041:16428..16605 +
CDS_12041	CDS	CDS_12041:16824..16951 +
CDS_12041	CDS	CDS_12041:17074..17172 +
CDS_12041	CDS	CDS_12041:17405..17464 +
CDS_12041	CDS	CDS_12041:17592..17675 +
jgi.p\|Nanoce1779_2\|73985	gene	jgi.p\|Nanoce1779_2\|73985:27570..29307 +
jgi.p\|Nanoce1779_2\|73985	mRNA	jgi.p\|Nanoce1779_2\|73985:27570..29307 +
CDS_12044	CDS	CDS_12044:27889..27936 +
CDS_12044	CDS	CDS_12044:28166..28300 +
CDS_12044	CDS	CDS_12044:28381..28486 +
CDS_12044	CDS	CDS_12044:28624..28691 +
CDS_12044	CDS	CDS_12044:28803..28850 +
CDS_12044	CDS	CDS_12044:28992..29201 +
jgi.p\|Nanoce1779_2\|570690	gene	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
jgi.p\|Nanoce1779_2\|570690	mRNA	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
CDS_12036	CDS	CDS_12036:2227..2469 -
CDS_12036	CDS	CDS_12036:1963..2154 -
jgi.p\|Nanoce1779_2\|617396	gene	jgi.p\|Nanoce1779_2\|617396:4892..7341 +
jgi.p\|Nanoce1779_2\|617396	mRNA	jgi.p\|Nanoce1779_2\|617396:4892..7341 +
CDS_12037	CDS	CDS_12037:5260..5341 +
CDS_12037	CDS	CDS_12037:5965..6620 +
CDS_12037	CDS	CDS_12037:6915..7031 +
jgi.p\|Nanoce1779_2\|617400	gene	jgi.p\|Nanoce1779_2\|617400:7342..9935 -
jgi.p\|Nanoce1779_2\|617400	mRNA	jgi.p\|Nanoce1779_2\|617400:7342..9935 -
CDS_12038	CDS	CDS_12038:9855..9923 -
CDS_12038	CDS	CDS_12038:9782..9838 -
CDS_12038	CDS	CDS_12038:9550..9600 -
CDS_12038	CDS	CDS_12038:9267..9418 -
CDS_12038	CDS	CDS_12038:8977..9058 -
CDS_12038	CDS	CDS_12038:7995..8103 -
CDS_12038	CDS	CDS_12038:7638..7837 -
jgi.p\|Nanoce1779_2\|617402	gene	jgi.p\|Nanoce1779_2\|617402:9859..12103 -
jgi.p\|Nanoce1779_2\|617402	mRNA	jgi.p\|Nanoce1779_2\|617402:9859..12103 -
CDS_12039	CDS	CDS_12039:10112..10489 -
jgi.p\|Nanoce1779_2\|617415	gene	jgi.p\|Nanoce1779_2\|617415:22582..23137 +
jgi.p\|Nanoce1779_2\|617415	mRNA	jgi.p\|Nanoce1779_2\|617415:22582..23137 +
CDS_12042	CDS	CDS_12042:22651..22809 +
jgi.p\|Nanoce1779_2\|675685	gene	jgi.p\|Nanoce1779_2\|675685:23201..27637 -
jgi.p\|Nanoce1779_2\|675685	mRNA	jgi.p\|Nanoce1779_2\|675685:23201..27637 -
CDS_12043	CDS	CDS_12043:27570..27618 -
CDS_12043	CDS	CDS_12043:26709..27483 -
CDS_12043	CDS	CDS_12043:25291..26632 -
CDS_12043	CDS	CDS_12043:24954..25083 -
CDS_12043	CDS	CDS_12043:24499..24701 -
CDS_12043	CDS	CDS_12043:24164..24336 -
CDS_12043	CDS	CDS_12043:23754..23952 -
CDS_12043	CDS	CDS_12043:23403..23508 -
CDS_12043	CDS	CDS_12043:23201..23307 -
jgi.p\|Nanoce1779_2\|675687	gene	jgi.p\|Nanoce1779_2\|675687:30217..33394 -
jgi.p\|Nanoce1779_2\|675687	mRNA	jgi.p\|Nanoce1779_2\|675687:30217..33394 -
CDS_12045	CDS	CDS_12045:33272..33394 -
CDS_12045	CDS	CDS_12045:33021..33129 -
CDS_12045	CDS	CDS_12045:32519..32703 -
CDS_12045	CDS	CDS_12045:32303..32400 -
CDS_12045	CDS	CDS_12045:32137..32176 -
CDS_12045	CDS	CDS_12045:31902..31949 -
CDS_12045	CDS	CDS_12045:31460..31642 -
CDS_12045	CDS	CDS_12045:31080..31288 -
CDS_12045	CDS	CDS_12045:30793..30893 -
CDS_12045	CDS	CDS_12045:30447..30622 -
jgi.p\|Nanoce1779_2\|73928	polypeptide	jgi.p\|Nanoce1779_2\|73928:12518..14852 -
jgi.p\|Nanoce1779_2\|73954	polypeptide	jgi.p\|Nanoce1779_2\|73954:16428..17675 +
jgi.p\|Nanoce1779_2\|73985	polypeptide	jgi.p\|Nanoce1779_2\|73985:27889..29201 +
jgi.p\|Nanoce1779_2\|570690	polypeptide	jgi.p\|Nanoce1779_2\|570690:1963..2469 -
jgi.p\|Nanoce1779_2\|617396	polypeptide	jgi.p\|Nanoce1779_2\|617396:5260..7031 +
jgi.p\|Nanoce1779_2\|617400	polypeptide	jgi.p\|Nanoce1779_2\|617400:7638..9923 -
jgi.p\|Nanoce1779_2\|617402	polypeptide	jgi.p\|Nanoce1779_2\|617402:10112..10489 -
jgi.p\|Nanoce1779_2\|617415	polypeptide	jgi.p\|Nanoce1779_2\|617415:22651..22809 +
jgi.p\|Nanoce1779_2\|675685	polypeptide	jgi.p\|Nanoce1779_2\|675685:23201..27618 -
jgi.p\|Nanoce1779_2\|675687	polypeptide	jgi.p\|Nanoce1779_2\|675687:30447..33394 -
ncniL016	syntenic_region	ncniL016:1964..33394 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications