jgi.p|Nanoce1779_2|617396, mRNA_12037 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|617396
Unique Name	mRNA_12037
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1533
Alignment location	scaffold_137:4892..7341 +

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Properties


Property Name	Value
TranscriptId	617482
Track	FilteredModels2
ProteinId	617396

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_137	supercontig	scaffold_137:4892..7341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617396	gene_12037	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|617396	mRNA_12037-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12037	CDS_12037	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_137:4892..7341+
coding sequence from alignment at scaffold_137:4892..7341+

mRNA sequence

>mRNA_12037 ID=mRNA_12037|Name=jgi.p|Nanoce1779_2|617396|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
ATTCATAGAAACGCCCGAGCGTTTCGACCCAACGCCCTTTCGCCTGGTGA
CGATGGCAGTACTGGGATGTTCTGCAGCTGATACTGCGGCACAATGTACA
ATATAATTGCTTAGTGCGGGTTGTGAGGCAACTGTGGTTTGGGGGGGGGA
TAGCCATATGTTAAGCCGCAAAGAAACTTTCGTGTGATCGTTACGGGCCA
TAAGAATTGTACAGGTATGGCTTAGGGGGAGTCGAAACGCTCGGGAACAG
CGTTCCCGTGATATGTCCCAAGCGTTCAATATAAAACGTATTTACACATA
GCACGGATGGAGTCCAATTCGAGGTCTTCAAGCTTCACCTGTCCTGCATT
TAGTCAAATGCAGCATACATGGCCACATACAATGGCAGCATGAAGCTCGA
TCATGAACGTATCTTCCTGACCACCCATAGAAGACTACGTCGAGACACCC
GCTCCTCGGACTACCAGGGACCCAAGGATACCAATATGGGCGTGACTTTT
ACTGGCCGACTGCCCGGAGATCCCGAAGCAAATATTGCTCCGATGACCAA
GAATGCCATAAATTTGCTCTCTTATGGTGGTGGCAACGAGTTCGGGGCCT
GGTCATTAGCAGTCACACAGGCTGTGGCAGACTCGAGCAATTTGGATGCT
GTAATTGCCCTGAATTACGATGGCATTGTGATTGACGCAGAAGTCTACGC
AACAGGCCAAACAGTGACGGTAGCGGAGTGGAACACCATGTTTGCGGCGA
TCAAAGCGCGAAACTTATTGCTCATTGTGACCATCTCTCACTTCTCTCCG
TACGGAATGCCCAATGCTAACGCGCTTGTGGTCGATTGGCTGTCGAACCC
ACTTATCGATTACCTTTCCCCTCAATTGTACACCTCTGGGACCGAAACCG
AGAACGATTGGGAGGGTTTTAACAGCGCTTGGGTATCTGCTTCCACACCG
ATTGCCCCATCCATTGTTCAGAAATCATACTACGACCAGCTGGGTTCCAA
TTCGGTCACTACATACCTGCCCAACGCCAAGGGCTACCTGGTATGGAGTA
ACACACCGCCGCCAAAGCCGGGACCAGGCCCCACCTGCGTGAGTGGATAC
TTTCCGCAACTTCAGACGAACAATTATTACTGGACGACGGGCGTCTGCAC
GTACCAGGACCCCGTCGGCTGTGTGGGCAGTCCCATGGCCGGCGTGGAGT
ACACGTGCTGTCGCATTGAGTAAACGACGAGCAGGGTAGAATCGGCGCGA
GCAAGCGGGTATATGTGGTATACATACAAATGAGGGGGACATGAGACAAA
AAGATGTGACAGAATCTGGGCTACCCCCCCTTGTGTTGGGTGTATACGCA
GCTGCTCTTTTGTGCGTATGGTAGAACAATTTTGCTCTGATGAACGGAAA
GCTGGATGAAAGCATCAATAGAAAAAAGTATGCGAAAAATAAGAAGGGGT
GATTAGAATGCCGGGTAGGATGCGGTGACTATTTACAATCACCAGAAAAA
GCATAGGATTCAAAAGCGTAGCGCGAACATTGA

protein sequence of jgi.p|Nanoce1779_2|617396

>mRNA_12037-protein ID=mRNA_12037-protein|Name=jgi.p|Nanoce1779_2|617396|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MATYNGSMKLDHERIFLTTHRRLRRDTRSSDYQGPKDTNMGVTFTGRLPG
DPEANIAPMTKNAINLLSYGGGNEFGAWSLAVTQAVADSSNLDAVIALNY
DGIVIDAEVYATGQTVTVAEWNTMFAAIKARNLLLIVTISHFSPYGMPNA
NALVVDWLSNPLIDYLSPQLYTSGTETENDWEGFNSAWVSASTPIAPSIV
QKSYYDQLGSNSVTTYLPNAKGYLVWSNTPPPKPGPGPTCVSGYFPQLQT
NNYYWTTGVCTYQDPVGCVGSPMAGVEYTCCRIE*

mRNA from alignment at scaffold_137:4892..7341+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12037 ID=mRNA_12037|Name=jgi.p|Nanoce1779_2|617396|organism=Nannochloropsis oceanica|type=mRNA|length=2450bp|location=Sequence derived from alignment at scaffold_137:4892..7341+ (Nannochloropsis oceanica)
ATTCATAGAAACGCCCGAGCGTTTCGACCCAACGCCCTTTCGCCTGGTGA
CGATGGCAGTACTGGGATGTTCTGCAGCTGATACTGCGGCACAATGTACA
ATATAATTGCTTAGTGCGGGTTGTGAGGCAACTGTGGTTTGGGGGGGGGA
TAGCCATATGTTAAGCCGCAAAGAAACTTTCGTGTGATCGTTACGGGCCA
TAAGAATTGTACAGGTATGGCTTAGGGGGAGTCGAAACGCTCGGGAACAG
CGTTCCCGTGATATGTCCCAAGCGTTCAATATAAAACGTATTTACACATA
GCACGGATGGAGTCCAATTCGAGGTCTTCAAGCTTCACCTGTCCTGCATT
TAGTCAAATGCAGCATACATGGCCACATACAATGGCAGCATGAAGCTCGA
TCATGAACGTATCTTCCTGACCACCCATAGAAGACTACGTCGAGACACCC
GTACGGCCCACTGGCTCCTAAACCTCATATCCACCCTCTCATCCCTCGCC
ACAGAAGTTTGCAGTCATATGCTACGCACTGTGACCATCCCGCCACCTTT
GCCCTCGTGGCTGTCGTGGCAGCCTGGATAGCCCCTTGGAGCATGTGCTG
CCAATCGCTGTGTTCAGACCTGTCTGATGCCCTATGGAACCAATACAACG
GCGTCCATTAAGGCCAGCTGCCGCGATGCATGCAAGCTCACCGCCCCCAT
ACGTCGCCAATGCCTCAAACTGGAAAAATCTCTCTGGCGCGAGCCGACCA
AGACCTGCCGCAGGAGCCTGCGGAATATCAAGCGGGGCCTCGCACCACTG
ACCCTTAATGTTACGCTCACGACGCCAATCAACGCGACGACGAGTATTCC
TACCACTTACACATACACGTTTGATTCAGAGTGCGCCAAGGAGATCAGAC
GAGAGCAAAAATTTGAAAGAAAGACCTGCCGTGAGCTTATGTGCCCTTTG
AATGAATACTGGACTTTTGAGGCGCAAGGATGCCATGTTCATAACTCTGG
TGTAGCGGTAGCTGCTACGAAAAGCCCTCCCCTTCCAGCGCTTTTGCGGG
GTTTCTACAATTTTCCTGGACAGGCTCCTCGGACTACCAGGGACCCAAGG
ATACCAATATGGGCGTGACTTTTACTGGCCGACTGCCCGGAGATCCCGAA
GCAAATATTGCTCCGATGACCAAGAATGCCATAAATTTGCTCTCTTATGG
TGGTGGCAACGAGTTCGGGGCCTGGTCATTAGCAGTCACACAGGCTGTGG
CAGACTCGAGCAATTTGGATGCTGTAATTGCCCTGAATTACGATGGCATT
GTGATTGACGCAGAAGTCTACGCAACAGGCCAAACAGTGACGGTAGCGGA
GTGGAACACCATGTTTGCGGCGATCAAAGCGCGAAACTTATTGCTCATTG
TGACCATCTCTCACTTCTCTCCGTACGGAATGCCCAATGCTAACGCGCTT
GTGGTCGATTGGCTGTCGAACCCACTTATCGATTACCTTTCCCCTCAATT
GTACACCTCTGGGACCGAAACCGAGAACGATTGGGAGGGTTTTAACAGCG
CTTGGGTATCTGCTTCCACACCGATTGCCCCATCCATTGTTCAGAAATCA
TACTACGACCAGCTGGGTTCCAATTCGGTCACTACATACCTGCCCAACGC
CAAGGGCTACCTGGTATGGAGTAACACACCGCCGCCAAAGCCGGGACCAG
GCCCCACCTGCGTGAGTGGATACTTTCCGGTACGTGTGAGGGAGGTAAAG
GGAGGGGAGGAATGTTGGAGCCAAGAAAAGGTTGGCTTTGGGGCGCTCAT
AAAATTCTTGTACTAAGTTGACATGATGACTGTGCTCTGTAAATACCACT
ATTTCTATTTTCTCGTATATTTCTCTTTACTCTTGTCTCACTTCTTTGCA
TTTTCAGGCAAACACAACCGATTTATAAAATATGTAATATGCTCAAACAT
TTCTCCTCAATCCTCTCTTTCTCCCCAATATAGGGAAGCGGCTGTGCCTA
CATGTGCTCTTGGTGCGCACAAGCAACTTCAGACGAACAATTATTACTGG
ACGACGGGCGTCTGCACGTACCAGGACCCCGTCGGCTGTGTGGGCAGTCC
CATGGCCGGCGTGGAGTACACGTGCTGTCGCATTGAGTAAACGACGAGCA
GGGTAGAATCGGCGCGAGCAAGCGGGTATATGTGGTATACATACAAATGA
GGGGGACATGAGACAAAAAGATGTGACAGAATCTGGGCTACCCCCCCTTG
TGTTGGGTGTATACGCAGCTGCTCTTTTGTGCGTATGGTAGAACAATTTT
GCTCTGATGAACGGAAAGCTGGATGAAAGCATCAATAGAAAAAAGTATGC
GAAAAATAAGAAGGGGTGATTAGAATGCCGGGTAGGATGCGGTGACTATT
TACAATCACCAGAAAAAGCATAGGATTCAAAAGCGTAGCGCGAACATTGA

Coding sequence (CDS) from alignment at scaffold_137:4892..7341+

>mRNA_12037 ID=mRNA_12037|Name=jgi.p|Nanoce1779_2|617396|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_137:4892..7341+ (Nannochloropsis oceanica)
ATGGCCACATACAATGGCAGCATGAAGCTCGATCATGAACGTATCTTCCT
GACCACCCATAGAAGACTACGTCGAGACACCCGCTCCTCGGACTACCAGG
GACCCAAGGATACCAATATGGGCGTGACTTTTACTGGCCGACTGCCCGGA
GATCCCGAAGCAAATATTGCTCCGATGACCAAGAATGCCATAAATTTGCT
CTCTTATGGTGGTGGCAACGAGTTCGGGGCCTGGTCATTAGCAGTCACAC
AGGCTGTGGCAGACTCGAGCAATTTGGATGCTGTAATTGCCCTGAATTAC
GATGGCATTGTGATTGACGCAGAAGTCTACGCAACAGGCCAAACAGTGAC
GGTAGCGGAGTGGAACACCATGTTTGCGGCGATCAAAGCGCGAAACTTAT
TGCTCATTGTGACCATCTCTCACTTCTCTCCGTACGGAATGCCCAATGCT
AACGCGCTTGTGGTCGATTGGCTGTCGAACCCACTTATCGATTACCTTTC
CCCTCAATTGTACACCTCTGGGACCGAAACCGAGAACGATTGGGAGGGTT
TTAACAGCGCTTGGGTATCTGCTTCCACACCGATTGCCCCATCCATTGTT
CAGAAATCATACTACGACCAGCTGGGTTCCAATTCGGTCACTACATACCT
GCCCAACGCCAAGGGCTACCTGGTATGGAGTAACACACCGCCGCCAAAGC
CGGGACCAGGCCCCACCTGCGTGAGTGGATACTTTCCGCAACTTCAGACG
AACAATTATTACTGGACGACGGGCGTCTGCACGTACCAGGACCCCGTCGG
CTGTGTGGGCAGTCCCATGGCCGGCGTGGAGTACACGTGCTGTCGCATTG
AGTAAATGGCCACATACAATGGCAGCATGAAGCTCGATCATGAACGTATC
TTCCTGACCACCCATAGAAGACTACGTCGAGACACCCGCTCCTCGGACTA
CCAGGGACCCAAGGATACCAATATGGGCGTGACTTTTACTGGCCGACTGC
CCGGAGATCCCGAAGCAAATATTGCTCCGATGACCAAGAATGCCATAAAT
TTGCTCTCTTATGGTGGTGGCAACGAGTTCGGGGCCTGGTCATTAGCAGT
CACACAGGCTGTGGCAGACTCGAGCAATTTGGATGCTGTAATTGCCCTGA
ATTACGATGGCATTGTGATTGACGCAGAAGTCTACGCAACAGGCCAAACA
GTGACGGTAGCGGAGTGGAACACCATGTTTGCGGCGATCAAAGCGCGAAA
CTTATTGCTCATTGTGACCATCTCTCACTTCTCTCCGTACGGAATGCCCA
ATGCTAACGCGCTTGTGGTCGATTGGCTGTCGAACCCACTTATCGATTAC
CTTTCCCCTCAATTGTACACCTCTGGGACCGAAACCGAGAACGATTGGGA
GGGTTTTAACAGCGCTTGGGTATCTGCTTCCACACCGATTGCCCCATCCA
TTGTTCAGAAATCATACTACGACCAGCTGGGTTCCAATTCGGTCACTACA
TACCTGCCCAACGCCAAGGGCTACCTGGTATGGAGTAACACACCGCCGCC
AAAGCCGGGACCAGGCCCCACCTGCGTGAGTGGATACTTTCCGCAACTTC
AGACGAACAATTATTACTGGACGACGGGCGTCTGCACGTACCAGGACCCC
GTCGGCTGTGTGGGCAGTCCCATGGCCGGCGTGGAGTACACGTGCTGTCG
CATTGAGTAAATGGCCACATACAATGGCAGCATGAAGCTCGATCATGAAC
GTATCTTCCTGACCACCCATAGAAGACTACGTCGAGACACCCGCTCCTCG
GACTACCAGGGACCCAAGGATACCAATATGGGCGTGACTTTTACTGGCCG
ACTGCCCGGAGATCCCGAAGCAAATATTGCTCCGATGACCAAGAATGCCA
TAAATTTGCTCTCTTATGGTGGTGGCAACGAGTTCGGGGCCTGGTCATTA
GCAGTCACACAGGCTGTGGCAGACTCGAGCAATTTGGATGCTGTAATTGC
CCTGAATTACGATGGCATTGTGATTGACGCAGAAGTCTACGCAACAGGCC
AAACAGTGACGGTAGCGGAGTGGAACACCATGTTTGCGGCGATCAAAGCG
CGAAACTTATTGCTCATTGTGACCATCTCTCACTTCTCTCCGTACGGAAT
GCCCAATGCTAACGCGCTTGTGGTCGATTGGCTGTCGAACCCACTTATCG
ATTACCTTTCCCCTCAATTGTACACCTCTGGGACCGAAACCGAGAACGAT
TGGGAGGGTTTTAACAGCGCTTGGGTATCTGCTTCCACACCGATTGCCCC
ATCCATTGTTCAGAAATCATACTACGACCAGCTGGGTTCCAATTCGGTCA
CTACATACCTGCCCAACGCCAAGGGCTACCTGGTATGGAGTAACACACCG
CCGCCAAAGCCGGGACCAGGCCCCACCTGCGTGAGTGGATACTTTCCGCA
ACTTCAGACGAACAATTATTACTGGACGACGGGCGTCTGCACGTACCAGG
ACCCCGTCGGCTGTGTGGGCAGTCCCATGGCCGGCGTGGAGTACACGTGC
TGTCGCATTGAGTAA

Synonyms

Publications