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Properties
| Property Name | Value |
|---|
| TranscriptId | 617486 |
| Track | FilteredModels2 |
| ProteinId | 617400 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_137 | supercontig | scaffold_137:7342..9935 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12038 ID=mRNA_12038|Name=jgi.p|Nanoce1779_2|617400|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
AATAGTAGAGAGATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGGT
GGGTGCGGCGTGCAGGGCAACGCATGCGCAGCCCACGACCCTCCCGTCCT
TGGACGTCCATAATTGCTTGACATGTGCAGAAAGACAGACACAAAATGAC
CCATCTCCAGAAAGTCTCCAATCACAGCAAGAGCTTGAGGGAGCCCGTCT
TACCAGAAGCAGATGCTTCCTCCTCCTCCGCCTCCTTTTCCTCTCCCCCT
CCTTTGTGTCACCTGTCAAGTCGTTGCAGGAGCGTGTGCAGCAGGAGCAG
CAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGTATGAAGGCACTTCCGA
CCGAACGAAGCGGAAACTGGCCCACGTTGGCTCCGCCGAGTCAATCATGC
TCCAGAATGCCTTGATGTGGAAGCACCACACGTGCCCCAAGCTCTCCTCC
ACCTCCTCCGGCTCCTCCCTCCGCCCTCCGAAACCCCCTCCGCGCGAAGT
CATCAACCGTTACGGGGGGGTATGCCGGGCAGGTTACGCATCCGCCTACC
CCTCCCACCGCGGCAACACCGGCGGGAAAAGCCCTCCTACCTCTCTGTCT
CCCCCTCCCTCGACCCCTCCTAAGAACGACGAGACCATCGGGAGTGTCGG
CTATGAGTTACCGCACGGATTTGTGCCCGGCGTGGAGGCAGAGGTCAAGA
TTGACATTTCCCAATCCCATGAACATGTTTGATTAAACGAATAAGCGACA
AATATTTTTAAAATCCAACGGGTGCTGGGTTTGCATCAAGTTTCACGATA
TTCAGGAAAAATTACAATTCTACGAAAGGGAGAGGGCTGTGGGTAGGTAG
ATGTGTATCAGAAGAGGCTTCTCAAATGATGACACGAGTATAATACCAAG
ACATACGTAAAAAAGATGTGAAGTGCATATATGGGCGTTATATGTGTGCA
TGCACGGGAGGAGGATAGGATAAAGGCTTTCACCGGTCAAGCAGGAGGAA
ACGAAGGGTGAAGACGGAGTTCTTTAAT back to topprotein sequence of jgi.p|Nanoce1779_2|617400 >mRNA_12038-protein ID=mRNA_12038-protein|Name=jgi.p|Nanoce1779_2|617400|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MKRRLGLLGAFLVGAACRATHAQPTTLPSLDVHNCLTCAERQTQNDPSPE
SLQSQQELEGARLTRSRCFLLLRLLFLSPSFVSPVKSLQERVQQEQQEQQ
EQQEQQEYEGTSDRTKRKLAHVGSAESIMLQNALMWKHHTCPKLSSTSSG
SSLRPPKPPPREVINRYGGVCRAGYASAYPSHRGNTGGKSPPTSLSPPPS
TPPKNDETIGSVGYELPHGFVPGVEAEVKIDISQSHEHV* back to topmRNA from alignment at scaffold_137:7342..9935- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12038 ID=mRNA_12038|Name=jgi.p|Nanoce1779_2|617400|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp|location=Sequence derived from alignment at scaffold_137:7342..9935- (Nannochloropsis oceanica)
AATAGTAGAGAGATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGGT
GGGTGCGGCGTGCAGGGCAACGCATGCGCAGGTTTTCGACGTCCAAGCCC
ACGACCCTCCCGTCCTTGGACGTCCATAATTGCTTGACATGTGCAGAAAG
ACAGGTAAGGGACCGATGAACGGAAGGGTGGCCGACAAGGGGTGATTATT
TGTGTGATATATCGATATGTGGAGTGGCAGAAAGACGAAGGGACGGAGGA
AGGGAGGGAGGGATGGAGGAGAGGAGGGATGAAGAAAGCGTCGGAACTCA
CATGTAATTCTTGAATAAAACCACTCCATGCACAGACACAAAATGACCCA
TCTCCAGAAAGTCTCCAATCACAGCAAGAGCTTGAGGTAAGGAGCAAGGC
AGGGAGGGAGGGAGGGAGGGACGAAGGGCAGAGGATACATGGAGAAGGTC
GTAGCAGTGATACTCTGTAAAAAATAATAAATGTATCGTGATTACCCTCC
TACTCGGCATGAGACAGGGAGCCCGTCTTACCAGAAGCAGATGCTTCCTC
CTCCTCCGCCTCCTTTTCCTCTCCCCCTCCTTTGTGTCACCTGTCAAGTC
GTTGCAGGAGCGTGTGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGG
AGCAGCAGGAGTATGAAGGGTAAGAAAGCAGGGAGGGAGGGATGGAGACA
GGGAAGGCGAGAAGGAGGGCGGAAGAGAAGGGCAAAGTAACGTGAGAGCG
CTCGTCTCGACAACTGCCTCGGACGCCCGCATGGCTTGACCAACCTCCCT
TCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCC
CTCCCTCCCTCCCCACCTTCCCTCCAGCACTTCCGACCGAACGAAGCGGA
AACTGGCCCACGTTGGCTCCGCCGAGTCAATCATGCTCCAGAATGCCTTG
ATGTGGAAGGTAGGGAGGGAAGGAGGGAGTGTAGGGAGGGAGGAAGGAGA
GGAGGGGAGGAAGGACGGCAGCGGGAAAAAAATGCATTATGACAATGTTA
GAAAGAATTTGGGGCTTCTTTACCTTTCAAAATTTTCTCCACGCACATAT
ATAAATAAAAATACACACACACATATATATATATATATCAATATATGCAT
ATAATGACCGTATAACAATTAGGTGGATCGTGAGTTTCAAATGCGGCAGA
GACATTGGAAAAGCTATCAGGTATGTCCTCCCTCCCTCTTCCTCCTCCCC
TCCCCTCTCTCCCTCCCTCGCTTCTTCCCTCCCCTCCTGAACCGATAAAA
GCATCACCCAGCTTACGCCCTCCCTCCCTCCTCCCGCCCTCCCTCCCTCC
CTCCCTTCCTCCCTCCCCCCCTCCCCCAGGGCCTCGGACAGCGCCCGGAG
GAAGCCCAAGGAAGGAAAAGCGGGGGGAGGGGTGGATGCAAAAGCTCGGC
TCGGTACATCCAGGTAGGATACTTGAGAGGAAGGGAGGGAGTGAGGGAGG
GCAGAGAGGGAGAAAAGAGGGAGGTGGCTAGTCTTTCCAAGGGACCCGCC
AAGACTGACAAGCATCTACCCCTCCCTCCCTCCCTCCCTCTCTCGTTTCT
CACTCCTCACAGAAGGGCAAGAAGCTCCGGGGTGGCGACGAGAACAACAG
CACGAGCTCTACCAACACCCTCCGCCGCCGACTCCCCTCCTTCCAGTAAA
CAGACATCCCTTCCTCCTTCTCCTCCCCCCCTCCTCCTTCTCCTCCTTCT
CCTCCTTCTCCTCCCTGCCTTCCTCCTCCTTCTCCTCCTCCTCCTCCTCC
TCCCCCTCCTTCTCCTTCCTCACCCACCATAGCACCACACGTGCCCCAAG
CTCTCCTCCACCTCCTCCGGCTCCTCCCTCCGCCCTCCGAAACCCCCTCC
GCGCGAAGTCATCAACCGTTACGGGGGGGTATGCCGGGCAGGTAAGGAGG
GAGGGAAGGAGGGAAAATGGGATTGAATGGAAGAAGGATTTTTTTTGTGT
ACGCTTCTATTTATACTTCTGCTTACTTCTTCTCCTCCCTTTCTTCCTCC
CTTGCCCCCCTTCCCTCCCCTGTAAATCATGTGGATTTATCTGAACAGGT
TACGCATCCGCCTACCCCTCCCACCGCGGCAACACCGGCGGGAAAAGCCC
TCCTACCTCTCTGTCTCCCCCTCCCTCGACCCCTCCTAAGAACGACGAGA
CCATCGGGAGTGTCGGCTATGAGTTACCGCACGGATTTGTGCCCGGCGTG
GAGGCAGAGGTCAAGATTGACATTTCCCAATCCCATGAACATGTTTGATT
AAACGAATAAGCGACAAATATTTTTAAAATCCAACGGGTGCTGGGTTTGC
ATCAAGTTTCACGATATTCAGGAAAAATTACAATTCTACGAAAGGGAGAG
GGCTGTGGGTAGGTAGATGTGTATCAGAAGAGGCTTCTCAAATGATGACA
CGAGTATAATACCAAGACATACGTAAAAAAGATGTGAAGTGCATATATGG
GCGTTATATGTGTGCATGCACGGGAGGAGGATAGGATAAAGGCTTTCACC
GGTCAAGCAGGAGGAAACGAAGGGTGAAGACGGAGTTCTTTAAT back to topCoding sequence (CDS) from alignment at scaffold_137:7342..9935- >mRNA_12038 ID=mRNA_12038|Name=jgi.p|Nanoce1779_2|617400|organism=Nannochloropsis oceanica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_137:7342..9935- (Nannochloropsis oceanica)
GTTACGCATCCGCCTACCCCTCCCACCGCGGCAACACCGGCGGGAAAAGC
CCTCCTACCTCTCTGTCTCCCCCTCCCTCGACCCCTCCTAAGAACGACGA
GACCATCGGGAGTGTCGGCTATGAGTTACCGCACGGATTTGTGCCCGGCG
TGGAGGCAGAGGTCAAGATTGACATTTCCCAATCCCATGAACATGTTTGA
CACCACACGTGCCCCAAGCTCTCCTCCACCTCCTCCGGCTCCTCCCTCCG
CCCTCCGAAACCCCCTCCGCGCGAAGTCATCAACCGTTACGGGGGGGTAT
GCCGGGCAGCACTTCCGACCGAACGAAGCGGAAACTGGCCCACGTTGGCT
CCGCCGAGTCAATCATGCTCCAGAATGCCTTGATGTGGAAGGGAGCCCGT
CTTACCAGAAGCAGATGCTTCCTCCTCCTCCGCCTCCTTTTCCTCTCCCC
CTCCTTTGTGTCACCTGTCAAGTCGTTGCAGGAGCGTGTGCAGCAGGAGC
AGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGTATGAAGGACACAAA
ATGACCCATCTCCAGAAAGTCTCCAATCACAGCAAGAGCTTGAGCCCACG
ACCCTCCCGTCCTTGGACGTCCATAATTGCTTGACATGTGCAGAAAGACA
GATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGGTGGGTGCGGCGT
GCAGGGCAACGCATGCGCAGGTTACGCATCCGCCTACCCCTCCCACCGCG
GCAACACCGGCGGGAAAAGCCCTCCTACCTCTCTGTCTCCCCCTCCCTCG
ACCCCTCCTAAGAACGACGAGACCATCGGGAGTGTCGGCTATGAGTTACC
GCACGGATTTGTGCCCGGCGTGGAGGCAGAGGTCAAGATTGACATTTCCC
AATCCCATGAACATGTTTGACACCACACGTGCCCCAAGCTCTCCTCCACC
TCCTCCGGCTCCTCCCTCCGCCCTCCGAAACCCCCTCCGCGCGAAGTCAT
CAACCGTTACGGGGGGGTATGCCGGGCAGCACTTCCGACCGAACGAAGCG
GAAACTGGCCCACGTTGGCTCCGCCGAGTCAATCATGCTCCAGAATGCCT
TGATGTGGAAGGGAGCCCGTCTTACCAGAAGCAGATGCTTCCTCCTCCTC
CGCCTCCTTTTCCTCTCCCCCTCCTTTGTGTCACCTGTCAAGTCGTTGCA
GGAGCGTGTGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGC
AGGAGTATGAAGGACACAAAATGACCCATCTCCAGAAAGTCTCCAATCAC
AGCAAGAGCTTGAGCCCACGACCCTCCCGTCCTTGGACGTCCATAATTGC
TTGACATGTGCAGAAAGACAGATGAAGAGGAGACTAGGCCTCCTGGGCGC
CTTTCTGGTGGGTGCGGCGTGCAGGGCAACGCATGCGCAGGTTACGCATC
CGCCTACCCCTCCCACCGCGGCAACACCGGCGGGAAAAGCCCTCCTACCT
CTCTGTCTCCCCCTCCCTCGACCCCTCCTAAGAACGACGAGACCATCGGG
AGTGTCGGCTATGAGTTACCGCACGGATTTGTGCCCGGCGTGGAGGCAGA
GGTCAAGATTGACATTTCCCAATCCCATGAACATGTTTGACACCACACGT
GCCCCAAGCTCTCCTCCACCTCCTCCGGCTCCTCCCTCCGCCCTCCGAAA
CCCCCTCCGCGCGAAGTCATCAACCGTTACGGGGGGGTATGCCGGGCAGC
ACTTCCGACCGAACGAAGCGGAAACTGGCCCACGTTGGCTCCGCCGAGTC
AATCATGCTCCAGAATGCCTTGATGTGGAAGGGAGCCCGTCTTACCAGAA
GCAGATGCTTCCTCCTCCTCCGCCTCCTTTTCCTCTCCCCCTCCTTTGTG
TCACCTGTCAAGTCGTTGCAGGAGCGTGTGCAGCAGGAGCAGCAGGAGCA
GCAGGAGCAGCAGGAGCAGCAGGAGTATGAAGGACACAAAATGACCCATC
TCCAGAAAGTCTCCAATCACAGCAAGAGCTTGAGCCCACGACCCTCCCGT
CCTTGGACGTCCATAATTGCTTGACATGTGCAGAAAGACAGATGAAGAGG
AGACTAGGCCTCCTGGGCGCCTTTCTGGTGGGTGCGGCGTGCAGGGCAAC
GCATGCGCAGGTTACGCATCCGCCTACCCCTCCCACCGCGGCAACACCGG
CGGGAAAAGCCCTCCTACCTCTCTGTCTCCCCCTCCCTCGACCCCTCCTA
AGAACGACGAGACCATCGGGAGTGTCGGCTATGAGTTACCGCACGGATTT
GTGCCCGGCGTGGAGGCAGAGGTCAAGATTGACATTTCCCAATCCCATGA
ACATGTTTGACACCACACGTGCCCCAAGCTCTCCTCCACCTCCTCCGGCT
CCTCCCTCCGCCCTCCGAAACCCCCTCCGCGCGAAGTCATCAACCGTTAC
GGGGGGGTATGCCGGGCAGCACTTCCGACCGAACGAAGCGGAAACTGGCC
CACGTTGGCTCCGCCGAGTCAATCATGCTCCAGAATGCCTTGATGTGGAA
GGGAGCCCGTCTTACCAGAAGCAGATGCTTCCTCCTCCTCCGCCTCCTTT
TCCTCTCCCCCTCCTTTGTGTCACCTGTCAAGTCGTTGCAGGAGCGTGTG
CAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGTATGA
AGGACACAAAATGACCCATCTCCAGAAAGTCTCCAATCACAGCAAGAGCT
TGAGCCCACGACCCTCCCGTCCTTGGACGTCCATAATTGCTTGACATGTG
CAGAAAGACAGATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGGTG
GGTGCGGCGTGCAGGGCAACGCATGCGCAGGTTACGCATCCGCCTACCCC
TCCCACCGCGGCAACACCGGCGGGAAAAGCCCTCCTACCTCTCTGTCTCC
CCCTCCCTCGACCCCTCCTAAGAACGACGAGACCATCGGGAGTGTCGGCT
ATGAGTTACCGCACGGATTTGTGCCCGGCGTGGAGGCAGAGGTCAAGATT
GACATTTCCCAATCCCATGAACATGTTTGACACCACACGTGCCCCAAGCT
CTCCTCCACCTCCTCCGGCTCCTCCCTCCGCCCTCCGAAACCCCCTCCGC
GCGAAGTCATCAACCGTTACGGGGGGGTATGCCGGGCAGCACTTCCGACC
GAACGAAGCGGAAACTGGCCCACGTTGGCTCCGCCGAGTCAATCATGCTC
CAGAATGCCTTGATGTGGAAGGGAGCCCGTCTTACCAGAAGCAGATGCTT
CCTCCTCCTCCGCCTCCTTTTCCTCTCCCCCTCCTTTGTGTCACCTGTCA
AGTCGTTGCAGGAGCGTGTGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAG
CAGGAGCAGCAGGAGTATGAAGGACACAAAATGACCCATCTCCAGAAAGT
CTCCAATCACAGCAAGAGCTTGAGCCCACGACCCTCCCGTCCTTGGACGT
CCATAATTGCTTGACATGTGCAGAAAGACAGATGAAGAGGAGACTAGGCC
TCCTGGGCGCCTTTCTGGTGGGTGCGGCGTGCAGGGCAACGCATGCGCAG
GTTACGCATCCGCCTACCCCTCCCACCGCGGCAACACCGGCGGGAAAAGC
CCTCCTACCTCTCTGTCTCCCCCTCCCTCGACCCCTCCTAAGAACGACGA
GACCATCGGGAGTGTCGGCTATGAGTTACCGCACGGATTTGTGCCCGGCG
TGGAGGCAGAGGTCAAGATTGACATTTCCCAATCCCATGAACATGTTTGA
CACCACACGTGCCCCAAGCTCTCCTCCACCTCCTCCGGCTCCTCCCTCCG
CCCTCCGAAACCCCCTCCGCGCGAAGTCATCAACCGTTACGGGGGGGTAT
GCCGGGCAGCACTTCCGACCGAACGAAGCGGAAACTGGCCCACGTTGGCT
CCGCCGAGTCAATCATGCTCCAGAATGCCTTGATGTGGAAGGGAGCCCGT
CTTACCAGAAGCAGATGCTTCCTCCTCCTCCGCCTCCTTTTCCTCTCCCC
CTCCTTTGTGTCACCTGTCAAGTCGTTGCAGGAGCGTGTGCAGCAGGAGC
AGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGTATGAAGGACACAAA
ATGACCCATCTCCAGAAAGTCTCCAATCACAGCAAGAGCTTGAGCCCACG
ACCCTCCCGTCCTTGGACGTCCATAATTGCTTGACATGTGCAGAAAGACA
GATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGGTGGGTGCGGCGT
GCAGGGCAACGCATGCGCAGGTTACGCATCCGCCTACCCCTCCCACCGCG
GCAACACCGGCGGGAAAAGCCCTCCTACCTCTCTGTCTCCCCCTCCCTCG
ACCCCTCCTAAGAACGACGAGACCATCGGGAGTGTCGGCTATGAGTTACC
GCACGGATTTGTGCCCGGCGTGGAGGCAGAGGTCAAGATTGACATTTCCC
AATCCCATGAACATGTTTGACACCACACGTGCCCCAAGCTCTCCTCCACC
TCCTCCGGCTCCTCCCTCCGCCCTCCGAAACCCCCTCCGCGCGAAGTCAT
CAACCGTTACGGGGGGGTATGCCGGGCAGCACTTCCGACCGAACGAAGCG
GAAACTGGCCCACGTTGGCTCCGCCGAGTCAATCATGCTCCAGAATGCCT
TGATGTGGAAGGGAGCCCGTCTTACCAGAAGCAGATGCTTCCTCCTCCTC
CGCCTCCTTTTCCTCTCCCCCTCCTTTGTGTCACCTGTCAAGTCGTTGCA
GGAGCGTGTGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGC
AGGAGTATGAAGGACACAAAATGACCCATCTCCAGAAAGTCTCCAATCAC
AGCAAGAGCTTGAGCCCACGACCCTCCCGTCCTTGGACGTCCATAATTGC
TTGACATGTGCAGAAAGACAGATGAAGAGGAGACTAGGCCTCCTGGGCGC
CTTTCTGGTGGGTGCGGCGTGCAGGGCAACGCATGCGCAG back to top
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