jgi.p|Nanoce1779_2|570690, mRNA_12036 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|570690
Unique NamemRNA_12036
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length435
Alignment locationscaffold_137:1963..2469 -

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Properties
Property NameValue
TranscriptId570776
TrackFilteredModels2
ProteinId570690
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:1963..2469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570690gene_12036Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570690mRNA_12036-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12036CDS_12036Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12036 ID=mRNA_12036|Name=jgi.p|Nanoce1779_2|570690|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
ATGCCAATAATGAGACAAAGAGAACTTGGCCTTGTGGTGGCTGCGCTTGG
CAGTGCCGCCTGGACTGGCACGGCGCAAGTCTCCATGCCCTTAGCCTACA
AAGCAAAACCAATCGCAACAGCAGCACTTGCGCAGTCGTCGTCCACCCCT
GTGCCAGAACGTGGCTTCTTAAATTTCCTGACCATTGGTGCTGAGGAAGG
GGCAACCGGGACGGAGGGTCTTCATATGATTGTGGAGAAAGAGCTCGACT
ACGTGGCATATGTGGATCCGTCCACAAACCGCGTCAAGGCTGCCGCTGCT
TCGATCGAGAGACTGGAGGCTCTTAATCCTCAGATTTGGGCTTACTTTGC
GTCGTTGGAGTTCGAGGGGAACCAGGTGGGGGGGTGGGAGGGAGGAAGGG
ACAGAGAGAGCGGGAGGGTGTCTCAGAGAGGTTGA
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protein sequence of jgi.p|Nanoce1779_2|570690

>mRNA_12036-protein ID=mRNA_12036-protein|Name=jgi.p|Nanoce1779_2|570690|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MPIMRQRELGLVVAALGSAAWTGTAQVSMPLAYKAKPIATAALAQSSSTP
VPERGFLNFLTIGAEEGATGTEGLHMIVEKELDYVAYVDPSTNRVKAAAA
SIERLEALNPQIWAYFASLEFEGNQVGGWEGGRDRESGRVSQRG*
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mRNA from alignment at scaffold_137:1963..2469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12036 ID=mRNA_12036|Name=jgi.p|Nanoce1779_2|570690|organism=Nannochloropsis oceanica|type=mRNA|length=507bp|location=Sequence derived from alignment at scaffold_137:1963..2469- (Nannochloropsis oceanica)
ATGCCAATAATGAGACAAAGAGAACTTGGCCTTGTGGTGGCTGCGCTTGG
CAGTGCCGCCTGGACTGGCACGGCGCAAGTCTCCATGCCCTTAGCCTACA
AAGCAAAACCAATCGCAACAGCAGCACTTGCGCAGTCGTCGTCCACCCCT
GTGCCAGAACGTGGCTTCTTAAATTTCCTGACCATTGGTGCTGAGGAAGG
GGCAACCGGGACGGAGGGTCTTCATATGATTGTGGAGAAAGAGGTGGGTA
TCTTATGAGGGGAGGCAGTGGGTATGTTCCCTCTAGACTTATCCTTACCC
TCCCTCCCTCCCTAGCTCGACTACGTGGCATATGTGGATCCGTCCACAAA
CCGCGTCAAGGCTGCCGCTGCTTCGATCGAGAGACTGGAGGCTCTTAATC
CTCAGATTTGGGCTTACTTTGCGTCGTTGGAGTTCGAGGGGAACCAGGTG
GGGGGGTGGGAGGGAGGAAGGGACAGAGAGAGCGGGAGGGTGTCTCAGAG
AGGTTGA
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Coding sequence (CDS) from alignment at scaffold_137:1963..2469-

>mRNA_12036 ID=mRNA_12036|Name=jgi.p|Nanoce1779_2|570690|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_137:1963..2469- (Nannochloropsis oceanica)
CTCGACTACGTGGCATATGTGGATCCGTCCACAAACCGCGTCAAGGCTGC
CGCTGCTTCGATCGAGAGACTGGAGGCTCTTAATCCTCAGATTTGGGCTT
ACTTTGCGTCGTTGGAGTTCGAGGGGAACCAGGTGGGGGGGTGGGAGGGA
GGAAGGGACAGAGAGAGCGGGAGGGTGTCTCAGAGAGGTTGAATGCCAAT
AATGAGACAAAGAGAACTTGGCCTTGTGGTGGCTGCGCTTGGCAGTGCCG
CCTGGACTGGCACGGCGCAAGTCTCCATGCCCTTAGCCTACAAAGCAAAA
CCAATCGCAACAGCAGCACTTGCGCAGTCGTCGTCCACCCCTGTGCCAGA
ACGTGGCTTCTTAAATTTCCTGACCATTGGTGCTGAGGAAGGGGCAACCG
GGACGGAGGGTCTTCATATGATTGTGGAGAAAGAGCTCGACTACGTGGCA
TATGTGGATCCGTCCACAAACCGCGTCAAGGCTGCCGCTGCTTCGATCGA
GAGACTGGAGGCTCTTAATCCTCAGATTTGGGCTTACTTTGCGTCGTTGG
AGTTCGAGGGGAACCAGGTGGGGGGGTGGGAGGGAGGAAGGGACAGAGAG
AGCGGGAGGGTGTCTCAGAGAGGTTGAATGCCAATAATGAGACAAAGAGA
ACTTGGCCTTGTGGTGGCTGCGCTTGGCAGTGCCGCCTGGACTGGCACGG
CGCAAGTCTCCATGCCCTTAGCCTACAAAGCAAAACCAATCGCAACAGCA
GCACTTGCGCAGTCGTCGTCCACCCCTGTGCCAGAACGTGGCTTCTTAAA
TTTCCTGACCATTGGTGCTGAGGAAGGGGCAACCGGGACGGAGGGTCTTC
ATATGATTGTGGAGAAAGAG
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Synonyms
Publications