jgi.p|Nanoce1779_2|73985, mRNA_12044 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|73985
Unique Name	mRNA_12044
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1040
Alignment location	scaffold_137:27570..29307 +

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Properties


Property Name	Value
TranscriptId	74071
Track	FilteredModels2
ProteinId	73985

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_137	supercontig	scaffold_137:27570..29307 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|73985	gene_12044	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|73985	mRNA_12044-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12044	CDS_12044	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_137:27570..29307+
coding sequence from alignment at scaffold_137:27570..29307+

mRNA sequence

>mRNA_12044 ID=mRNA_12044|Name=jgi.p|Nanoce1779_2|73985|organism=Nannochloropsis oceanica|type=mRNA|length=1040bp
CTGTCTCTGGACTGACCCCCCAGCCTTGCTCATCGCACCAGTGCGACATC
CCGGCCCCTGCCTGTGCTTGCAGGTTGTGTAGCATATAGTACGTTGGCTA
CGTTCTGTATGACTACCATACCATGTTAGATTAGAGGCGCAGTCATGAGC
AGGCACTGCTACTAGCAACTGCTCGAGGTGCTCGAATACGCTCGCTGTGG
AAGTTCAGAGCTGGCGAAGCAAGCAAGCGTGCTTCCTCAATTTTCGACAC
CCCAAAACCTACACCTCTCTCTTCGAACATACCCCATACATACAGGCACA
TTTAAAGTACCAGGAAAGGATGCATCCCGGCGTGGCTCCTCCGAGGAGGC
TGCACCAGGACGCACAGGCCCTCCGCGACTACCTCGTGGCAGGTGACGCC
GTGCGGTATGATTTGCTCCCTAAGGGCGTGGTGATGGTGAGTGTCACGCA
TTCCAACCTTGGCATGTCCATGCCCGACATTCGCCTCGATCTGCACACGT
CGATCGATGGTGTCAAGGAAAAGCTCTACACCCACTGCGGGACCAAGCCT
CAACATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCGACAGCACCATGCT
CCCCCTCAGCGATGACTCCAAAAAATTGGGGTATTACTCCGTAGAAAGCG
GCATGTGCATCCACGTCGTCGATGACGACCCATATTCCCTCTCCAAGCAC
GGTGGACTGGAAGACGTTAGCAAGGTGGAGAAATACACCATGTCGGAGGA
AGACTACGACAAACGCAAGGGCACCCTCAGGGAATGGGTGAAGGAGCAGA
AAGCCAAGGACGAGAAGTGGAAGGTAGACCCTCCCCTCCCTCCCTCCCTC
CCTCCCTCCTGCCCTCCCTCTCTTGCTCCCTCACTCCTGCCCTCCCCCTC
TTGCGCCCTCCCTCCGTTCCCTCCTTTTCCCTGAGGGGGGCTCTGTGCCT
CCATACCGTAATTGGCCTCCATACCGTAATTCCCCTTTCTTCCCTCCCTT
CCCCCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|73985

>mRNA_12044-protein ID=mRNA_12044-protein|Name=jgi.p|Nanoce1779_2|73985|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MHPGVAPPRRLHQDAQALRDYLVAGDAVRYDLLPKGVVMVSVTHSNLGMS
MPDIRLDLHTSIDGVKEKLYTHCGTKPQHQRLFLKRDSGDSTMLPLSDDS
KKLGYYSVESGMCIHVVDDDPYSLSKHGGLEDVSKVEKYTMSEEDYDKRK
GTLREWVKEQKAKDEKWKVDPPLPPSLPPSCPPSLAPSLLPSPSCALPPF
PPFP*

mRNA from alignment at scaffold_137:27570..29307+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12044 ID=mRNA_12044|Name=jgi.p|Nanoce1779_2|73985|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at scaffold_137:27570..29307+ (Nannochloropsis oceanica)
CTGTCTCTGGACTGACCCCCCAGCCTTGCTCATCGCACCAGTGCGACATC
CCGGCCCCTGCCTGTGCTTGCAGGTTGTGTAGCATATAGTACGTTGGCTA
CGTTCTGTATGACTACCATACCATGTTAGATTAGAGGCGCAGTCATGAGC
AGGCACTGCTACTAGCAACTGCTCGAGGTGCTCGAATACGCTCGCTGTGG
AAGTTCAGAGCTGGCGAAGCAAGCAAGCGTGCTTCCTCAATTTTCGACAC
CCCAAAACCTACACCTCTCTCTTCGAACATACCCCATACATACAGGCACA
TTTAAAGTACCAGGAAAGGATGCATCCCGGCGTGGCTCCTCCGAGGAGGC
TGCACCAGGACGCACAGGTAGGCGAAACGTCTAATGACCATGCAGTGCTG
AAAAAGATGGAGGGCAGGGCATTTGTCGCGTATGGTGGTCGAGCGAAAGA
GAAGGAGTAAGATTATTGGGAGCATGTAAAAACAAGCACGTTATCGTGGG
CATGCATCCTGCCCCGTTGCCTTTAGAGCCCTTTTCTCGTTCTCAACCCT
TCCTTCTTCTTATTTATTTTATCCTTTTCCTCCCTTCCCTATCAAGGCCC
TCCGCGACTACCTCGTGGCAGGTGACGCCGTGCGGTATGATTTGCTCCCT
AAGGGCGTGGTGATGGTGAGTGTCACGCATTCCAACCTTGGCATGTCCAT
GCCCGACATTCGCCTCGATCTGCACACGTCGGTACGTCCCTCCTTCCCTC
CTCCCTTCCTTCCCTCCCTTTCTCCCTGCATCTCATTACCTCTCCGCATT
CCCCCCTCTAGATCGATGGTGTCAAGGAAAAGCTCTACACCCACTGCGGG
ACCAAGCCTCAACATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCGACAG
CACCATGCTCCCCCTCAGTACGTATCCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTTTCCACTTCCTTTCC
TCCTCCCTTCCCCCACTTCATCTCATCTCTTCATCATATTATCTCTTCTT
ACAGGCGATGACTCCAAAAAATTGGGGTATTACTCCGTAGAAAGCGGCAT
GTGCATCCACGTCGTCGATGACGTACGTCCCTCGTTCCCTCCCTCCCTCC
CTCCCTCCCTTGCTCCCTCCCTCCCTCCTTTTTTGTTCACCCTCTCCCTC
CTTCCCTCCCTCCCTCCTTTTATTGATAAACAGGACCCATATTCCCTCTC
CAAGCACGGTGGACTGGAAGACGTTAGCAAGGCACGTGGAAAGCCTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTCGCATCTCATCGCGTCA
ATCTCCCTCCCCACCTCTTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCCTCCCTCAGGTGGAGAAATACACCATGTCGGAGGAAG
ACTACGACAAACGCAAGGGCACCCTCAGGGAATGGGTGAAGGAGCAGAAA
GCCAAGGACGAGAAGTGGAAGGTAGACCCTCCCCTCCCTCCCTCCCTCCC
TCCCTCCTGCCCTCCCTCTCTTGCTCCCTCACTCCTGCCCTCCCCCTCTT
GCGCCCTCCCTCCGTTCCCTCCTTTTCCCTGAGGGGGGCTCTGTGCCTCC
ATACCGTAATTGGCCTCCATACCGTAATTCCCCTTTCTTCCCTCCCTTCC
CCCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC

Coding sequence (CDS) from alignment at scaffold_137:27570..29307+

>mRNA_12044 ID=mRNA_12044|Name=jgi.p|Nanoce1779_2|73985|organism=Nannochloropsis oceanica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_137:27570..29307+ (Nannochloropsis oceanica)
ATGCATCCCGGCGTGGCTCCTCCGAGGAGGCTGCACCAGGACGCACAGGC
CCTCCGCGACTACCTCGTGGCAGGTGACGCCGTGCGGTATGATTTGCTCC
CTAAGGGCGTGGTGATGGTGAGTGTCACGCATTCCAACCTTGGCATGTCC
ATGCCCGACATTCGCCTCGATCTGCACACGTCGATCGATGGTGTCAAGGA
AAAGCTCTACACCCACTGCGGGACCAAGCCTCAACATCAGCGGCTCTTTC
TCAAGCGGGACTCGGGCGACAGCACCATGCTCCCCCTCAGCGATGACTCC
AAAAAATTGGGGTATTACTCCGTAGAAAGCGGCATGTGCATCCACGTCGT
CGATGACGACCCATATTCCCTCTCCAAGCACGGTGGACTGGAAGACGTTA
GCAAGGTGGAGAAATACACCATGTCGGAGGAAGACTACGACAAACGCAAG
GGCACCCTCAGGGAATGGGTGAAGGAGCAGAAAGCCAAGGACGAGAAGTG
GAAGGTAGACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCCTCCCT
CTCTTGCTCCCTCACTCCTGCCCTCCCCCTCTTGCGCCCTCCCTCCGTTC
CCTCCTTTTCCCTGAATGCATCCCGGCGTGGCTCCTCCGAGGAGGCTGCA
CCAGGACGCACAGGCCCTCCGCGACTACCTCGTGGCAGGTGACGCCGTGC
GGTATGATTTGCTCCCTAAGGGCGTGGTGATGGTGAGTGTCACGCATTCC
AACCTTGGCATGTCCATGCCCGACATTCGCCTCGATCTGCACACGTCGAT
CGATGGTGTCAAGGAAAAGCTCTACACCCACTGCGGGACCAAGCCTCAAC
ATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCGACAGCACCATGCTCCCC
CTCAGCGATGACTCCAAAAAATTGGGGTATTACTCCGTAGAAAGCGGCAT
GTGCATCCACGTCGTCGATGACGACCCATATTCCCTCTCCAAGCACGGTG
GACTGGAAGACGTTAGCAAGGTGGAGAAATACACCATGTCGGAGGAAGAC
TACGACAAACGCAAGGGCACCCTCAGGGAATGGGTGAAGGAGCAGAAAGC
CAAGGACGAGAAGTGGAAGGTAGACCCTCCCCTCCCTCCCTCCCTCCCTC
CCTCCTGCCCTCCCTCTCTTGCTCCCTCACTCCTGCCCTCCCCCTCTTGC
GCCCTCCCTCCGTTCCCTCCTTTTCCCTGAATGCATCCCGGCGTGGCTCC
TCCGAGGAGGCTGCACCAGGACGCACAGGCCCTCCGCGACTACCTCGTGG
CAGGTGACGCCGTGCGGTATGATTTGCTCCCTAAGGGCGTGGTGATGGTG
AGTGTCACGCATTCCAACCTTGGCATGTCCATGCCCGACATTCGCCTCGA
TCTGCACACGTCGATCGATGGTGTCAAGGAAAAGCTCTACACCCACTGCG
GGACCAAGCCTCAACATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCGAC
AGCACCATGCTCCCCCTCAGCGATGACTCCAAAAAATTGGGGTATTACTC
CGTAGAAAGCGGCATGTGCATCCACGTCGTCGATGACGACCCATATTCCC
TCTCCAAGCACGGTGGACTGGAAGACGTTAGCAAGGTGGAGAAATACACC
ATGTCGGAGGAAGACTACGACAAACGCAAGGGCACCCTCAGGGAATGGGT
GAAGGAGCAGAAAGCCAAGGACGAGAAGTGGAAGGTAGACCCTCCCCTCC
CTCCCTCCCTCCCTCCCTCCTGCCCTCCCTCTCTTGCTCCCTCACTCCTG
CCCTCCCCCTCTTGCGCCCTCCCTCCGTTCCCTCCTTTTCCCTGAATGCA
TCCCGGCGTGGCTCCTCCGAGGAGGCTGCACCAGGACGCACAGGCCCTCC
GCGACTACCTCGTGGCAGGTGACGCCGTGCGGTATGATTTGCTCCCTAAG
GGCGTGGTGATGGTGAGTGTCACGCATTCCAACCTTGGCATGTCCATGCC
CGACATTCGCCTCGATCTGCACACGTCGATCGATGGTGTCAAGGAAAAGC
TCTACACCCACTGCGGGACCAAGCCTCAACATCAGCGGCTCTTTCTCAAG
CGGGACTCGGGCGACAGCACCATGCTCCCCCTCAGCGATGACTCCAAAAA
ATTGGGGTATTACTCCGTAGAAAGCGGCATGTGCATCCACGTCGTCGATG
ACGACCCATATTCCCTCTCCAAGCACGGTGGACTGGAAGACGTTAGCAAG
GTGGAGAAATACACCATGTCGGAGGAAGACTACGACAAACGCAAGGGCAC
CCTCAGGGAATGGGTGAAGGAGCAGAAAGCCAAGGACGAGAAGTGGAAGG
TAGACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCTGCCCTCCCTCTCTT
GCTCCCTCACTCCTGCCCTCCCCCTCTTGCGCCCTCCCTCCGTTCCCTCC
TTTTCCCTGAATGCATCCCGGCGTGGCTCCTCCGAGGAGGCTGCACCAGG
ACGCACAGGCCCTCCGCGACTACCTCGTGGCAGGTGACGCCGTGCGGTAT
GATTTGCTCCCTAAGGGCGTGGTGATGGTGAGTGTCACGCATTCCAACCT
TGGCATGTCCATGCCCGACATTCGCCTCGATCTGCACACGTCGATCGATG
GTGTCAAGGAAAAGCTCTACACCCACTGCGGGACCAAGCCTCAACATCAG
CGGCTCTTTCTCAAGCGGGACTCGGGCGACAGCACCATGCTCCCCCTCAG
CGATGACTCCAAAAAATTGGGGTATTACTCCGTAGAAAGCGGCATGTGCA
TCCACGTCGTCGATGACGACCCATATTCCCTCTCCAAGCACGGTGGACTG
GAAGACGTTAGCAAGGTGGAGAAATACACCATGTCGGAGGAAGACTACGA
CAAACGCAAGGGCACCCTCAGGGAATGGGTGAAGGAGCAGAAAGCCAAGG
ACGAGAAGTGGAAGGTAGACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCC
TGCCCTCCCTCTCTTGCTCCCTCACTCCTGCCCTCCCCCTCTTGCGCCCT
CCCTCCGTTCCCTCCTTTTCCCTGAATGCATCCCGGCGTGGCTCCTCCGA
GGAGGCTGCACCAGGACGCACAGGCCCTCCGCGACTACCTCGTGGCAGGT
GACGCCGTGCGGTATGATTTGCTCCCTAAGGGCGTGGTGATGGTGAGTGT
CACGCATTCCAACCTTGGCATGTCCATGCCCGACATTCGCCTCGATCTGC
ACACGTCGATCGATGGTGTCAAGGAAAAGCTCTACACCCACTGCGGGACC
AAGCCTCAACATCAGCGGCTCTTTCTCAAGCGGGACTCGGGCGACAGCAC
CATGCTCCCCCTCAGCGATGACTCCAAAAAATTGGGGTATTACTCCGTAG
AAAGCGGCATGTGCATCCACGTCGTCGATGACGACCCATATTCCCTCTCC
AAGCACGGTGGACTGGAAGACGTTAGCAAGGTGGAGAAATACACCATGTC
GGAGGAAGACTACGACAAACGCAAGGGCACCCTCAGGGAATGGGTGAAGG
AGCAGAAAGCCAAGGACGAGAAGTGGAAGGTAGACCCTCCCCTCCCTCCC
TCCCTCCCTCCCTCCTGCCCTCCCTCTCTTGCTCCCTCACTCCTGCCCTC
CCCCTCTTGCGCCCTCCCTCCGTTCCCTCCTTTTCCCTGA

Synonyms

Publications