jgi.p|Nanoce1779_2|73954, mRNA_12041 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|73954
Unique NamemRNA_12041
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1073
Alignment locationscaffold_137:16036..17807 +

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Properties
Property NameValue
TranscriptId74040
TrackFilteredModels2
ProteinId73954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:16036..17807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|73954gene_12041Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|73954mRNA_12041-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12041CDS_12041Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12041 ID=mRNA_12041|Name=jgi.p|Nanoce1779_2|73954|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
GTGGCTGTAGGATGATTTTCGGCAACGGCTACAAAAGCCAATGTCCTCGG
AGCCTTTTTTTGTGCCTTTCCTTCCTGTGGGTGTGTGCGCCTGGGGTCAG
GTGCGCGTCGTACTACAAGGAAAACTTGTGTCTTGCACCTTGTCACGTAA
CAATCAGTCGACGCAGCAGTAGCAGCATCGCCAGCCCTGTCCGAGAGAAA
GTTCCTTGGATAAGTTGAAATGCTCATGGCCAACAACAACAAGCATTTCC
CAGTCCCAACTACACACGACCCCACGCACACAGTGACTGAGGACGAGCAC
CTAAGTCAGGTGGAGAAGACATAATCACAAGTGCAGATTTTGCCAGTCTG
GCTTCTGAAGCCAGGGGGACACGGAGGGAAGAAAAAGTCATAATGCCGCG
ATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCCTTCCTCG
ACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGCGACGAAA
CCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACTCGGCCAG
GGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCTCTCGGCCC
CCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGAACCAAC
ATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCAGACGGC
CTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATCGCCGGACC
CAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATGTCGAGTCT
TTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTGGTTCGT
CGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAGAATCGCG
TCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAGGAGGGAGG
GAGGGGAGGAAGGAAGGAAGGAAGGTAGAAAGGAGAAAGGGACGAGGGAG
GGATGGAGGGAGGGATGGAGAAAGGGAGGAGAAGAGGGAAGGAGTCTGGG
ACCAGGACTCAGACATATCCATG
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protein sequence of jgi.p|Nanoce1779_2|73954

>mRNA_12041-protein ID=mRNA_12041-protein|Name=jgi.p|Nanoce1779_2|73954|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPRSSSLLLVVSLLLHSFLDPVQTQARAQARVEATKPTRADASTMDFLRD
SAREVMHCPGAFLGCILSAPCRATMACAAHCVTGTNMNLTCFLPCTQGND
QTAFTTFTNCVMKERASPDPGVDDVPNGGKCLDVESFVVPDWRISSLEGE
WFVVAGASTLEGYDCQKNRVSVHNSTHWRIDE*
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mRNA from alignment at scaffold_137:16036..17807+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12041 ID=mRNA_12041|Name=jgi.p|Nanoce1779_2|73954|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_137:16036..17807+ (Nannochloropsis oceanica)
GTGGCTGTAGGATGATTTTCGGCAACGGCTACAAAAGCCAATGTCCTCGG
AGCCTTTTTTTGTGCCTTTCCTTCCTGTGGGTGTGTGCGCCTGGGGTCAG
GTGCGCGTCGTACTACAAGGAAAACTTGTGTCTTGCACCTTGTCACGTAA
CAATCAGTCGACGCAGCAGTAGCAGCATCGCCAGCCCTGTCCGAGAGAAA
GTTCCTTGGATAAGTTGAAATGCTCATGGCCAACAACAACAAGCATTTCC
CAGTCCCAACTACACACGACCCCACGCACACAGTGACTGAGGACGAGCAC
CTAAGTCAGGTGGAGAAGACATAATCACAAGTGCAGATTTTGCCAGTCTG
GCTTCTGAAGCCAGGGGGACACGGAGGGAAGAAAAAGTCATAATGCCGCG
ATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCCTTCCTCG
ACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGCGACGAAA
CCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACTCGGCCAG
GGAGGTGATGCATTGCCCAGGTGAGAAGGGAGGGAGAGAGGGAGGGAGGG
AGGGAAGAAGGGCAGGCAAGAATGGACGCACGGTTTGAAAGGACCTCTTA
GGATATATAGATCAGGCATGAAGAAACAGCCATCAAGATGTAGTGCTACA
TGGCCTTGTCAACATGTCTCTCGTCCAGCACAATTTCATCTTTCGACCTC
CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTCAGGTGCCTTCCTTG
GATGTATCCTCTCGGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCAT
TGCGTGACGGGAACCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCA
GGGGAACGACCAGACGGTACGCTGCCCTCTCCCCTCCCTCCCTCCTTCTA
TCCCTGCGTCCCACCCCTCTATCTCACCGATGTAAACGTGTACATATACA
TGCACATATGTACTTACATACGCCTATCCACGCTTTAGGCCTTTACTACT
TTTACGAACTGTGTCATGAAGGAGAGGGCATCGCCGGACCCAGGGGTGGA
TGACGTGCCCAACGGGGGGAAATGCCTGGATGTCGAGGTGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGCTCGCTCACACACCCTCTCTGCTC
CCATACTTTTTTTTAATTGTTCCTCCCCCTACCCCCTTTCTACCCCCCTC
CTCCCTCTTCCTCCCCCTCCTCCTCCTCCTCCGCCTCCTCCTGCTCCTGC
TCTTCCTCCCCCTCCTCCTTCTTCTTCTCCCCCTATTTCTCCTCCTTCCT
AATCAAAATACTTATCAAGTCTTTCGTTGTTCCGGATTGGCGGATATCCT
CCCTAGAAGGAGAGTGGTTCGTCGTGGCGGTACGTCCTCCTCCCTCCCTC
CCTCCTTCCCTCCCTCCCTCCCCTCTCTCCTCCAGGGTACCTCCACCCAC
GAAATTTGACACGTGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CTTCAGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAGAATCGCGT
CTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAGGAGGGAGGG
AGGGGAGGAAGGAAGGAAGGAAGGTAGAAAGGAGAAAGGGACGAGGGAGG
GATGGAGGGAGGGATGGAGAAAGGGAGGAGAAGAGGGAAGGAGTCTGGGA
CCAGGACTCAGACATATCCATG
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Coding sequence (CDS) from alignment at scaffold_137:16036..17807+

>mRNA_12041 ID=mRNA_12041|Name=jgi.p|Nanoce1779_2|73954|organism=Nannochloropsis oceanica|type=CDS|length=2745bp|location=Sequence derived from alignment at scaffold_137:16036..17807+ (Nannochloropsis oceanica)
ATGCCGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTC
CTTCCTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAG
CGACGAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGAC
TCGGCCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCT
CTCGGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGG
GAACCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGAC
CAGACGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATC
GCCGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATG
TCGAGTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAG
TGGTTCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAA
GAATCGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAA
TGCCGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCC
TTCCTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGC
GACGAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACT
CGGCCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCTC
TCGGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGGG
AACCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGACC
AGACGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATCG
CCGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATGT
CGAGTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGT
GGTTCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAG
AATCGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAAT
GCCGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCCT
TCCTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGCG
ACGAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACTC
GGCCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCTCT
CGGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGA
ACCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCA
GACGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATCGC
CGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATGTC
GAGTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTG
GTTCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAGA
ATCGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAATG
CCGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCCTT
CCTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGCGA
CGAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACTCG
GCCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCTCTC
GGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGAA
CCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCAG
ACGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATCGCC
GGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATGTCG
AGTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTGG
TTCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAGAA
TCGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAAATGC
CGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTCCTTC
CTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAGCGAC
GAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGACTCGG
CCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCTCTCG
GCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGAAC
CAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCAGA
CGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATCGCCG
GACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATGTCGA
GTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTGGT
TCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAAGAAT
CGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTAA
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Synonyms
Publications