jgi.p|Nanoce1779_2|617402, mRNA_12039 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|617402
Unique NamemRNA_12039
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1778
Alignment locationscaffold_137:9859..12103 -

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Properties
Property NameValue
TranscriptId617488
TrackFilteredModels2
ProteinId617402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:9859..12103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617402gene_12039Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617402mRNA_12039-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12039CDS_12039Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12039 ID=mRNA_12039|Name=jgi.p|Nanoce1779_2|617402|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
TACATATCATTATTAATCTTCTTTCGAATATATCTCTCTCGCTTTGATGT
TAACGTCAACATCAGCATCAGTATGGTATCAATACTGTCATCCGAGGGTA
CTTCGTACATGCCCTGATTCATGATCTTCAGATCCCATTCTGCATTCTGA
GGCCCTGGGTGAAAGCCTCTTCTCTCCTTTTAGTCTCCTCTCCCTCTCTT
TCCTTTCCTCCCGTCTATTCTTTGCTTTCTTATTTTCTCTTTTCCTCTCT
CTCCCCCCCCCCCCCTGTCTTTCTTTCCCCGGCCTTCTTCTCTTTCCCTC
CCTCTTCTCTTTCAGGTCCGTTTGAGACCCTCTCCCGCCAGTGCCGCTCG
CAGCAGCTGGTTTCTCTGCTCCATTCCTTGTAAGATGTCATCCGGGGATT
CTGCCTCAGTGCTCGGCTTGCAGAAGCCATAGAGCCTCAACACCCCTCCT
TCCTTCCCTCCCTCGCATTTTTTCTCCTGCCTTGAGGTGACGGAGGGGGA
GGAGCCAGAGGGTGTGATCTCTGCGCCGTAGATGCGTAGAGAGGAAGGAT
GGAGAGAGCGGCAGTCTTTGATGGTCAACGATACCGAAGACGCCCGCCCC
TCTTCCCTCTCTAGGTCTTTCTCCCTCATTTCTAGCCCAATGATCAGCTT
CTCTTCTTCTTGCAGTGGACGGGGGGAGGGCAAGAGGGAGGAAGGGCAAG
GTCAACGTGCACGGCGGCCTTGGCACGGATCAGGTCGGGGAGGGATTTTC
TAATGTGGGACAAGAGGATACTGAGAATAAGACATCGAAGCCACACCCCT
TTTTGCCTAATTTTCTTCCGTGCTCCTTCGCTCACACCATTAGTATTCGC
AGATAGTCTCCTCCTTCCCTCTCTTTCTTCCTTTCCTCCCTTCGTTCCCT
TACATCATCCTCGTAGGCATAAAACAGATGACAAGGCCGATCTCCACCAT
TTTGTCGATCCCAGCTCATGGAATCATGAAAGATTGCGGTCGAAGGGGCA
GAAAGAAAGGTAGCTGCTTGCACTTTGGGCGTGCCACTCCTCCGACTGCT
GGTGCTGCTGCTGTCGCTGCCGCTGCTGCATTCGTCGTGGTCATGGGGAT
CACGAAAGGAGTGGGAGCCAGCGTTGGATGCGCTCATCGACATATTAATA
TTACTTATGTTTACGCTAATGGTTTGTCTGGTGCTCGCGCTGTACATTGA
TGTGGTATGGATAGGGAGTGCTTGTCATGATGGCCCGGGCGAAGAACAAC
GGTGGCGTGGCTTCAAGCACAGCCTTCCTTACGCCCTGTCCTACCATCCT
CCTCGCATTATCAAATATACGTGTGTAAGAGGCATGAAGAGGTTCAAAAC
ACGCATGCATATGTTTTTCTTGATTTTGGCTCCCGTAATTCTAGCCAGAT
GGTGCTCGCTTCCTGTTTTTTGGGGGAGCCATCGCCGATGTCCAAGCGCG
TCCCTGGCCACCACCCTCCCTCTCTTTCCTCCCGTGCTCTCCCCCGCGGA
CGACCCCAGCCTGACAATGCCCTGAGTCTTTACTTGAATAGGCAGGCTTG
TGTAGGCCTGTGTTCTTATGTATGCGACCATAGGTTGTTCTCCCACACTT
TGGGTGTGCGTTTAGGGAAGCGAGACTGTGATTTATCACTACAATTGCAT
ATGACCATATCCGCACACACTTCACACATTTCTAAACGTCTCTTCCCTGT
AAATAGTAGAGAGATGAAGAGGAGACTAGGCCTCCTGGGCGCCTTTCTGG
TGGGTGCGGCGTGCAGGGCAACGCATGC
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protein sequence of jgi.p|Nanoce1779_2|617402

>mRNA_12039-protein ID=mRNA_12039-protein|Name=jgi.p|Nanoce1779_2|617402|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
ILLMFTLMVCLVLALYIDVVWIGSACHDGPGEEQRWRGFKHSLPYALSYH
PPRIIKYTCVRGMKRFKTRMHMFFLILAPVILARWCSLPVFWGSHRRCPS
ASLATTLPLFPPVLSPADDPSLTMP*
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mRNA from alignment at scaffold_137:9859..12103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12039 ID=mRNA_12039|Name=jgi.p|Nanoce1779_2|617402|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at scaffold_137:9859..12103- (Nannochloropsis oceanica)
TACATATCATTATTAATCTTCTTTCGAATATATCTCTCTCGCTTTGATGT
TAACGTCAACATCAGCATCAGTATGGTATCAATACTGTCATCCGAGGGTA
CTTCGTACATGCCCTGATTCATGATCTTCAGATCCCATTCTGCATTCTGA
GGCCCTGGGTGAAAGCCTCTTCTCTCCTTTTAGTCTCCTCTCCCTCTCTT
TCCTTTCCTCCCGTCTATTCTTTGCTTTCTTATTTTCTCTTTTCCTCTCT
CTCCCCCCCCCCCCCTGTCTTTCTTTCCCCGGCCTTCTTCTCTTTCCCTC
CCTCTTCTCTTTCAGGTCCGTTTGAGACCCTCTCCCGCCAGTGCCGCTCG
CAGCAGCTGGTTTCTGTTGTCCAGTAGGAGGGACAAAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGAATGTTGGTAGGA
AACAGAGAAAATGGGCCACCCGAATCGGAGACCAGCCCCAACACCCCCCC
CCCTCCCTCCTTCCTTACCTCTGCTCCATTCCTTGTAAGATGTCATCCGG
GGATTCTGCCTCAGTGCTGTAGAAAGGAGAGAAGGGGAGGTGGATGGAGG
AGGGGAGCAAAGAGGGAATGAAAAATGCCAGACTGAAATGAAATACAACC
ATATCGTCCCTCCATTCTTCCTGCCCCCCTCCCCTTCCTCCGTCCCTCCC
TACCCACCTCGGCTTGCAGAAGCCATAGAGCCTCAACACCCCTCCTTCCT
TCCCTCCCTCGCATTTTTTCTCCTGCCTTGAGGTGACGGAGGGGGAGGAG
CCAGAGGGTGTGATCTCTGCGCCGTAGATGCGTAGAGAGGAAGGATGGAG
AGAGCGGCAGTCTTTGATGGTCCTGAGGAGGAAGGACAACGGAGAAGAAG
AAAGGAAGGAAGGAAGGAGGGGGTTAAAGTGAGCGTGAGGATATTGGAAA
GGGAGGAAGGGAGGATGGAGAAGAAAAAGGAGAAAGGGAGGGGAGGAGGA
CGGAGAGGAAGGCTATTGATCTATGCATACAAAGGACACTTACAACGATA
CCGAAGACGCCCGCCCCTCTTCCCTCTCTAGGTCTTTCTCCCTCATTTCT
AGCCCAATGATCAGCTTCTCTTCTTCTTGCAGTGGACGGGGGGAGGGCAA
GAGGGAGGAAGGGCAAGGTCAACGTGCACGGCGGCCTTGGCACGGATCAG
GTCGGGGAGGGATTTTCTAATGTGGGACAAGAGGATACTGAGAATAAGAC
ATCGAAGCCACACCCCTTTTTGCCTAATTTTCTTCCGTGCTCCTTCGCTC
ACACCATTAGTATTCGCAGATAGTCTCCTCCTTCCCTCTCTTTCTTCCTT
TCCTCCCTTCGTTCCCTTACATCATCCTCGTAGGCATAAAACAGATGACA
AGGCCGATCTCCACCATTTTGTCGATCCCAGCTCATGGAATCATGAAAGA
TTGCGGTCGAAGGGGCAGAAAGAAAGGTAGCTGCTTGCACTTTGGGCGTG
CCACTCCTCCGACTGCTGGTGCTGCTGCTGTCGCTGCCGCTGCTGCATTC
GTCGTGGTCATGGGGATCACGAAAGGAGTGGGAGCCAGCGTTGGATGCGC
TCATCGACATATTAATATTACTTATGTTTACGCTAATGGTTTGTCTGGTG
CTCGCGCTGTACATTGATGTGGTATGGATAGGGAGTGCTTGTCATGATGG
CCCGGGCGAAGAACAACGGTGGCGTGGCTTCAAGCACAGCCTTCCTTACG
CCCTGTCCTACCATCCTCCTCGCATTATCAAATATACGTGTGTAAGAGGC
ATGAAGAGGTTCAAAACACGCATGCATATGTTTTTCTTGATTTTGGCTCC
CGTAATTCTAGCCAGATGGTGCTCGCTTCCTGTTTTTTGGGGGAGCCATC
GCCGATGTCCAAGCGCGTCCCTGGCCACCACCCTCCCTCTCTTTCCTCCC
GTGCTCTCCCCCGCGGACGACCCCAGCCTGACAATGCCCTGAGTCTTTAC
TTGAATAGGCAGGCTTGTGTAGGCCTGTGTTCTTATGTATGCGACCATAG
GTTGTTCTCCCACACTTTGGGTGTGCGTTTAGGGAAGCGAGACTGTGATT
TATCACTACAATTGCATATGACCATATCCGCACACACTTCACACATTTCT
AAACGTCTCTTCCCTGTAAATAGTAGAGAGATGAAGAGGAGACTAGGCCT
CCTGGGCGCCTTTCTGGTGGGTGCGGCGTGCAGGGCAACGCATGC
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Coding sequence (CDS) from alignment at scaffold_137:9859..12103-

>mRNA_12039 ID=mRNA_12039|Name=jgi.p|Nanoce1779_2|617402|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_137:9859..12103- (Nannochloropsis oceanica)
ATATTACTTATGTTTACGCTAATGGTTTGTCTGGTGCTCGCGCTGTACAT
TGATGTGGTATGGATAGGGAGTGCTTGTCATGATGGCCCGGGCGAAGAAC
AACGGTGGCGTGGCTTCAAGCACAGCCTTCCTTACGCCCTGTCCTACCAT
CCTCCTCGCATTATCAAATATACGTGTGTAAGAGGCATGAAGAGGTTCAA
AACACGCATGCATATGTTTTTCTTGATTTTGGCTCCCGTAATTCTAGCCA
GATGGTGCTCGCTTCCTGTTTTTTGGGGGAGCCATCGCCGATGTCCAAGC
GCGTCCCTGGCCACCACCCTCCCTCTCTTTCCTCCCGTGCTCTCCCCCGC
GGACGACCCCAGCCTGACAATGCCCTGA
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Synonyms
Publications