jgi.p|Nanoce1779_2|617415, mRNA_12042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|617415
Unique NamemRNA_12042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_137:22582..23137 +

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Properties
Property NameValue
TranscriptId617501
TrackFilteredModels2
ProteinId617415
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_137supercontigscaffold_137:22582..23137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617415gene_12042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617415mRNA_12042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12042CDS_12042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12042 ID=mRNA_12042|Name=jgi.p|Nanoce1779_2|617415|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAGGGAAGAAGCACATGCCAATGACATCGGAGGCGGCCCGTCGCG
TTCAGTCAGCAGAGGCCCGGGCAACTGGAGGGGGGGTGGAGAAGGGAGGC
TTTGCCGCTCGTGCGCAGTCAGCCGCGGCGATGCATGAAGGGGAGGAAGG
TGCGGGAGGAGGGTCAAGGGGAAAGTGAGATGAAGGATGACACCACGAGC
AAAAGGACGGGCAGGGGTGAAGACACACAAGGTGAGTAGAGTCATCCCCC
AATGTCGAAAGAAGTGGGATGTAGAAGGTGCAGCAGCAACAGTAGCAGAA
AAAATGAGAAGGAAATGTAATTCACGAGAGCAAAGCAAGAAGCCAAGGGT
TAAGTCCTCGTAGACATGCACACATATACATACACATACAAACCTTCACA
AGAAATATCACGTGAAAAAAGACCAAAGCATCAAGAGGAGACTTGGACAA
GATCACATAAAAAGAAGTGAAAGACATCAAAAGAAAGATGATATGGACAA
AGCAAG
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protein sequence of jgi.p|Nanoce1779_2|617415

>mRNA_12042-protein ID=mRNA_12042-protein|Name=jgi.p|Nanoce1779_2|617415|organism=Nannochloropsis oceanica|type=polypeptide|length=53bp
MPMTSEAARRVQSAEARATGGGVEKGGFAARAQSAAAMHEGEEGAGGGSR
GK*
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mRNA from alignment at scaffold_137:22582..23137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12042 ID=mRNA_12042|Name=jgi.p|Nanoce1779_2|617415|organism=Nannochloropsis oceanica|type=mRNA|length=556bp|location=Sequence derived from alignment at scaffold_137:22582..23137+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAGGGAAGAAGCACATGCCAATGACATCGGAGGCGGCCCGTCGCG
TTCAGTCAGCAGAGGCCCGGGCAACTGGAGGGGGGGTGGAGAAGGGAGGC
TTTGCCGCTCGTGCGCAGTCAGCCGCGGCGATGCATGAAGGGGAGGAAGG
TGCGGGAGGAGGGTCAAGGGGAAAGTGAGATGAAGGATGACACCACGAGC
AAAAGGACGGGCAGGGGTGAAGACACACAAGGTGAGTAGAGTCATCCCCC
AATGTCGAAAGAAGTGGGATGTAGAAGGTGCAGCAGCAACAGTAGCAGAA
AAAATGAGAAGGAAATGTAATTCACGAGAGCAAAGCAAGAAGCCAAGGGT
TAAGTCCTCGTAGACATGCACACATATACATACACATACAAACCTTCACA
AGAAATATCACGTGAAAAAAGACCAAAGCATCAAGAGGAGACTTGGACAA
GATCACATAAAAAGAAGTGAAAGACATCAAAAGAAAGATGATATGGACAA
AGCAAG
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Coding sequence (CDS) from alignment at scaffold_137:22582..23137+

>mRNA_12042 ID=mRNA_12042|Name=jgi.p|Nanoce1779_2|617415|organism=Nannochloropsis oceanica|type=CDS|length=159bp|location=Sequence derived from alignment at scaffold_137:22582..23137+ (Nannochloropsis oceanica)
ATGCCAATGACATCGGAGGCGGCCCGTCGCGTTCAGTCAGCAGAGGCCCG
GGCAACTGGAGGGGGGGTGGAGAAGGGAGGCTTTGCCGCTCGTGCGCAGT
CAGCCGCGGCGATGCATGAAGGGGAGGAAGGTGCGGGAGGAGGGTCAAGG
GGAAAGTGA
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Synonyms
Publications