NO18G00770, NO18G00770 (gene) Nannochloropsis oceanica

Overview
NameNO18G00770
Unique NameNO18G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3972
Alignment locationchr18:293763..297734 +

Link to JBrowse

Properties
Property NameValue
DescriptionPhotosystem II subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:293763..297734 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0019684photosynthesis, light reaction
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR037269PSII_PsbM_sf
IPR007826PSII_PsbM
Homology
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: XP_002184128.1 (photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC44306.1 photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.9 bits (185), Expect = 1.000e-10
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:   54 AGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR 123
            AG  P A L APAFA D I+ ALP+  V+LEV F AYLAV LGT +P  FLI L+IQ+ESRKAG A G+
Sbjct:   37 AGALPVAALAAPAFALDSIVEALPTNTVALEVQFGAYLAVALGTLLPCLFLINLFIQTESRKAGRAGGQ 105
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: AAO43193.1 (photosystem II reaction center M protein precursor [Phaeodactylum tricornutum])

HSP 1 Score: 74.7 bits (182), Expect = 2.300e-10
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:   54 AGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR 123
            AG  P A L APAFA D I+ ALP+  V+LEV + AYLAV LGT +P  FLI L+IQ+ESRKAG A G+
Sbjct:   37 AGALPVAALAAPAFALDSIVEALPTNTVALEVQYGAYLAVALGTLLPCLFLINLFIQTESRKAGRAGGQ 105
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: XP_002288939.1 (photosystem II reaction center M protein, plastid precursor [Thalassiosira pseudonana CCMP1335] >EED94375.1 photosystem II reaction center M protein, plastid precursor [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.6 bits (166), Expect = 1.600e-8
Identity = 56/112 (50.00%), Postives = 67/112 (59.82%), Query Frame = 0 
Query:   12 VVALMALSAS--AFIPAAKVVQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAG 122
            +V L A+ A+  AF P       A     R A +   +   A+ A   PAA  T PAFA D I+ ALP+  +SLEV F AYLAVLLGTF+PV FLI LYIQ+ESRKAG   G
Sbjct:    6 IVTLFAMIAATMAFAP-----NKAPQVAQRFAESGFDMKKAAIAA--IPAAIAT-PAFAMDSIVEALPTQTLSLEVQFGAYLAVLLGTFLPVLFLINLYIQTESRKAGRDGG 109
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: OEU12358.1 (photosystem II reaction center M protein precursor [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6 bits (161), Expect = 6.100e-8
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 0 
Query:   12 VVALMALSAS-AFIPAAKVVQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAG-EAAGRGD 125
            +++   ++AS AF P       +  T+ + AA S+            P A L APAFA D I+  LPS  VSL+V F AYLA+LLGTF+PV FL+ LY Q+E+RKAG E A  GD
Sbjct:    7 IISFALIAASMAFAPNQSPQCKSMATLVKGAAASI------------PVAALAAPAFAMDSIVETLPSIDVSLQVQFGAYLAILLGTFLPVLFLVNLYTQTETRKAGREDAENGD 109
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: EJK52241.1 (hypothetical protein THAOC_28510 [Thalassiosira oceanica])

HSP 1 Score: 65.9 bits (159), Expect = 1.000e-7
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 0 
Query:   12 VVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR 123
            +V L AL A +   A       A  V        K  + A+ A +A       PAFA D I+ ALP+  +SLEV F AYLAVLLGT +PV FL+ LY+Q+ESRKAG   G+
Sbjct:    6 LVTLFALVACSLAFAPNKAPQVAQRVVESGFDMKKAAIAAIPAAIA------TPAFAMDSIVEALPTQTLSLEVQFGAYLAVLLGTLLPVLFLVNLYVQTESRKAGRMGGQ 110
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: GAX25839.1 (hypothetical protein FisN_6Hh123 [Fistulifera solaris])

HSP 1 Score: 65.9 bits (159), Expect = 1.000e-7
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0 
Query:   12 VVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAG 122
            +  L AL ASA   A +V Q A      KAAT+             P A L+APAFA D I+  +P+  V+LEV F AY+AV LGT +P  FLI L+IQ+ESRKAG   G
Sbjct:    6 ITTLFALLASAMAFAPQVSQVA------KAATA-----------AVPVAALSAPAFALDSIVANMPTNTVALEVQFGAYMAVALGTLLPCLFLINLFIQTESRKAGRQGG 98
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: GAX09493.1 (hypothetical protein FisN_6Lh123 [Fistulifera solaris])

HSP 1 Score: 65.9 bits (159), Expect = 1.000e-7
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0 
Query:   12 VVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAG 122
            +  L AL ASA   A +V Q A      KAAT+             P A L+APAFA D I+  +P+  V+LEV F AY+AV LGT +P  FLI L+IQ+ESRKAG   G
Sbjct:    6 ITTLFALVASAMAFAPQVSQVA------KAATA-----------AVPVAALSAPAFALDSIVANMPTNTVALEVQFGAYMAVALGTLLPCLFLINLFIQTESRKAGRQGG 98
[Close]
BLAST of NO18G00770 vs. NCBI_GenBank
Match: OSX74689.1 (hypothetical protein BU14_0272s0007 [Porphyra umbilicalis])

HSP 1 Score: 63.9 bits (154), Expect = 4.000e-7
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 0 
Query:   22 AFIPAAKV--VQPAAVTVGRKAATSMKLDVPAVVAGLAPAAFLTAPAFAADQIMTALPSTLV---SLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGRG 124
            AF+P A V  ++P+  TV +++  + K    A VA  A  A +T  A         LPS+L+    + VTF AYLA+ LGT +PVAFLIILYIQ+ESRKAGE + RG
Sbjct:    3 AFVPVAGVAALRPSLATVSQRSFVAAK----APVAVRARRATMTPTASLEPLATVPLPSSLMLSEGMAVTFPAYLAIFLGTLIPVAFLIILYIQAESRKAGEDSVRG 105
The following BLAST results are available for this feature:
BLAST of NO18G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_002184128.11.000e-1062.32photosystem II subunit [Phaeodactylum tricornutum ... [more]
AAO43193.12.300e-1060.87photosystem II reaction center M protein precursor... [more]
XP_002288939.11.600e-850.00photosystem II reaction center M protein, plastid ... [more]
OEU12358.16.100e-845.22photosystem II reaction center M protein precursor... [more]
EJK52241.11.000e-744.14hypothetical protein THAOC_28510 [Thalassiosira oc... [more]
GAX25839.11.000e-746.36hypothetical protein FisN_6Hh123 [Fistulifera sola... [more]
GAX09493.11.000e-746.36hypothetical protein FisN_6Lh123 [Fistulifera sola... [more]
OSX74689.14.000e-746.73hypothetical protein BU14_0272s0007 [Porphyra umbi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR064ncniR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003928NSK003928Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G00770.1NO18G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G00770.2NO18G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609192gene_9570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G00770.1NO18G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G00770.2NO18G00770.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G00770 ID=NO18G00770|Name=NO18G00770|organism=Nannochloropsis oceanica|type=gene|length=3972bp
GAGGAGGAGGAGGAGGAGGAGGAGACAAGGGCATCAGCGTAACGAAGGAC
CGGAGCACAGTGTGGTTGGAGGGCGAGGGAGGACACAAAGGAGGAGGAGG
TGGATAAAGGGGTGGAAGAGAGGAGGAGGCCGGGAAGGAGGGAGAGGTCG
ATGCCCTTGAGGAGGTTGGAGGCAGAGACTGATTCAACGGCGCGGACGTC
AAAGGCGTCGAGGGGAGATAGGTGAGCAGCAGCTGCGGCTAGATCCCTCT
CCTTCATGAGAGAGAATGAAGAAGGGGGGAAGAAAGAGGTTGCTTCTACA
GGGGCAGCAGCGTCTTGACCTTGCCCCTCTGTGAAAGAGGAGGACGAGGA
GGGAGGCGGGAAGGAGAGGGGGCTGCCTTCGAGGAGGGGGCGCATGACCT
GGGCCAGCTGGGCGAGGTATGCATTTTCAAGCTCCTCCCATTTGGAAAGA
GAATACTCCGGCCCCTTGAAATACCCCGCGGCCTTAGGCAGGAGGTGGGT
GGTGTCGGAAAGGGAGCAGGTGGAGTCAAAATCTGTGACGAGGAGGATGG
GCTGATACCCCTTCCAATCCTCCCTTCCTCTCTCCCATTGCTCCGCGAAG
AAATTGTACTCGAGATTCATCGCTTTAAGGTACAGGGAGAACAACTTCTC
TTCCTCCCTCCTCTCCTCGTCCTCTTGCCATCCCTCCATCCCTCCCTCCT
CCTCCCTTCTCCTCCTCCTCTCTTCCCTCTCTCTGGCGGCTTCGGTGTCC
AACAAGGCCTCTACGGCGGCGGCGCTGGCTTCGAAGGCAGGGCTAGAATA
CACATCCAGCCAAGCACGGAGGGAGGGAGGGAAGGAAGACGAGGAGGACG
ACGCAGGCACCTCTCCTACATTTGGTATTGTAGGTATGGATAGGGATTCT
CCAGCCCCCCGTTCCCTCCCTTCCGCCATCCCCTCCTCCACTACCTCGAC
CAACCTCCTCCCTACATGGGCATACAGCCGCATACACGGGGTCAATGCCG
CCAAAATGTGAGCGATGGAGCTGGAGGGAGAAGATGCCTTGGAGATGAGG
AAGGAGGTGTAGGCGAGACAAGCGGGGGAGGGGATGAGAGGGGGGATGGT
GGTGGTGGTGGTGGAGGAGGTTTCTTGTCGACTTTCTTCTGCCACGTCGT
TACCATTCGCAGCATTTTCCCTAGTGTCCCTATAGCTATTACTGCTGGTA
GCACAACCGTTTCCTCCTCCCTTGCAGCTTTCACCCTGCACCCCTCCCTC
CTTCTCTAATACAGAGGAGTGAAGCTCTAATTCTTCCACAACCGCAGCAA
TCATTCCGCTCAGCGCCACCACTGTCTTTGGGTCCTCTGCTTTTGTCATG
GCATGTGCGTAAGCTTTTGCAAAGCTCTGTAAAAAATGAGCGTCTTGCGC
GGCGTAGGCTTGGAAGAGAGGGAGGGGAAGGGTGCCCTGCCCGATGGAGC
GGACAAAGGGGTGGTGAAGGACAGCGTGGGCCATAGGGAGGGAGGCTTGC
CAGAGACGGCGGGAGAGGGGAGGGACAGGAGGGATGGACGTCATCATGGT
GGTTCGAGAAGGGGTGAAGGCGATCGGGTTGCCCATGCTAGGAACAAGGG
GGGTTCTGGCAGGGAGAGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAA
GCCGAGGCTAGGAGAAGGAAGCAACAGCACTGCCGCAAGAGGAGAGGTCC
ACGGATCGATGGGTGAAAGCGTTGGTACGAAATCAAGGTCCGGTTCATGC
AAAGGGAGGAGGAGGCGGCGGGTAATAGACGAGGGGGACAGAGCTGTGAG
GTCCAGGAACACACAGGAGGGGGGAGGTTTTGACGTTGAACCCGATGGAT
TTATTATTTTGTTGATGGTGGCCTGTTGGTTGATTTCGATGATTTAGTAA
ACGTGGCATGACGAAGGGAGGACAAAGGCCTACGGCATTCAATACATTGG
AACAATAAATTAAAACCGTACTCCTGCCCCTCAACCGGTCATTCTCCTCC
TTTTCCCTCGCATCTCGTTCAGACCCTCTCGCTCTACGTTGTGTGTGGAA
AGAGGGCGTTTGGTTTGTTGCATTGAAGATACAAGCAACGGAGCGATTGT
TTCGACCTTGTCCGCCTCCGCCTTTCTCTCTCATAAGGCGTACGTTTGCC
CTCCCCACCGCAAAGTATGGTGTGTATGTGGATGTGAAGgtaggagaaac
aggcattgggtgcccggtggcagcggaggtggtacggaaggtccctggtg
ctcgctgctcgtgcaagagaggacttacctcgagtaagctgctggtattt
cctcacccttaccattcccttccaacccacatcatcacacagACACCGCT
TCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCCACCCTCTTTGTC
GCCGCCGTCGTCGCCCTCATGGCCCTGgtgagtgcttcctttctgccctc
ccacccctcgacccagacatacagcgagtgtgccaaacaggcatggtgga
caccacgcttttcgatgtgatttgtaagaggaagccgattttgcaggagt
atgagaagaagagaagagagaagagggatgcgggcaaccgcggaaaatct
cttcacagaatggttccctgtcttcatcaaccaccttcgatgactttttc
ctcttgcctgcaccattcgggagggctttgtacggcgcttcttcgattct
actccctcgccttggccttctttctcacccctcttcccttctttgctctt
tcgccatcaatcacacccatatagAGCGCTAGCGCTTTCATCCCCGCCGC
CAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCAAGGCCGCCACCA
GCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTGGCCCCTGCTGCT
TTCCTGACCGCCCCTGCTTTCGCCGCTGgtatggataagtgggggagggg
tgggtgaggatgggatcgaaagagagcgaacacatttctgaaatggaaaa
agcgtcacaagttgaaaggacctgcaactcgttccaccggtactcacaca
tatattgtcctctttcccttgaaactcacattctgtttccatcatacagA
CCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGCTGGAAgtaagta
gaatgcgtcttcaccgtcccctctctcctttgtttctctccctgtcttcg
ctttctgccgtctcctgtacttctgttcttctcgaagtgatttgttgtcg
attggcgaactttccctccctctttctcccttctcagcgtcatcgtgcgt
catcgtgcctctttttttctcacctgcttccctttccttcctccatccct
tcctcccccacaagGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGC
ACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTC
CCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAAGCAATGCGTTCT
GCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGGGAGTTGTCAACC
ATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCAAAGGCGTGGAGG
CAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGTAGTGATGGGATG
TGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGGGGGGTAAAGGTG
GAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTTTAGAGAGCAAGA
TGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATGCGTCCTTGACGT
ACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGGCGTGCTTGCTTT
ACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTGCAGGAGGATAGG
ACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGAGAAAAAACAAAA
CTCATACTAACAACAACTGCGG
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protein sequence of NO18G00770.1

>NO18G00770.1-protein ID=NO18G00770.1-protein|Name=NO18G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MARTSTLFVAAVVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVP
AVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVP
VAFLIILYIQSESRKAGEAAGRGD*
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protein sequence of NO18G00770.2

>NO18G00770.2-protein ID=NO18G00770.2-protein|Name=NO18G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MARTSTLFVAAVVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVP
AVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVP
VAFLIILYIQSESRKAGEAAGRGD*
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Synonyms
Publications