|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:293763..297734 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00770.1 vs.
Match: XP_002184128.1 (photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1]; EEC44306.1 photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 75.9 bits (185), Expect = 1.000e-10 Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0
Query: 54 AGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR 123
AG P A L APAFA D I+ ALP+ V+LEV F AYLAV LGT +P FLI L+IQ+ESRKAG A G+
Sbjct: 37 AGALPVAALAAPAFALDSIVEALPTNTVALEVQFGAYLAVALGTLLPCLFLINLFIQTESRKAGRAGGQ 105
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00770.1 ID=NO18G00770.1|Name=NO18G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3080bp GAGGAGGAGGAGGAGGAGGAGGAGACAAGGGCATCAGCGTAACGAAGGAC CGGAGCACAGTGTGGTTGGAGGGCGAGGGAGGACACAAAGGAGGAGGAGG TGGATAAAGGGGTGGAAGAGAGGAGGAGGCCGGGAAGGAGGGAGAGGTCG ATGCCCTTGAGGAGGTTGGAGGCAGAGACTGATTCAACGGCGCGGACGTC AAAGGCGTCGAGGGGAGATAGGTGAGCAGCAGCTGCGGCTAGATCCCTCT CCTTCATGAGAGAGAATGAAGAAGGGGGGAAGAAAGAGGTTGCTTCTACA GGGGCAGCAGCGTCTTGACCTTGCCCCTCTGTGAAAGAGGAGGACGAGGA GGGAGGCGGGAAGGAGAGGGGGCTGCCTTCGAGGAGGGGGCGCATGACCT GGGCCAGCTGGGCGAGGTATGCATTTTCAAGCTCCTCCCATTTGGAAAGA GAATACTCCGGCCCCTTGAAATACCCCGCGGCCTTAGGCAGGAGGTGGGT GGTGTCGGAAAGGGAGCAGGTGGAGTCAAAATCTGTGACGAGGAGGATGG GCTGATACCCCTTCCAATCCTCCCTTCCTCTCTCCCATTGCTCCGCGAAG AAATTGTACTCGAGATTCATCGCTTTAAGGTACAGGGAGAACAACTTCTC TTCCTCCCTCCTCTCCTCGTCCTCTTGCCATCCCTCCATCCCTCCCTCCT CCTCCCTTCTCCTCCTCCTCTCTTCCCTCTCTCTGGCGGCTTCGGTGTCC AACAAGGCCTCTACGGCGGCGGCGCTGGCTTCGAAGGCAGGGCTAGAATA CACATCCAGCCAAGCACGGAGGGAGGGAGGGAAGGAAGACGAGGAGGACG ACGCAGGCACCTCTCCTACATTTGGTATTGTAGGTATGGATAGGGATTCT CCAGCCCCCCGTTCCCTCCCTTCCGCCATCCCCTCCTCCACTACCTCGAC CAACCTCCTCCCTACATGGGCATACAGCCGCATACACGGGGTCAATGCCG CCAAAATGTGAGCGATGGAGCTGGAGGGAGAAGATGCCTTGGAGATGAGG AAGGAGGTGTAGGCGAGACAAGCGGGGGAGGGGATGAGAGGGGGGATGGT GGTGGTGGTGGTGGAGGAGGTTTCTTGTCGACTTTCTTCTGCCACGTCGT TACCATTCGCAGCATTTTCCCTAGTGTCCCTATAGCTATTACTGCTGGTA GCACAACCGTTTCCTCCTCCCTTGCAGCTTTCACCCTGCACCCCTCCCTC CTTCTCTAATACAGAGGAGTGAAGCTCTAATTCTTCCACAACCGCAGCAA TCATTCCGCTCAGCGCCACCACTGTCTTTGGGTCCTCTGCTTTTGTCATG GCATGTGCGTAAGCTTTTGCAAAGCTCTGTAAAAAATGAGCGTCTTGCGC GGCGTAGGCTTGGAAGAGAGGGAGGGGAAGGGTGCCCTGCCCGATGGAGC GGACAAAGGGGTGGTGAAGGACAGCGTGGGCCATAGGGAGGGAGGCTTGC CAGAGACGGCGGGAGAGGGGAGGGACAGGAGGGATGGACGTCATCATGGT GGTTCGAGAAGGGGTGAAGGCGATCGGGTTGCCCATGCTAGGAACAAGGG GGGTTCTGGCAGGGAGAGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAA GCCGAGGCTAGGAGAAGGAAGCAACAGCACTGCCGCAAGAGGAGAGGTCC ACGGATCGATGGGTGAAAGCGTTGGTACGAAATCAAGGTCCGGTTCATGC AAAGGGAGGAGGAGGCGGCGGGTAATAGACGAGGGGGACAGAGCTGTGAG GTCCAGGAACACACAGGAGGGGGGAGGTTTTGACGTTGAACCCGATGGAT TTATTATTTTGTTGATGGTGGCCTGTTGGTTGATTTCGATGATTTAGTAA ACGTGGCATGACGAAGGGAGGACAAAGGCCTACGGCATTCAATACATTGG AACAATAAATTAAAACCGTACTCCTGCCCCTCAACCGGTCATTCTCCTCC TTTTCCCTCGCATCTCGTTCAGACCCTCTCGCTCTACGTTGTGTGTGGAA AGAGGGCGTTTGGTTTGTTGCATTGAAGATACAAGCAACGGAGCGATTGT TTCGACCTTGTCCGCCTCCGCCTTTCTCTCTCATAAGGCGTACGTTTGCC CTCCCCACCGCAAAGTATGGTGTGTATGTGGATGTGAAGACACCGCTTCT ATCTCCATTTAATCTTCACAATGGCCCGCACGTCCACCCTCTTTGTCGCC GCCGTCGTCGCCCTCATGGCCCTGAGCGCTAGCGCTTTCATCCCCGCCGC CAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCAAGGCCGCCACCA GCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTGGCCCCTGCTGCT TTCCTGACCGCCCCTGCTTTCGCCGCTGACCAGATCATGACCGCTCTGCC CTCCACCCTCGTCTCGCTGGAAGTGACCTTCGCCGCCTACCTGGCTGTAC TCCTCGGCACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACATCCAA TCGGAGTCCCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAAGCAA TGCGTTCTGCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGGGAGT TGTCAACCATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCAAAGG CGTGGAGGCAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGTAGTG ATGGGATGTGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGGGGGG TAAAGGTGGAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTTTAGA GAGCAAGATGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATGCGTC CTTGACGTACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGGCGTG CTTGCTTTACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTGCAGG AGGATAGGACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGAGAAA AAACAAAACTCATACTAACAACAACTGCGG back to topprotein sequence of NO18G00770.1 >NO18G00770.1-protein ID=NO18G00770.1-protein|Name=NO18G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp MARTSTLFVAAVVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVP AVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVP VAFLIILYIQSESRKAGEAAGRGD* back to topmRNA from alignment at chr18:293763..297734+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00770.1 ID=NO18G00770.1|Name=NO18G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3972bp|location=Sequence derived from alignment at chr18:293763..297734+ (Nannochloropsis oceanica) GAGGAGGAGGAGGAGGAGGAGGAGACAAGGGCATCAGCGTAACGAAGGAC
CGGAGCACAGTGTGGTTGGAGGGCGAGGGAGGACACAAAGGAGGAGGAGG
TGGATAAAGGGGTGGAAGAGAGGAGGAGGCCGGGAAGGAGGGAGAGGTCG
ATGCCCTTGAGGAGGTTGGAGGCAGAGACTGATTCAACGGCGCGGACGTC
AAAGGCGTCGAGGGGAGATAGGTGAGCAGCAGCTGCGGCTAGATCCCTCT
CCTTCATGAGAGAGAATGAAGAAGGGGGGAAGAAAGAGGTTGCTTCTACA
GGGGCAGCAGCGTCTTGACCTTGCCCCTCTGTGAAAGAGGAGGACGAGGA
GGGAGGCGGGAAGGAGAGGGGGCTGCCTTCGAGGAGGGGGCGCATGACCT
GGGCCAGCTGGGCGAGGTATGCATTTTCAAGCTCCTCCCATTTGGAAAGA
GAATACTCCGGCCCCTTGAAATACCCCGCGGCCTTAGGCAGGAGGTGGGT
GGTGTCGGAAAGGGAGCAGGTGGAGTCAAAATCTGTGACGAGGAGGATGG
GCTGATACCCCTTCCAATCCTCCCTTCCTCTCTCCCATTGCTCCGCGAAG
AAATTGTACTCGAGATTCATCGCTTTAAGGTACAGGGAGAACAACTTCTC
TTCCTCCCTCCTCTCCTCGTCCTCTTGCCATCCCTCCATCCCTCCCTCCT
CCTCCCTTCTCCTCCTCCTCTCTTCCCTCTCTCTGGCGGCTTCGGTGTCC
AACAAGGCCTCTACGGCGGCGGCGCTGGCTTCGAAGGCAGGGCTAGAATA
CACATCCAGCCAAGCACGGAGGGAGGGAGGGAAGGAAGACGAGGAGGACG
ACGCAGGCACCTCTCCTACATTTGGTATTGTAGGTATGGATAGGGATTCT
CCAGCCCCCCGTTCCCTCCCTTCCGCCATCCCCTCCTCCACTACCTCGAC
CAACCTCCTCCCTACATGGGCATACAGCCGCATACACGGGGTCAATGCCG
CCAAAATGTGAGCGATGGAGCTGGAGGGAGAAGATGCCTTGGAGATGAGG
AAGGAGGTGTAGGCGAGACAAGCGGGGGAGGGGATGAGAGGGGGGATGGT
GGTGGTGGTGGTGGAGGAGGTTTCTTGTCGACTTTCTTCTGCCACGTCGT
TACCATTCGCAGCATTTTCCCTAGTGTCCCTATAGCTATTACTGCTGGTA
GCACAACCGTTTCCTCCTCCCTTGCAGCTTTCACCCTGCACCCCTCCCTC
CTTCTCTAATACAGAGGAGTGAAGCTCTAATTCTTCCACAACCGCAGCAA
TCATTCCGCTCAGCGCCACCACTGTCTTTGGGTCCTCTGCTTTTGTCATG
GCATGTGCGTAAGCTTTTGCAAAGCTCTGTAAAAAATGAGCGTCTTGCGC
GGCGTAGGCTTGGAAGAGAGGGAGGGGAAGGGTGCCCTGCCCGATGGAGC
GGACAAAGGGGTGGTGAAGGACAGCGTGGGCCATAGGGAGGGAGGCTTGC
CAGAGACGGCGGGAGAGGGGAGGGACAGGAGGGATGGACGTCATCATGGT
GGTTCGAGAAGGGGTGAAGGCGATCGGGTTGCCCATGCTAGGAACAAGGG
GGGTTCTGGCAGGGAGAGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAA
GCCGAGGCTAGGAGAAGGAAGCAACAGCACTGCCGCAAGAGGAGAGGTCC
ACGGATCGATGGGTGAAAGCGTTGGTACGAAATCAAGGTCCGGTTCATGC
AAAGGGAGGAGGAGGCGGCGGGTAATAGACGAGGGGGACAGAGCTGTGAG
GTCCAGGAACACACAGGAGGGGGGAGGTTTTGACGTTGAACCCGATGGAT
TTATTATTTTGTTGATGGTGGCCTGTTGGTTGATTTCGATGATTTAGTAA
ACGTGGCATGACGAAGGGAGGACAAAGGCCTACGGCATTCAATACATTGG
AACAATAAATTAAAACCGTACTCCTGCCCCTCAACCGGTCATTCTCCTCC
TTTTCCCTCGCATCTCGTTCAGACCCTCTCGCTCTACGTTGTGTGTGGAA
AGAGGGCGTTTGGTTTGTTGCATTGAAGATACAAGCAACGGAGCGATTGT
TTCGACCTTGTCCGCCTCCGCCTTTCTCTCTCATAAGGCGTACGTTTGCC
CTCCCCACCGCAAAGTATGGTGTGTATGTGGATGTGAAGGTAGGAGAAAC
AGGCATTGGGTGCCCGGTGGCAGCGGAGGTGGTACGGAAGGTCCCTGGTG
CTCGCTGCTCGTGCAAGAGAGGACTTACCTCGAGTAAGCTGCTGGTATTT
CCTCACCCTTACCATTCCCTTCCAACCCACATCATCACACAGACACCGCT
TCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCCACCCTCTTTGTC
GCCGCCGTCGTCGCCCTCATGGCCCTGGTGAGTGCTTCCTTTCTGCCCTC
CCACCCCTCGACCCAGACATACAGCGAGTGTGCCAAACAGGCATGGTGGA
CACCACGCTTTTCGATGTGATTTGTAAGAGGAAGCCGATTTTGCAGGAGT
ATGAGAAGAAGAGAAGAGAGAAGAGGGATGCGGGCAACCGCGGAAAATCT
CTTCACAGAATGGTTCCCTGTCTTCATCAACCACCTTCGATGACTTTTTC
CTCTTGCCTGCACCATTCGGGAGGGCTTTGTACGGCGCTTCTTCGATTCT
ACTCCCTCGCCTTGGCCTTCTTTCTCACCCCTCTTCCCTTCTTTGCTCTT
TCGCCATCAATCACACCCATATAGAGCGCTAGCGCTTTCATCCCCGCCGC
CAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCAAGGCCGCCACCA
GCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTGGCCCCTGCTGCT
TTCCTGACCGCCCCTGCTTTCGCCGCTGGTATGGATAAGTGGGGGAGGGG
TGGGTGAGGATGGGATCGAAAGAGAGCGAACACATTTCTGAAATGGAAAA
AGCGTCACAAGTTGAAAGGACCTGCAACTCGTTCCACCGGTACTCACACA
TATATTGTCCTCTTTCCCTTGAAACTCACATTCTGTTTCCATCATACAGA
CCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGCTGGAAGTAAGTA
GAATGCGTCTTCACCGTCCCCTCTCTCCTTTGTTTCTCTCCCTGTCTTCG
CTTTCTGCCGTCTCCTGTACTTCTGTTCTTCTCGAAGTGATTTGTTGTCG
ATTGGCGAACTTTCCCTCCCTCTTTCTCCCTTCTCAGCGTCATCGTGCGT
CATCGTGCCTCTTTTTTTCTCACCTGCTTCCCTTTCCTTCCTCCATCCCT
TCCTCCCCCACAAGGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGC
ACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTC
CCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAAGCAATGCGTTCT
GCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGGGAGTTGTCAACC
ATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCAAAGGCGTGGAGG
CAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGTAGTGATGGGATG
TGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGGGGGGTAAAGGTG
GAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTTTAGAGAGCAAGA
TGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATGCGTCCTTGACGT
ACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGGCGTGCTTGCTTT
ACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTGCAGGAGGATAGG
ACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGAGAAAAAACAAAA
CTCATACTAACAACAACTGCGG back to topCoding sequence (CDS) from alignment at chr18:293763..297734+ >NO18G00770.1 ID=NO18G00770.1|Name=NO18G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr18:293763..297734+ (Nannochloropsis oceanica) ATGGCCCGCACGTCCACCCTCTTTGTCGCCGCCGTCGTCGCCCTCATGGC CCTGAGCGCTAGCGCTTTCATCCCCGCCGCCAAGGTGGTGCAGCCCGCTG CTGTCACTGTCGGCCGCAAGGCCGCCACCAGCATGAAGCTTGACGTGCCC GCGGTGGTTGCCGGCCTGGCCCCTGCTGCTTTCCTGACCGCCCCTGCTTT CGCCGCTGACCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGCTGG AAGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGCACTTTTGTCCCC GTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTCCCGCAAGGCTGG TGAGGCCGCTGGGCGAGGAGATTAA back to top
|