NO18G00770.2, NO18G00770.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00770.2
Unique NameNO18G00770.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3233
Alignment locationchr18:293763..297734 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:293763..297734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00770.2 vs.
Match: XP_002184128.1 (photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1]; EEC44306.1 photosystem II subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.9 bits (185), Expect = 1.000e-10
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0 
Query:   54 AGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVPVAFLIILYIQSESRKAGEAAGR 123
            AG  P A L APAFA D I+ ALP+  V+LEV F AYLAV LGT +P  FLI L+IQ+ESRKAG A G+
Sbjct:   37 AGALPVAALAAPAFALDSIVEALPTNTVALEVQFGAYLAVALGTLLPCLFLINLFIQTESRKAGRAGGQ 105
The following BLAST results are available for this feature:
BLAST of NO18G00770.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002184128.11.000e-1062.32photosystem II subunit [Phaeodactylum tricornutum ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00770NO18G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00770.2NO18G00770.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00770.2.cds1NO18G00770.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00770.2.cds2NO18G00770.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00770.2.cds3NO18G00770.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00770.2.cds4NO18G00770.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00770.2 ID=NO18G00770.2|Name=NO18G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=3233bp
GAGGAGGAGGAGGAGGAGGAGGAGACAAGGGCATCAGCGTAACGAAGGAC
CGGAGCACAGTGTGGTTGGAGGGCGAGGGAGGACACAAAGGAGGAGGAGG
TGGATAAAGGGGTGGAAGAGAGGAGGAGGCCGGGAAGGAGGGAGAGGTCG
ATGCCCTTGAGGAGGTTGGAGGCAGAGACTGATTCAACGGCGCGGACGTC
AAAGGCGTCGAGGGGAGATAGGTGAGCAGCAGCTGCGGCTAGATCCCTCT
CCTTCATGAGAGAGAATGAAGAAGGGGGGAAGAAAGAGGTTGCTTCTACA
GGGGCAGCAGCGTCTTGACCTTGCCCCTCTGTGAAAGAGGAGGACGAGGA
GGGAGGCGGGAAGGAGAGGGGGCTGCCTTCGAGGAGGGGGCGCATGACCT
GGGCCAGCTGGGCGAGGTATGCATTTTCAAGCTCCTCCCATTTGGAAAGA
GAATACTCCGGCCCCTTGAAATACCCCGCGGCCTTAGGCAGGAGGTGGGT
GGTGTCGGAAAGGGAGCAGGTGGAGTCAAAATCTGTGACGAGGAGGATGG
GCTGATACCCCTTCCAATCCTCCCTTCCTCTCTCCCATTGCTCCGCGAAG
AAATTGTACTCGAGATTCATCGCTTTAAGGTACAGGGAGAACAACTTCTC
TTCCTCCCTCCTCTCCTCGTCCTCTTGCCATCCCTCCATCCCTCCCTCCT
CCTCCCTTCTCCTCCTCCTCTCTTCCCTCTCTCTGGCGGCTTCGGTGTCC
AACAAGGCCTCTACGGCGGCGGCGCTGGCTTCGAAGGCAGGGCTAGAATA
CACATCCAGCCAAGCACGGAGGGAGGGAGGGAAGGAAGACGAGGAGGACG
ACGCAGGCACCTCTCCTACATTTGGTATTGTAGGTATGGATAGGGATTCT
CCAGCCCCCCGTTCCCTCCCTTCCGCCATCCCCTCCTCCACTACCTCGAC
CAACCTCCTCCCTACATGGGCATACAGCCGCATACACGGGGTCAATGCCG
CCAAAATGTGAGCGATGGAGCTGGAGGGAGAAGATGCCTTGGAGATGAGG
AAGGAGGTGTAGGCGAGACAAGCGGGGGAGGGGATGAGAGGGGGGATGGT
GGTGGTGGTGGTGGAGGAGGTTTCTTGTCGACTTTCTTCTGCCACGTCGT
TACCATTCGCAGCATTTTCCCTAGTGTCCCTATAGCTATTACTGCTGGTA
GCACAACCGTTTCCTCCTCCCTTGCAGCTTTCACCCTGCACCCCTCCCTC
CTTCTCTAATACAGAGGAGTGAAGCTCTAATTCTTCCACAACCGCAGCAA
TCATTCCGCTCAGCGCCACCACTGTCTTTGGGTCCTCTGCTTTTGTCATG
GCATGTGCGTAAGCTTTTGCAAAGCTCTGTAAAAAATGAGCGTCTTGCGC
GGCGTAGGCTTGGAAGAGAGGGAGGGGAAGGGTGCCCTGCCCGATGGAGC
GGACAAAGGGGTGGTGAAGGACAGCGTGGGCCATAGGGAGGGAGGCTTGC
CAGAGACGGCGGGAGAGGGGAGGGACAGGAGGGATGGACGTCATCATGGT
GGTTCGAGAAGGGGTGAAGGCGATCGGGTTGCCCATGCTAGGAACAAGGG
GGGTTCTGGCAGGGAGAGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAA
GCCGAGGCTAGGAGAAGGAAGCAACAGCACTGCCGCAAGAGGAGAGGTCC
ACGGATCGATGGGTGAAAGCGTTGGTACGAAATCAAGGTCCGGTTCATGC
AAAGGGAGGAGGAGGCGGCGGGTAATAGACGAGGGGGACAGAGCTGTGAG
GTCCAGGAACACACAGGAGGGGGGAGGTTTTGACGTTGAACCCGATGGAT
TTATTATTTTGTTGATGGTGGCCTGTTGGTTGATTTCGATGATTTAGTAA
ACGTGGCATGACGAAGGGAGGACAAAGGCCTACGGCATTCAATACATTGG
AACAATAAATTAAAACCGTACTCCTGCCCCTCAACCGGTCATTCTCCTCC
TTTTCCCTCGCATCTCGTTCAGACCCTCTCGCTCTACGTTGTGTGTGGAA
AGAGGGCGTTTGGTTTGTTGCATTGAAGATACAAGCAACGGAGCGATTGT
TTCGACCTTGTCCGCCTCCGCCTTTCTCTCTCATAAGGCGTACGTTTGCC
CTCCCCACCGCAAAGTATGGTGTGTATGTGGATGTGAAGGTAGGAGAAAC
AGGCATTGGGTGCCCGGTGGCAGCGGAGGTGGTACGGAAGGTCCCTGGTG
CTCGCTGCTCGTGCAAGAGAGGACTTACCTCGAGTAAGCTGCTGGTATTT
CCTCACCCTTACCATTCCCTTCCAACCCACATCATCACACAGACACCGCT
TCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCCACCCTCTTTGTC
GCCGCCGTCGTCGCCCTCATGGCCCTGAGCGCTAGCGCTTTCATCCCCGC
CGCCAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCAAGGCCGCCA
CCAGCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTGGCCCCTGCT
GCTTTCCTGACCGCCCCTGCTTTCGCCGCTGACCAGATCATGACCGCTCT
GCCCTCCACCCTCGTCTCGCTGGAAGTGACCTTCGCCGCCTACCTGGCTG
TACTCCTCGGCACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACATC
CAATCGGAGTCCCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAAG
CAATGCGTTCTGCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGGG
AGTTGTCAACCATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCAA
AGGCGTGGAGGCAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGTA
GTGATGGGATGTGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGGG
GGGTAAAGGTGGAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTTT
AGAGAGCAAGATGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATGC
GTCCTTGACGTACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGGC
GTGCTTGCTTTACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTGC
AGGAGGATAGGACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGAG
AAAAAACAAAACTCATACTAACAACAACTGCGG
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protein sequence of NO18G00770.2

>NO18G00770.2-protein ID=NO18G00770.2-protein|Name=NO18G00770.2|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MARTSTLFVAAVVALMALSASAFIPAAKVVQPAAVTVGRKAATSMKLDVP
AVVAGLAPAAFLTAPAFAADQIMTALPSTLVSLEVTFAAYLAVLLGTFVP
VAFLIILYIQSESRKAGEAAGRGD*
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mRNA from alignment at chr18:293763..297734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00770.2 ID=NO18G00770.2|Name=NO18G00770.2|organism=Nannochloropsis oceanica|type=mRNA|length=3972bp|location=Sequence derived from alignment at chr18:293763..297734+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGACAAGGGCATCAGCGTAACGAAGGAC
CGGAGCACAGTGTGGTTGGAGGGCGAGGGAGGACACAAAGGAGGAGGAGG
TGGATAAAGGGGTGGAAGAGAGGAGGAGGCCGGGAAGGAGGGAGAGGTCG
ATGCCCTTGAGGAGGTTGGAGGCAGAGACTGATTCAACGGCGCGGACGTC
AAAGGCGTCGAGGGGAGATAGGTGAGCAGCAGCTGCGGCTAGATCCCTCT
CCTTCATGAGAGAGAATGAAGAAGGGGGGAAGAAAGAGGTTGCTTCTACA
GGGGCAGCAGCGTCTTGACCTTGCCCCTCTGTGAAAGAGGAGGACGAGGA
GGGAGGCGGGAAGGAGAGGGGGCTGCCTTCGAGGAGGGGGCGCATGACCT
GGGCCAGCTGGGCGAGGTATGCATTTTCAAGCTCCTCCCATTTGGAAAGA
GAATACTCCGGCCCCTTGAAATACCCCGCGGCCTTAGGCAGGAGGTGGGT
GGTGTCGGAAAGGGAGCAGGTGGAGTCAAAATCTGTGACGAGGAGGATGG
GCTGATACCCCTTCCAATCCTCCCTTCCTCTCTCCCATTGCTCCGCGAAG
AAATTGTACTCGAGATTCATCGCTTTAAGGTACAGGGAGAACAACTTCTC
TTCCTCCCTCCTCTCCTCGTCCTCTTGCCATCCCTCCATCCCTCCCTCCT
CCTCCCTTCTCCTCCTCCTCTCTTCCCTCTCTCTGGCGGCTTCGGTGTCC
AACAAGGCCTCTACGGCGGCGGCGCTGGCTTCGAAGGCAGGGCTAGAATA
CACATCCAGCCAAGCACGGAGGGAGGGAGGGAAGGAAGACGAGGAGGACG
ACGCAGGCACCTCTCCTACATTTGGTATTGTAGGTATGGATAGGGATTCT
CCAGCCCCCCGTTCCCTCCCTTCCGCCATCCCCTCCTCCACTACCTCGAC
CAACCTCCTCCCTACATGGGCATACAGCCGCATACACGGGGTCAATGCCG
CCAAAATGTGAGCGATGGAGCTGGAGGGAGAAGATGCCTTGGAGATGAGG
AAGGAGGTGTAGGCGAGACAAGCGGGGGAGGGGATGAGAGGGGGGATGGT
GGTGGTGGTGGTGGAGGAGGTTTCTTGTCGACTTTCTTCTGCCACGTCGT
TACCATTCGCAGCATTTTCCCTAGTGTCCCTATAGCTATTACTGCTGGTA
GCACAACCGTTTCCTCCTCCCTTGCAGCTTTCACCCTGCACCCCTCCCTC
CTTCTCTAATACAGAGGAGTGAAGCTCTAATTCTTCCACAACCGCAGCAA
TCATTCCGCTCAGCGCCACCACTGTCTTTGGGTCCTCTGCTTTTGTCATG
GCATGTGCGTAAGCTTTTGCAAAGCTCTGTAAAAAATGAGCGTCTTGCGC
GGCGTAGGCTTGGAAGAGAGGGAGGGGAAGGGTGCCCTGCCCGATGGAGC
GGACAAAGGGGTGGTGAAGGACAGCGTGGGCCATAGGGAGGGAGGCTTGC
CAGAGACGGCGGGAGAGGGGAGGGACAGGAGGGATGGACGTCATCATGGT
GGTTCGAGAAGGGGTGAAGGCGATCGGGTTGCCCATGCTAGGAACAAGGG
GGGTTCTGGCAGGGAGAGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAA
GCCGAGGCTAGGAGAAGGAAGCAACAGCACTGCCGCAAGAGGAGAGGTCC
ACGGATCGATGGGTGAAAGCGTTGGTACGAAATCAAGGTCCGGTTCATGC
AAAGGGAGGAGGAGGCGGCGGGTAATAGACGAGGGGGACAGAGCTGTGAG
GTCCAGGAACACACAGGAGGGGGGAGGTTTTGACGTTGAACCCGATGGAT
TTATTATTTTGTTGATGGTGGCCTGTTGGTTGATTTCGATGATTTAGTAA
ACGTGGCATGACGAAGGGAGGACAAAGGCCTACGGCATTCAATACATTGG
AACAATAAATTAAAACCGTACTCCTGCCCCTCAACCGGTCATTCTCCTCC
TTTTCCCTCGCATCTCGTTCAGACCCTCTCGCTCTACGTTGTGTGTGGAA
AGAGGGCGTTTGGTTTGTTGCATTGAAGATACAAGCAACGGAGCGATTGT
TTCGACCTTGTCCGCCTCCGCCTTTCTCTCTCATAAGGCGTACGTTTGCC
CTCCCCACCGCAAAGTATGGTGTGTATGTGGATGTGAAGGTAGGAGAAAC
AGGCATTGGGTGCCCGGTGGCAGCGGAGGTGGTACGGAAGGTCCCTGGTG
CTCGCTGCTCGTGCAAGAGAGGACTTACCTCGAGTAAGCTGCTGGTATTT
CCTCACCCTTACCATTCCCTTCCAACCCACATCATCACACAGACACCGCT
TCTATCTCCATTTAATCTTCACAATGGCCCGCACGTCCACCCTCTTTGTC
GCCGCCGTCGTCGCCCTCATGGCCCTGGTGAGTGCTTCCTTTCTGCCCTC
CCACCCCTCGACCCAGACATACAGCGAGTGTGCCAAACAGGCATGGTGGA
CACCACGCTTTTCGATGTGATTTGTAAGAGGAAGCCGATTTTGCAGGAGT
ATGAGAAGAAGAGAAGAGAGAAGAGGGATGCGGGCAACCGCGGAAAATCT
CTTCACAGAATGGTTCCCTGTCTTCATCAACCACCTTCGATGACTTTTTC
CTCTTGCCTGCACCATTCGGGAGGGCTTTGTACGGCGCTTCTTCGATTCT
ACTCCCTCGCCTTGGCCTTCTTTCTCACCCCTCTTCCCTTCTTTGCTCTT
TCGCCATCAATCACACCCATATAGAGCGCTAGCGCTTTCATCCCCGCCGC
CAAGGTGGTGCAGCCCGCTGCTGTCACTGTCGGCCGCAAGGCCGCCACCA
GCATGAAGCTTGACGTGCCCGCGGTGGTTGCCGGCCTGGCCCCTGCTGCT
TTCCTGACCGCCCCTGCTTTCGCCGCTGGTATGGATAAGTGGGGGAGGGG
TGGGTGAGGATGGGATCGAAAGAGAGCGAACACATTTCTGAAATGGAAAA
AGCGTCACAAGTTGAAAGGACCTGCAACTCGTTCCACCGGTACTCACACA
TATATTGTCCTCTTTCCCTTGAAACTCACATTCTGTTTCCATCATACAGA
CCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGCTGGAAGTAAGTA
GAATGCGTCTTCACCGTCCCCTCTCTCCTTTGTTTCTCTCCCTGTCTTCG
CTTTCTGCCGTCTCCTGTACTTCTGTTCTTCTCGAAGTGATTTGTTGTCG
ATTGGCGAACTTTCCCTCCCTCTTTCTCCCTTCTCAGCGTCATCGTGCGT
CATCGTGCCTCTTTTTTTCTCACCTGCTTCCCTTTCCTTCCTCCATCCCT
TCCTCCCCCACAAGGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGC
ACTTTTGTCCCCGTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTC
CCGCAAGGCTGGTGAGGCCGCTGGGCGAGGAGATTAAAGCAATGCGTTCT
GCGAAGGAAAAATGCAGATGGTTGAGAGGATGGATGGGGAGTTGTCAACC
ATGAGAGAAAGGGACACAAGGCTATTTGCAGGCGGGCAAAGGCGTGGAGG
CAGAGCTTTGCGAAGGTGATGGTGTCATAGCAGAAAGTAGTGATGGGATG
TGGATTTTTTTACCGTACGGGTGTCATGAGAGGAGTGGGGGGTAAAGGTG
GAGGAGGAGGAGCAGCAGTGATGAAAGGCAGGGTAGTTTAGAGAGCAAGA
TGTCCGTCTTCCGTATTTTTTTTCCGTCTGTCATGATGCGTCCTTGACGT
ACGATAGTGATGAAATGGGAGGGGGAAATGAAAGGGGGCGTGCTTGCTTT
ACACGGGTGCCGTCTGAGTCTGGAGAAAAAGAAAACTGCAGGAGGATAGG
ACGGGGGAGGGGAAGAGGGTAGGAGAACCAATTAAAGAGAAAAAACAAAA
CTCATACTAACAACAACTGCGG
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Coding sequence (CDS) from alignment at chr18:293763..297734+

>NO18G00770.2 ID=NO18G00770.2|Name=NO18G00770.2|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr18:293763..297734+ (Nannochloropsis oceanica)
ATGGCCCGCACGTCCACCCTCTTTGTCGCCGCCGTCGTCGCCCTCATGGC
CCTGAGCGCTAGCGCTTTCATCCCCGCCGCCAAGGTGGTGCAGCCCGCTG
CTGTCACTGTCGGCCGCAAGGCCGCCACCAGCATGAAGCTTGACGTGCCC
GCGGTGGTTGCCGGCCTGGCCCCTGCTGCTTTCCTGACCGCCCCTGCTTT
CGCCGCTGACCAGATCATGACCGCTCTGCCCTCCACCCTCGTCTCGCTGG
AAGTGACCTTCGCCGCCTACCTGGCTGTACTCCTCGGCACTTTTGTCCCC
GTTGCCTTTCTCATCATTCTTTACATCCAATCGGAGTCCCGCAAGGCTGG
TGAGGCCGCTGGGCGAGGAGATTAA
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Synonyms
Publications