NO13G03400, NO13G03400 (gene) Nannochloropsis oceanica

Overview
NameNO13G03400
Unique NameNO13G03400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2738
Alignment locationchr13:1011580..1014317 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1011580..1014317 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO13G03400 vs. NCBI_GenBank
Match: EWM20770.1 (hypothetical protein Naga_100356g3 [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.200e-22
Identity = 89/232 (38.36%), Postives = 119/232 (51.29%), Query Frame = 0 
Query:    1 MCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPYSRTIFALDVLMGLVAGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTYVPVTTNATSSNRSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLLSRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWLGREGT--QRNERMMGSQKERKRVAMTRMEVQV 231
            +CL+G YL+GSLFG L GF+ KR+ FR +  G+  YSR +  +DV++                                       + +  +     R S +P  P     I   LVLF++   SVV G ++L LR+ L P LL Y+ L    KS + T+DD LS SW+LLQAGL TA AVK   +L  + RGKA+V WL R G   +R E  +   +ER RVAMTRMEV V
Sbjct:   53 VCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVV---------------------------------------LHLRAHQYQRRRHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLL---RKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQ-TVRGKALVGWLIRRGVGERRGEGELEGGRER-RVAMTRMEVNV 240
The following BLAST results are available for this feature:
BLAST of NO13G03400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20770.11.200e-2238.36hypothetical protein Naga_100356g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03400.3NO13G03400.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G03400.2NO13G03400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G03400.1NO13G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604629gene_8959Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100356g3gene9639Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03400.3NO13G03400.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G03400.2NO13G03400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G03400.1NO13G03400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03400 ID=NO13G03400|Name=NO13G03400|organism=Nannochloropsis oceanica|type=gene|length=2738bp
GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGgtaagagagaag
gatgaggatgaggaggagaaggaggatgagaaggagggggaggaagagga
aaatccagagggaaaggaggagggtagggtggggatgggacatgggatga
attggacctggactatgcccagactagaccagtaaaatgtgccatccaac
caagcaatcactcgttttttgcacatcacaaccctccgtttctgtccaca
gATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG
AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG
GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG
GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGgt
atggggagggggggggaagggagggaagtagagagggagagagggactgt
ggcctgcatgctcccttcacttcacttccattcgttttcttgaacctcga
ccaaattcattgtttttctatcattacctttctctcctcctgtttcgtag
GGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCC
TTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTC
AAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAAT
CGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCA
TTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCC
TCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACC
TTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGA
GGGAGGGAGAGTGAGAGGAAGGCCAATTTTGTCCTTAAAATCGACCTAAA
CCACCCACCCTCCCTCCCTCCCTCCTTCCCTCTTTCCCTTACATTCATCC
TCTAGGACGACGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGC
CTGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCC
GCGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGA
ATGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACG
CGAATGGAGGTGCAGGTGTAGATAATGTTATCTAGTAGAAAAGATATCAA
ATAAAAAAAACGAAAGCGGTGTGACTTAAGTCTTCAAA
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protein sequence of NO13G03400.3

>NO13G03400.3-protein ID=NO13G03400.3-protein|Name=NO13G03400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPSFPVTSERAEEEEKDMLAEVAWGEDDWDEESSWEGEEEEKDNDDSSSP
RQGRRGRGGDGGDGMCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPY
SRTIFALDVLMGLVAGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTY
VPVTTNATSSNRSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALR
RALGPTLLLYTFLLSRGKSKSRTVRSQEGGRVRGRPILSLKST*
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protein sequence of NO13G03400.2

>NO13G03400.2-protein ID=NO13G03400.2-protein|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPYSRTIFALDVLMGLV
AGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTYVPVTTNATSSNRSS
SFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLL
SRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWL
GREGTQRNERMMGSQKERKRVAMTRMEVQV*
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protein sequence of NO13G03400.1

>NO13G03400.1-protein ID=NO13G03400.1-protein|Name=NO13G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MPSFPVTSERAEEEEKDMLAEVAWGEDDWDEESSWEGEEEEKDNDDSSSP
RQGRRGRGGDGGDGMCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPY
SRTIFALDVLMGLVAGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTY
VPVTTNATSSNRSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALR
RALGPTLLLYTFLLSRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREF
LLCSPRGKAVVAWLGREGTQRNERMMGSQKERKRVAMTRMEVQV*
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Synonyms
Publications