NO13G03400.3, NO13G03400.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03400.3
Unique NameNO13G03400.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2373
Alignment locationchr13:1011580..1014317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1011580..1014317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03400.3 vs.
Match: XP_005855525.1 (hypothetical protein NGA_0609200 [Nannochloropsis gaditana CCMP526]; EKU20837.1 hypothetical protein NGA_0609200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 0 
Query:    1 MPSFPVTSERAEEEEKDMLAEV-AWGEDDWDEESSWEGEEEEKDNDDSSSPRQGRRGRGGDGGDGMCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPYSRTIFALDVLMGLVAG 117
            MP+  V  + A EEEK++  E+ A   D+W++E   EGE                R +   GGDG+CL+G YL+GSLFG L GF+ KR+ FR +  G+  YSR +  +DV++ L  G
Sbjct:    1 MPAQAVLKQGAAEEEKELKQEMTAMDGDEWEDEGEEEGEGHA-------------RSQARAGGDGVCLLGQYLLGSLFGALAGFVMKRLLFRGLGTGSGRYSRGLMGMDVVVRLAGG 104
The following BLAST results are available for this feature:
BLAST of NO13G03400.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855525.11.400e-839.32hypothetical protein NGA_0609200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03400NO13G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03400.3NO13G03400.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03400.3.cds1NO13G03400.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03400.3.cds2NO13G03400.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03400.3.cds3NO13G03400.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03400.3 ID=NO13G03400.3|Name=NO13G03400.3|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGATTCCTCTTCTC
CACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGGAGACGGAATGTGC
CTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTGTGGCTT
TATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAGTGCCTT
ATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTCGCCGGC
ATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCCTCCCTC
CTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGTACACTT
ATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCCTCCTTC
CCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGTCCTCTT
TTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCGCCCTCC
GCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTGAGTAGG
GGCAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGAGGGAGGGAGAGTGAG
AGGAAGGCCAATTTTGTCCTTAAAATCGACCTAAACCACCCACCCTCCCT
CCCTCCCTCCTTCCCTCTTTCCCTTACATTCATCCTCTAGGACGACGACG
CACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCA
GCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGT
AGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGG
GAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAG
GTGTAGATAATGTTATCTAGTAGAAAAGATATCAAATAAAAAAAACGAAA
GCGGTGTGACTTAAGTCTTCAAA
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protein sequence of NO13G03400.3

>NO13G03400.3-protein ID=NO13G03400.3-protein|Name=NO13G03400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPSFPVTSERAEEEEKDMLAEVAWGEDDWDEESSWEGEEEEKDNDDSSSP
RQGRRGRGGDGGDGMCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPY
SRTIFALDVLMGLVAGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTY
VPVTTNATSSNRSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALR
RALGPTLLLYTFLLSRGKSKSRTVRSQEGGRVRGRPILSLKST*
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mRNA from alignment at chr13:1011580..1014317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03400.3 ID=NO13G03400.3|Name=NO13G03400.3|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica)
GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGGTAAGAGAGAAG
GATGAGGATGAGGAGGAGAAGGAGGATGAGAAGGAGGGGGAGGAAGAGGA
AAATCCAGAGGGAAAGGAGGAGGGTAGGGTGGGGATGGGACATGGGATGA
ATTGGACCTGGACTATGCCCAGACTAGACCAGTAAAATGTGCCATCCAAC
CAAGCAATCACTCGTTTTTTGCACATCACAACCCTCCGTTTCTGTCCACA
GATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG
AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG
GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG
GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGT
ATGGGGAGGGGGGGGGAAGGGAGGGAAGTAGAGAGGGAGAGAGGGACTGT
GGCCTGCATGCTCCCTTCACTTCACTTCCATTCGTTTTCTTGAACCTCGA
CCAAATTCATTGTTTTTCTATCATTACCTTTCTCTCCTCCTGTTTCGTAG
GGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCC
TTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTC
AAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAAT
CGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCA
TTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCC
TCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACC
TTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGA
GGGAGGGAGAGTGAGAGGAAGGCCAATTTTGTCCTTAAAATCGACCTAAA
CCACCCACCCTCCCTCCCTCCCTCCTTCCCTCTTTCCCTTACATTCATCC
TCTAGGACGACGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGC
CTGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCC
GCGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGA
ATGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACG
CGAATGGAGGTGCAGGTGTAGATAATGTTATCTAGTAGAAAAGATATCAA
ATAAAAAAAACGAAAGCGGTGTGACTTAAGTCTTCAAA
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Coding sequence (CDS) from alignment at chr13:1011580..1014317-

>NO13G03400.3 ID=NO13G03400.3|Name=NO13G03400.3|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica)
ATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAGGA
CATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAGCA
GCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGATTCCTCTTCTCCA
CGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGGAGACGGAATGTGCCT
CATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTGTGGCTTTA
TCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAGTGCCTTAT
TCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTCGCCGGCAT
GGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCCTCCCTCCT
CCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGTACACTTAT
GTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCCTCCTTCCC
TTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGTCCTCTTTT
CGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCGCCCTCCGC
CGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTGAGTAGGGG
CAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGAGGGAGGGAGAGTGAGAG
GAAGGCCAATTTTGTCCTTAAAATCGACCTAA
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Synonyms
Publications