NO13G03400.2, NO13G03400.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03400.2
Unique NameNO13G03400.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2467
Alignment locationchr13:1011580..1014317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1011580..1014317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03400.2 vs.
Match: EWM20770.1 (hypothetical protein Naga_100356g3 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 2.500e-15
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 0 
Query:   98 RSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLLSRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWLGREGT--QRNERMMGSQKERKRVAMTRMEVQV 231
            R S +P  P     I   LVLF++   SVV G ++L LR+ L P LL Y+ L    KS + T+DD LS SW+LLQAGL TA AVK   +L  + RGKA+V WL R G   +R E  +   +ER RVAMTRMEV V
Sbjct:  111 RHSLYPCLPPPPTFITRILVLFASCQTSVVTGAIVLLLRQRLAPALLFYSLL---RKSHATTEDDGLSLSWMLLQAGLTTATAVKCNGWLQ-TVRGKALVGWLIRRGVGERRGEGELEGGRER-RVAMTRMEVNV 240
The following BLAST results are available for this feature:
BLAST of NO13G03400.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20770.12.500e-1548.89hypothetical protein Naga_100356g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03400NO13G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03400.2NO13G03400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03400.2.cds1NO13G03400.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03400.2.cds2NO13G03400.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03400.2.cds3NO13G03400.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2467bp
GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGGTAAGAGAGAAG
GATGAGGATGAGGAGGAGAAGGAGGATGAGAAGGAGGGGGAGGAAGAGGA
AAATCCAGAGGGAAAGGAGGAGGGTAGGGTGGGGATGGGACATGGGATGA
ATTGGACCTGGACTATGCCCAGACTAGACCAGTAAAATGTGCCATCCAAC
CAAGCAATCACTCGTTTTTTGCACATCACAACCCTCCGTTTCTGTCCACA
GATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG
AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG
GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG
GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGG
ACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTT
CCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAA
GGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCG
GTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATT
TTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTC
CTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTT
TTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGACGACGACGCACTTT
CCCCCTCATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTG
AAGGGCAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGC
GTGGTTGGGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTC
AAAAGGAGAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAG
ATAATGTTATCTAGTAGAAAAGATATCAAATAAAAAAAACGAAAGCGGTG
TGACTTAAGTCTTCAAA
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protein sequence of NO13G03400.2

>NO13G03400.2-protein ID=NO13G03400.2-protein|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPYSRTIFALDVLMGLV
AGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTYVPVTTNATSSNRSS
SFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALRRALGPTLLLYTFLL
SRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREFLLCSPRGKAVVAWL
GREGTQRNERMMGSQKERKRVAMTRMEVQV*
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mRNA from alignment at chr13:1011580..1014317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica)
GCTGCGGGTTCTGCTGGTGGTGGCCGTGATGGTGGTGGTGCTGCTGCTGC
TGGTGCGGCTGCTGTTGCTGCTGCTGCGGGTGATGGTGATGGTGAAAGGG
CTTACGAGGACTCTTCGTGGCGGCCCTACACGTCGCCTTTTGTTTTCTTC
TTGGAGAGGTGCCCTCGGGAATAGCAGCGACATCGCGCCCCCCTTCCCTC
CCTCCCTTCTCCCCTAGCTCGTGCGATGGGTAAGAAAAGGGGCGGTATTG
TGGCTTTCGGCCAGGAGGGGGTGTCCGAGATGCAGACGTGGAAATGGAGG
GATGGAAGGAGGGATGGGAGGTGGCGAGGGAGGGAGGGGTCTGTCGGTGC
GTTGTCGGCCTTGAGCTTTGTCGATAGGAGGTAGAATGGGAGGCGCTGGA
GGAGGACGAATGCAGATTTGCGGTTTTGGTGCCCGTTTGGCCGGCGGAGA
GAGAGGAAGAGGAAGCAGAGAATCGTCGACTCCCTTCTGCCTTTCGTCCT
GGAGCGCGGGAAGAAGAAGAGGAAGAGGCAGAGGAGACGGGAAGGAGCAG
GGAGGTCCAGAGATCAAGGTACTCTTCGAAAACCTTGAATTCTTCCAGGG
TCTGGGGGCGAAGGTCCTAGGGAAGGAAGGAGGAGGGGAGGAAGGGAGGG
AAGGAGGGGAGGGAGGGTGGCGATGAGGAGAGCTTTGAGGTAGCGAGGCG
GCGGCAGGGGCACGGTGCGTAAAAATGCAGACGTGGGCAGAGGCTTGATG
AATAATATGTACGCGTGATGTTTGCATGTACTCGGACTCGCCGATAAATG
CCTTTCGCACTAGGGTCGTCCGACTAACCCTACCCTTTCCATCGCCCTCT
CTCTGTGTCAGTAAATCTTGACGCCAGCTTTTCCAAGGTAAGCGGACAAC
AGAGCAAGTAGCTATGCATTGTCTGCCTACGCGACATGTGCGCGTGTTCA
CTAAGAGCTTCACGCTGTTACCCTCCCCGTCCCTCTCGGCTTCGGCCTCC
CCCCCTCCCCCTCTCACCTTGACTGCTTGCTGTAATTGGAGGCATCTACG
TATCAGCTCCAAGCGCCGAAAGGATGGGTCGTCTTCTTTTTTGTGCTGTT
GTTTGTGCTTCTGGTGCGTGTCATACATCCTCTGTCGTATGGGTGAAGTG
TTTGGGTCGGGAGTAAGGGAGAAAGAAGAAGAAAGCCAACAGACAGCGAG
GCGCGAGGCGTTTTGGAGAAAGGCCGCGGACTTTGGAATACTTATGATTC
CCACAGTCATCTGTCTCCCTACCACCACAGACACGCAGGCATTGAGATCA
GTATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAG
GACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAG
CAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGGTAAGAGAGAAG
GATGAGGATGAGGAGGAGAAGGAGGATGAGAAGGAGGGGGAGGAAGAGGA
AAATCCAGAGGGAAAGGAGGAGGGTAGGGTGGGGATGGGACATGGGATGA
ATTGGACCTGGACTATGCCCAGACTAGACCAGTAAAATGTGCCATCCAAC
CAAGCAATCACTCGTTTTTTGCACATCACAACCCTCCGTTTCTGTCCACA
GATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGG
AGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAG
GCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGG
GGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGT
ATGGGGAGGGGGGGGGAAGGGAGGGAAGTAGAGAGGGAGAGAGGGACTGT
GGCCTGCATGCTCCCTTCACTTCACTTCCATTCGTTTTCTTGAACCTCGA
CCAAATTCATTGTTTTTCTATCATTACCTTTCTCTCCTCCTGTTTCGTAG
GGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCC
TTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTC
AAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAAT
CGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCA
TTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCC
TCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACC
TTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGTAAGGAGCCAGGA
GGGAGGGAGAGTGAGAGGAAGGCCAATTTTGTCCTTAAAATCGACCTAAA
CCACCCACCCTCCCTCCCTCCCTCCTTCCCTCTTTCCCTTACATTCATCC
TCTAGGACGACGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGC
CTGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCC
GCGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGA
ATGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACG
CGAATGGAGGTGCAGGTGTAGATAATGTTATCTAGTAGAAAAGATATCAA
ATAAAAAAAACGAAAGCGGTGTGACTTAAGTCTTCAAA
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Coding sequence (CDS) from alignment at chr13:1011580..1014317-

>NO13G03400.2 ID=NO13G03400.2|Name=NO13G03400.2|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr13:1011580..1014317- (Nannochloropsis oceanica)
ATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTG
TGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAG
TGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTC
GCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCC
TCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGT
ACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCC
TCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGT
CCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCG
CCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTG
AGTAGGGGCAAGAGCAAGAGCAGGACGGACGACGACGCACTTTCCCCCTC
ATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTGAAGGGCA
GAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGCGTGGTTG
GGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTCAAAAGGA
GAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAG
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Synonyms
Publications