NO13G03080, NO13G03080 (gene) Nannochloropsis oceanica

Overview
NameNO13G03080
Unique NameNO13G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3765
Alignment locationchr13:881895..885659 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 2B gamma subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:881895..885659 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009058biosynthetic process
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0016779nucleotidyltransferase activity
GO:0016779nucleotidyltransferase activity
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR005835NTP_transferase
IPR011004Trimer_LpxA-like
IPR029044Nucleotide-diphossugar_trans
IPR001451Hexapep_transf
Homology
BLAST of NO13G03080 vs. NCBI_GenBank
Match: OWZ22286.1 (Translation initiation factor eIF-2B subunit gamma [Phytophthora megakarya])

HSP 1 Score: 180.3 bits (456), Expect = 1.500e-41
Identity = 122/354 (34.46%), Postives = 176/354 (49.72%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F A+ILA      LYPLT + PK+LLP   +PLL YQL LL  SGF+E +V+T  D    VQ  +  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L ++K+LL+R S+F LH++L D   Y+ +HWVL+L++ K+  +S++ D++P +VR+QF+G EA   +V      T  +   A+LS       P+D  RCFAY+L PS              YC +  +  AY  M+ E+
Sbjct:    3 EFQAIILAGGRGIRLYPLTEETPKALLPANGKPLLWYQLHLLETSGFTEVLVLTVPDLLPSVQDYITREFDGKIHVELCEVTDNTETADALRQVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASITMLLRQETPTKKGEKPRRDKDMT----------------------------------DCIALVQGQRDEENRVVLVSQAVHM-NEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYISSIKADLVPHLVRRQFRGKEALPESVREKA--TSKQELAASLSLSEENHDPEDLVRCFAYVL-PS------------NAYCERADTIPAYRAMDEEV 306          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: XP_002904058.1 (translation initiation factor eIF-2B subunit gamma, putative [Phytophthora infestans T30-4] >EEY54236.1 translation initiation factor eIF-2B subunit gamma, putative [Phytophthora infestans T30-4])

HSP 1 Score: 179.1 bits (453), Expect = 3.300e-41
Identity = 123/359 (34.26%), Postives = 177/359 (49.30%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNRELMTLSR 376
            +F A+ILA      LYPLT + PK+LLP   +PLL YQL LL  SGF+E +V+T  D    +Q  +  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L ++K+LL+R S+F LH++L D   Y  +HWVL+L++ K+   S++ D++P +VR+QF+G EA   +V      T  +   A+LS       P+D  RCFAY+L PS              YC +  +T AY  M+ E+ +  R
Sbjct:    3 EFQAIILAGGRGIRLYPLTEETPKALLPANGKPLLWYQLHLLETSGFTEVLVLTIPDLLPPLQDYLTREFDGKIHVELCEVADNTETADALREVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASVTMLLRQEAPASKAKGEKPRRDKDLT--------------------------------DCIALVEGQRDEENRVVLVSQAVHM-NEDLYVAKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKKYIASIKADLIPHLVRRQFRGKEALPESVRSKA--TSKQELAASLSLSEEKHDPEDLVRCFAYVL-PS------------NAYCERADTTPAYRAMDEEVSSRLR 313          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: XP_024584457.1 (translation initiation factor eif-2b subunit [Plasmopara halstedii] >CEG48088.1 translation initiation factor eif-2b subunit [Plasmopara halstedii])

HSP 1 Score: 178.7 bits (452), Expect = 4.300e-41
Identity = 119/354 (33.62%), Postives = 175/354 (49.44%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F A+ILA      LYPLT + PK+LLP   +PLL YQL+LL  SGF+E +V+T  D    +Q  V  E+ G + V++  V  +  TAD LR + D+IK DF+VL GDLV    LH++ D HR   + +T LL++                                                   D   LV G    E RVV+   A+ +    L ++K+LL+R S+F LH++L D   Y  +HWVL+L++ K+  +S++ D++P +VR+QF+G EA  S V     + +  A  A+LS       P+D  RCFAY+L P+              YC +  +  AY  MN E+
Sbjct:    3 EFQAIILAGGRGIRLYPLTEETPKALLPANGKPLLWYQLNLLETSGFTEVLVLTLPDLVPPIQDYVTREFDGKIHVEICEVTENTETADALREVADRIKRDFIVLAGDLVTDVVLHNMADFHRINDASVTMLLRQEVSTRKTKGEKSRRDKDMT--------------------------------DCFALVEGQRDEENRVVVASQAVHM-NEDLYVAKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKKYISSIKVDLVPHLVRRQFRGKEALPSNVREKAASKQELA--ASLSLSKEKHDPEDLVRCFAYVLPPNA-------------YCERADTIPAYRAMNEEV 308          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: XP_009537286.1 (hypothetical protein PHYSODRAFT_356058 [Phytophthora sojae] >EGZ07720.1 hypothetical protein PHYSODRAFT_356058 [Phytophthora sojae])

HSP 1 Score: 178.3 bits (451), Expect = 5.600e-41
Identity = 124/354 (35.03%), Postives = 175/354 (49.44%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F AVILA      LYPLT + PKSLLP   +PLL YQL LL  SGF+E +V+T  D    +Q  +  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L ++K+LL+R S+F LH++L D   Y+ +HWVL+L++ K+   S++ D++P +VR+QF+G  A     SV    T  +A  A+LS       P+D  RCFAY+L PS              YC +  +  AY  M+ E+
Sbjct:    3 EFQAVILAGGRGIRLYPLTEETPKSLLPANGKPLLWYQLHLLETSGFTEVLVLTVPDLLPPLQDYLTREFDGKIHVELCEVADNTETADALREVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASVTMLLRQEEPARTKAKGEKPRRDKDMT-------------------------------DCIALVEGQRDEENRVVLVSQAVHM-NEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLVPHLVRRQFRGAAALPE--SVRERATSKQALAASLSLSEEKHDPEDLVRCFAYVL-PS------------NAYCERADTIPAYKAMDEEV 309          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: XP_008868900.1 (hypothetical protein H310_05843 [Aphanomyces invadans] >ETW02295.1 hypothetical protein H310_05843 [Aphanomyces invadans])

HSP 1 Score: 176.8 bits (447), Expect = 1.600e-40
Identity = 119/356 (33.43%), Postives = 176/356 (49.44%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFG-TADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPGEQRVVMKVPAI----TLEGS-TLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F AVILA      LYPLT + PK LLP+ N PLL YQL LL  SGFS+ +V+TT +  D++      +Y G + +D+V VE   G TAD LRA+ D+I++DF+V+ GDLV    L +V DLHR   + +T LLK+                                                   D IGLV  + RVV    +I     +EG+  + +  ALL+R     +H++L D  +Y+  HWVL+L+  K+   S++ D++P +VR+QF+GP+A   +V   + + +  A   ++S G      DD  + FAYIL PS              YC +  +  AY  M +E+
Sbjct:    3 EFQAVILAGGSGVRLYPLTEETPKPLLPVNNHPLLYYQLALLEKSGFSDVLVITTTEMKDQICDYTLRQYGGKIGIDVVAVEGDGGETADALRAVADRIRSDFIVVAGDLVTDCVLQNVADLHRINDASVTMLLKQ----------------------------EMVEEPTKGSKSKEKPRRDREMIDCIGLVEADSRVVHIAHSIFANDDMEGNEDVEMPLALLKRRPRINMHTDLYDAHVYIFPHWVLDLLHEKKHIASIKADLIPHLVRRQFRGPQALAESVRGKLQSPQHVANDLSVSCGG--KDEDDVMKVFAYIL-PS------------NAYCERADTKEAYNAMTKEV 315          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: ETK71460.1 (hypothetical protein L915_21296 [Phytophthora parasitica] >ETL24902.1 hypothetical protein L916_21164 [Phytophthora parasitica] >ETL78117.1 hypothetical protein L917_21020 [Phytophthora parasitica] >ETM31379.1 hypothetical protein L914_21035 [Phytophthora parasitica] >ETP29023.1 hypothetical protein F442_21762 [Phytophthora parasitica P10297] >KUF80118.1 Translation initiation factor eIF-2B subunit gamma [Phytophthora nicotianae])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-40
Identity = 121/354 (34.18%), Postives = 173/354 (48.87%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F A+ILA      LYPLT + PK+LLP   +PLL YQL LL  SGF+E +V+T  D    +Q  +  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L + K+LL+R S+F LH++L D   Y  +HWVL+L++ K+   S++ D++P +VR+QF+G EA   +V      T  +   A+LS       P+D  RCFAY+L PS              YC +  +  AY  M+ E+
Sbjct:    3 EFQAIILAGGRGIRLYPLTEETPKALLPANGKPLLWYQLHLLETSGFTEVLVLTIPDLLAPIQDYLTREFDGKIHVELCEVTDNTETADALREVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASVTMLLRQEAPVSKAKGEKPRRDKDMT--------------------------------DCIALVEGQRDEENRVVLVSQAVHM-NEDLYVPKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKKYIASIKADLIPHLVRRQFRGKEALPESVRSKA--TSKQELAASLSLSEEKHDPEDLVRCFAYVL-PS------------NAYCERADTIPAYRAMDEEV 308          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: KUF95385.1 (Avr1b-1 avirulence protein [Phytophthora nicotianae])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-40
Identity = 121/354 (34.18%), Postives = 173/354 (48.87%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F A+ILA      LYPLT + PK+LLP   +PLL YQL LL  SGF+E +V+T  D    +Q  +  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L + K+LL+R S+F LH++L D   Y  +HWVL+L++ K+   S++ D++P +VR+QF+G EA   +V      T  +   A+LS       P+D  RCFAY+L PS              YC +  +  AY  M+ E+
Sbjct:    3 EFQAIILAGGRGIRLYPLTEETPKALLPANGKPLLWYQLHLLETSGFTEVLVLTIPDLLAPIQDYLTREFDGKIHVELCEVTDNTETADALREVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASVTMLLRQEAPVSKAKGEKPRRDKDMT--------------------------------DCIALVEGQRDEENRVVLVSQAVHM-NEDLYVPKSLLKRRSNFVLHTDLYDGHFYFFSHWVLDLLQEKKYIASIKADLIPHLVRRQFRGKEALPESVRSKA--TSKQELAASLSLSEEKHDPEDLVRCFAYVL-PS------------NAYCERADTIPAYRAMDEEV 308          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: CBN79025.1 (eukaryotic translation initiation factor 2B gamma subunit [Ectocarpus siliculosus])

HSP 1 Score: 172.9 bits (437), Expect = 2.300e-39
Identity = 124/402 (30.85%), Postives = 187/402 (46.52%), Query Frame = 0
Query:   24 AVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVE-----ATIAALSA-----GSVYARPDDGP------RCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNRELMTLSR--EVAAWDPPEGYRPKETCVVGEGCAFGEQVNIK 408
            AVILA  D   LYPLT D+P  LLP+LN PLL YQL+LL  +G++E +VV +R     V    +  Y G + +DLV V     TA++LR +                       + +LH +KRSD+T ++K                                                    DY+GL     R+V+K+P + +E   LR+ KALLRR  +  L + L D  +Y+LAHWVL  ++++   TS++ +++P +VR+QF+ P   G  ++  VG+   E     A +A +S+         A P +G       RCFA  L              G  YCS+  +  AY  +NREL+T+    +   W  P+G+RPK++ +VGEGC  G +  +K
Sbjct:    9 AVILACEDGKRLYPLTQDVPAPLLPVLNNPLLHYQLELLEKAGYTEALVVCSRVTEVGV-AKYKETYTGALTLDLVVVNGSLDTAEVLRQVAXXXXXXXXXXXXXXXXXXXXXXLAELHVSKRSDVTMVVKE-----------------------------EAPVKDAKGRKTVRPKRDEEDIDYVGLTQ-SGRLVIKLPKLFVE-EALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNPTTGGEPLTKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVNEVRCFALTL------------RHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLK 366          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: OQR89211.1 (translation initiation factor eIF-2B subunit gamma [Thraustotheca clavata])

HSP 1 Score: 170.6 bits (431), Expect = 1.200e-38
Identity = 110/351 (31.34%), Postives = 177/351 (50.43%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVE-NHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNREL 371
            +F AVILA      LYPLT D PK LL +  +PL+ YQL LL  SGFS+ ++VT +D  D+++  V ++Y G ++V++V VE +   TAD LR + DKI++DF+VL GDL+    LH+V DLHR   + +T LLK+                                                   D IG+V  E RVV  V     E   L + +ALL+R     +H++L D  +Y+ AHW+L+L+  K+   S++ D++P +VR+QF+G +A   +V   + + +  A + ++++       +D  + +A++L P+              YC +  +  A+  M RE+
Sbjct:    3 EFQAVILAGGSGVRLYPLTEDTPKPLLLVNGKPLIYYQLALLENSGFSDVLLVTAKDMIDQLKTYVLSQYNGKMSVEIVAVEGDATETADALRCVADKIRSDFIVLAGDLITDCVLHNVADLHRINDASVTMLLKQEVQETPAKGVKSKEKPRRDEEMT----------------------------DCIGMVDAENRVVF-VSHSVYENDDLEVPRALLKRRPRINMHTDLYDAHVYIFAHWILDLLAEKKHIASIKADLIPHLVRRQFRGRQALPESVRSRLVSKQHLAQMLSVNS---MKDDEDLLKVYAHVLPPNA-------------YCERADTKEAFNAMEREV 308          
BLAST of NO13G03080 vs. NCBI_GenBank
Match: POM62312.1 (Translation initiation factor eIF-2B subunit gamma, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 170.2 bits (430), Expect = 1.500e-38
Identity = 120/347 (34.58%), Postives = 170/347 (48.99%), Query Frame = 0
Query:   21 QFMAVILADVDAHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDYIGLVPG----EQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAY 364
            +F AVILA      LYPLT + PK+LL    +PLL YQL LL  SGF+E +V+T  D    VQ  V  E+ G + V+L  V ++  TAD LR + DKIK DF+VL GDLV    LH+V D HR   + +T LL++                                                   D I LV G    E RVV+   A+ +    L ++K+LL+R S+F LH++L D   Y+ +HWVL+L++ K+   S++ D++P +VR+QF+G +A   +V      T  +   A+LS       P+D  RCFAY+L PS              YC +  +  AY
Sbjct:    3 EFQAVILAGGRGIRLYPLTEETPKALLLANGKPLLWYQLHLLETSGFTEVLVLTVPDLLAPVQDYVTREFDGKIHVELCEVTDNTETADALREVADKIKRDFIVLAGDLVTDVVLHNVADFHRINDASVTMLLRQETPVKKGEKPRRDKDMT----------------------------------DCIALVQGQRDEENRVVLVSQAVHM-NEDLYVAKSLLKRRSNFVLHTDLYDGHFYIFSHWVLDLLQEKKYIASIKADLVPHLVRRQFRGKDALPESVREKA--TSKQELAASLSLSEENHDPEDLVRCFAYVL-PS------------NAYCERADTIPAY 299          
The following BLAST results are available for this feature:
BLAST of NO13G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ22286.11.500e-4134.46Translation initiation factor eIF-2B subunit gamma... [more]
XP_002904058.13.300e-4134.26translation initiation factor eIF-2B subunit gamma... [more]
XP_024584457.14.300e-4133.62translation initiation factor eif-2b subunit [Plas... [more]
XP_009537286.15.600e-4135.03hypothetical protein PHYSODRAFT_356058 [Phytophtho... [more]
XP_008868900.11.600e-4033.43hypothetical protein H310_05843 [Aphanomyces invad... [more]
ETK71460.12.800e-4034.18hypothetical protein L915_21296 [Phytophthora para... [more]
KUF95385.12.800e-4034.18Avr1b-1 avirulence protein [Phytophthora nicotiana... [more]
CBN79025.12.300e-3930.85eukaryotic translation initiation factor 2B gamma ... [more]
OQR89211.11.200e-3831.34translation initiation factor eIF-2B subunit gamma... [more]
POM62312.11.500e-3834.58Translation initiation factor eIF-2B subunit gamma... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03080.2NO13G03080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G03080.1NO13G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|249249gene_9000Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03080.2NO13G03080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G03080.1NO13G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03080 ID=NO13G03080|Name=NO13G03080|organism=Nannochloropsis oceanica|type=gene|length=3765bp
TGCACTTTGTCCCAATTGACTTCCTCACTGATGCTTGCCTTTCCTTGCTC
ATTATCACTCTCTATACGTTTATTCCGCGCAACCAGCACCCTTGGATACG
CGCAGCAAGCGACCTGGCAACAAACATGCACGCACTCTCACGGGTTATCA
TGGATCATGGCCGGCGCAAGAACCGCATCCCCTCAGGCTTTCAACCTCCT
CTCTTTATTGCTTCCTTCATATGAATAATACAGGCAGGGGCGATGGCCAA
CACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGGCATCCGAC
CACAATTTATGgtgcgtaacaagcatggggacaaaatgttcaaaggaaga
ggactgtttgtgtgtaggaaagctcgccgctcaccctcctcccctccctc
cctccctcccaccctccctccctcatgccccctctctcccgccctccctc
cccccttcgtcatctgcacctgtagGCCGTCATTCTCGCCGACGTGGACG
CCCATGCCCTCTATCCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCG
CTGCTGAATCGGCCTTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAG
TGgtaaggaagggagagaggaagagagggagggaggaagaggataaaagc
ttgaatgccttactggatacaatcccattagcgaaggagcagaagaatgg
agtgcatgctgtccactgtccctctcctcctaccctcctgcattcctttc
aacccttttctctcctccatcccctccttcccccccctcaagGTTTCAGC
GAGTGCGTGGTGGTGACCACCCGCGATGCCCATGATCGTGTCCAGATATT
GGTGCGAAACGAGTACCGgtgcgtgcgtgattaggagggagagagggagg
ggagggagggaagggattcaaactttccagaggcacacttcctcagactt
actcccaccctccctccctcccttcttccccacttgcttccagAGGTGAC
GTAGCTGTGGACCTGGTGTGTGTGGAGAATCATTTCGGCACTGCGGATAT
GCTTAGAGCCATTAAAGACAAGATAAAAACGgtgagcgagggaggaaggg
agagagggagggaggaagggagagagggagggagggagagagacatgtac
acagcacatcaccacttaccttcctcttcttttgccttctcaaccttcct
cccatttcccgcttgcttttctacctcctccccgctttgagatttttctc
atcctcacttaccctcctccatctccctcccttcccccctccctccctcc
ctttgtttccttgcctagGATTTTTTGGTCTTGACGGGCGACCTGGTTTT
GGGGCGGCACTTGCATGATGTCATCGACTTGCACAGgtaggtgggtaggt
aggtagggagggggggagggaagtaatcgaggagttgtaaattgctcatt
cattcactcgcgcttcctccctctcgccctccctcccgccctccctccgt
cctacagAGCTAAGCGGTCAGACTTAACCTTCCTCCTGAAGCGTTTACCT
CCTCCGTCTCCCGCCGTAGGGGGAAAGCGAGGAGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGGAAGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGT
CCATCGTTGGGGCAGCGGCGGCGATCgtacgtaggcagggagggagggaa
ggagggagggtgggaggggtagtagcgatatgtcaggggaccatgctgac
aagctcccctcgccccttcccccctcccccctcccccctccctccctccc
tcccttcctccctccctccctcccttcctgtgccagGAGGAAGAGGACGA
GGAGTTCGATTACATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGA
AAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGgtg
agggagggagggagggagggagggagggagggagggagggagggaggatc
aattcttccccctttttcctacccctcacacgtcgactgatctccccctc
cctccctcgcttcccccctctctctcttcctccttcctttagGCGCTCCT
CCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCC
TCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGAC
TTCACCAGgtccatctctctgccccctccctcctccccgccctacttccc
tccctctccactctaatgtccgtcagcgattccaaggctgtgatgccttt
catatgaccaacccccctccctccctccctccctccctccctacctcctt
ccctcccttctcgcccccagCCTGGAAGAAGACGTCCTTCCCTTCATTGT
ACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCC
CTGTGGGCAACACGGAGGTGGAGgtgagagggcgggtggaagggagggag
ggaaggagggaaggagggacggaaggctcatgtatgcagccattcaccct
atactatctctctctgtccctcccgccctctcaccctccctccccccatt
ctatagGCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCC
TGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTG
ACGTCCACTACGGCCTACATGCTGATGAATCGGGAGgtgagggagggagg
gagggacgaagggagcaaggaagacgatgggtgtctatggacaccaaaat
tctgacgtcggtgtcaaattttaacctcttagaattatgtatgcttaccc
ctccctccctccttccctccctctctcactgccatctcctagCTCATGAC
CCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCA
AGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGgtaggg
agggagggagggagggagggagggagggagggagggagggagggagaggg
cacttcagttttacgatggcgatgatacgtatttgtgctcgcccttcgtc
tctttctcccttcctccctacagatttatatcaaggccacttatacagac
aacaaccgccatttcggcgctagatctcacatacatgattttctccgtcc
ctccctccctccctcctccctcctccctcctcccttcccctagGTCAACA
TCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAG
ATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTAC
TCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGgtacgcgctc
cccccccccctccccctcttcctcttttcctcgaccctgtcctctgtata
tcaaataatatgtcccgtcttcatttgagggatagctgcacactttctga
atgccgcgttcttatcgtctctgagcccctgtcatccttccctatcgcct
tccctccctccaagGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCG
TATATGACTGTGCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAG
AGAATGAGGAACAGGAATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAA
GAACGAATTATAAGT
back to top

protein sequence of NO13G03080.2

>NO13G03080.2-protein ID=NO13G03080.2-protein|Name=NO13G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRLPPP
SPAVGGKRGEGGGGGGGGGKGGKKGGVTGGASIVGAAAAIEEEDEEFDYI
GLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLL
AHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVE
ATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTS
TTAYMLMNRELMTLSREVAAWDPPEGYRPKETCVVGEGCAFGEQVNIKAS
VLGANCKIGTRVKIHQCVLMDNVTVSDGVTLTNTVVCPHARIQEFCSLQD
SFVGSYMTVPAKTKLKNGELMRE*
back to top

protein sequence of NO13G03080.1

>NO13G03080.1-protein ID=NO13G03080.1-protein|Name=NO13G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MANTAGAGGLSSTLRGGIRPQFMAVILADVDAHALYPLTNDLPKSLLPLL
NRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVC
VENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLT
FLLKRLPPPSPAVGGKRGEGGGGGGGGGKGGKKGGVTGGASIVGAAAAIE
EEDEEFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSN
LIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVS
VPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGG
GMYCSKLTSTTAYMLMNRELMTLSREVAAWDPPEGYRPKETCVVGEGCAF
GEQVNIKASVLGANCKIGTRVKIHQCVLMDNVTVSDGVTLTNTVVCPHAR
IQEFCSLQDSFVGSYMTVPAKTKLKNGELMRE*
back to top
Synonyms
Publications