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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:881895..885659 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03080.1 vs.
Match: XP_005837426.1 (translation initiation factor 2B, gamma subunit [Guillardia theta CCMP2712]; EKX50446.1 translation initiation factor 2B, gamma subunit [Guillardia theta CCMP2712]) HSP 1 Score: 210.7 bits (535), Expect = 1.000e-50 Identity = 143/482 (29.67%), Postives = 224/482 (46.47%), Query Frame = 0
Query: 21 QFMAVILADVD---AHALYPLTNDLPKSLLPLLNRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVCVENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRLPPPSPAV---GGKRGEGGGGGGGGGKGGKKGGVTGGASIVGAAAAIEEEDEEFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGSVYARPDDGP-RCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNRELMTLSREVAAWDPPEGYRPK-------------ETCVVGEGCAFGEQVNIKASVLGANCKIGTRVKIHQCVLMDNVTVSDGVTLTNTVVCPHARIQEFCSLQDSFVGSYMTVPAKTKLKNGELMRE 483
+ AV+L D D LYPL PK LLP+ NRPL+ YQL LL SGF + +V TT A D + + Y+G + VD+V V+ + TAD+LRA+K+KI DF+V++GDLV ++H + D+HR + T LL+ PP V G K +G GG D++ L R++ A +E L L + +LR + + + ++D Y+ + W+L+L+E + + S++ +++P++++ QF G V V + + R P RC A I D G YCS+ S Y MN E+ W+P + K CVVGEG A GE+ +IK SV+G +C IG+ VKI C+L +VT+ D LT V+ + I+ C++ + + + A+++ KN L+ +
Sbjct: 2 ELQAVVLGDHDDGGGTRLYPLNEVTPKCLLPVANRPLVMYQLALLERSGFKDVIVATTPKARDELVNFMDQGYKGSIKVDIVEVDENCETADVLRALKEKITKDFVVVSGDLVTDVYVHHLADVHRINDATCTVLLR---PPKQEVKQPGSKPAKGEGG-------------------------------NVDFVALDAKRTRLLCLESAADVE-DKLTLPRKVLRSYPNVSITNKILDAHFYIFSRWILDLLEEETEIRSIKTELVPYLIKSQFSSKSVPGQPVLVSEEEEDEDEKADESLVDDDAERSKFVPIRCHALIYD--------------GGYCSRADSLHTYKEMNFEVPRHQGHSVPWEPNSSFPDKTDEEKRAFAKKVGSDCVVGEGFAIGEKSSIKKSVIGKHCSIGSNVKIVNCILHSHVTIQDNCNLTGCVISNNVYIENDCTVTNCQIADKYQMEAESQHKNETLLAD 434
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03080.1 ID=NO13G03080.1|Name=NO13G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
TGCACTTTGTCCCAATTGACTTCCTCACTGATGCTTGCCTTTCCTTGCTC
ATTATCACTCTCTATACGTTTATTCCGCGCAACCAGCACCCTTGGATACG
CGCAGCAAGCGACCTGGCAACAAACATGCACGCACTCTCACGGGTTATCA
TGGATCATGGCCGGCGCAAGAACCGCATCCCCTCAGGCTTTCAACCTCCT
CTCTTTATTGCTTCCTTCATATGAATAATACAGGCAGGGGCGATGGCCAA
CACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGGCATCCGAC
CACAATTTATGGCCGTCATTCTCGCCGACGTGGACGCCCATGCCCTCTAT
CCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCGCTGCTGAATCGGCC
TTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAGTGGTTTCAGCGAGT
GCGTGGTGGTGACCACCCGCGATGCCCATGATCGTGTCCAGATATTGGTG
CGAAACGAGTACCGAGGTGACGTAGCTGTGGACCTGGTGTGTGTGGAGAA
TCATTTCGGCACTGCGGATATGCTTAGAGCCATTAAAGACAAGATAAAAA
CGGATTTTTTGGTCTTGACGGGCGACCTGGTTTTGGGGCGGCACTTGCAT
GATGTCATCGACTTGCACAGAGCTAAGCGGTCAGACTTAACCTTCCTCCT
GAAGCGTTTACCTCCTCCGTCTCCCGCCGTAGGGGGAAAGCGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGGAAGGGGGGAAAGAAGGGAGGGGTG
ACAGGAGGAGCGTCCATCGTTGGGGCAGCGGCGGCGATCGAGGAAGAGGA
CGAGGAGTTCGATTACATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGA
TGAAAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAG
GCGCTCCTCCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGA
CACGCGCCTCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACA
AGGAAGACTTCACCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGTACGC
CAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTGT
GGGCAACACGGAGGTGGAGGCCACAATTGCCGCCCTTTCCGCTGGCTCAG
TCTACGCACGTCCTGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGAC
CCTTCTACAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTA
CTGCTCGAAGCTGACGTCCACTACGGCCTACATGCTGATGAATCGGGAGC
TCATGACCCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATAC
CGGCCCAAGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCA
GGTCAACATCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGC
GCGTTAAGATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGAC
GGCGTTACTCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGGA
ATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGACTGTGCCAG
CCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGAGGAACAGGA
ATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAAGAACGAATTATAAGT back to topprotein sequence of NO13G03080.1 >NO13G03080.1-protein ID=NO13G03080.1-protein|Name=NO13G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MANTAGAGGLSSTLRGGIRPQFMAVILADVDAHALYPLTNDLPKSLLPLL
NRPLLQYQLDLLHASGFSECVVVTTRDAHDRVQILVRNEYRGDVAVDLVC
VENHFGTADMLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLT
FLLKRLPPPSPAVGGKRGEGGGGGGGGGKGGKKGGVTGGASIVGAAAAIE
EEDEEFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSN
LIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVS
VPVGNTEVEATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGG
GMYCSKLTSTTAYMLMNRELMTLSREVAAWDPPEGYRPKETCVVGEGCAF
GEQVNIKASVLGANCKIGTRVKIHQCVLMDNVTVSDGVTLTNTVVCPHAR
IQEFCSLQDSFVGSYMTVPAKTKLKNGELMRE* back to topmRNA from alignment at chr13:881895..885659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03080.1 ID=NO13G03080.1|Name=NO13G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=3765bp|location=Sequence derived from alignment at chr13:881895..885659- (Nannochloropsis oceanica)
TGCACTTTGTCCCAATTGACTTCCTCACTGATGCTTGCCTTTCCTTGCTC
ATTATCACTCTCTATACGTTTATTCCGCGCAACCAGCACCCTTGGATACG
CGCAGCAAGCGACCTGGCAACAAACATGCACGCACTCTCACGGGTTATCA
TGGATCATGGCCGGCGCAAGAACCGCATCCCCTCAGGCTTTCAACCTCCT
CTCTTTATTGCTTCCTTCATATGAATAATACAGGCAGGGGCGATGGCCAA
CACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGGCATCCGAC
CACAATTTATGGTGCGTAACAAGCATGGGGACAAAATGTTCAAAGGAAGA
GGACTGTTTGTGTGTAGGAAAGCTCGCCGCTCACCCTCCTCCCCTCCCTC
CCTCCCTCCCACCCTCCCTCCCTCATGCCCCCTCTCTCCCGCCCTCCCTC
CCCCCTTCGTCATCTGCACCTGTAGGCCGTCATTCTCGCCGACGTGGACG
CCCATGCCCTCTATCCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCG
CTGCTGAATCGGCCTTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAG
TGGTAAGGAAGGGAGAGAGGAAGAGAGGGAGGGAGGAAGAGGATAAAAGC
TTGAATGCCTTACTGGATACAATCCCATTAGCGAAGGAGCAGAAGAATGG
AGTGCATGCTGTCCACTGTCCCTCTCCTCCTACCCTCCTGCATTCCTTTC
AACCCTTTTCTCTCCTCCATCCCCTCCTTCCCCCCCCTCAAGGTTTCAGC
GAGTGCGTGGTGGTGACCACCCGCGATGCCCATGATCGTGTCCAGATATT
GGTGCGAAACGAGTACCGGTGCGTGCGTGATTAGGAGGGAGAGAGGGAGG
GGAGGGAGGGAAGGGATTCAAACTTTCCAGAGGCACACTTCCTCAGACTT
ACTCCCACCCTCCCTCCCTCCCTTCTTCCCCACTTGCTTCCAGAGGTGAC
GTAGCTGTGGACCTGGTGTGTGTGGAGAATCATTTCGGCACTGCGGATAT
GCTTAGAGCCATTAAAGACAAGATAAAAACGGTGAGCGAGGGAGGAAGGG
AGAGAGGGAGGGAGGAAGGGAGAGAGGGAGGGAGGGAGAGAGACATGTAC
ACAGCACATCACCACTTACCTTCCTCTTCTTTTGCCTTCTCAACCTTCCT
CCCATTTCCCGCTTGCTTTTCTACCTCCTCCCCGCTTTGAGATTTTTCTC
ATCCTCACTTACCCTCCTCCATCTCCCTCCCTTCCCCCCTCCCTCCCTCC
CTTTGTTTCCTTGCCTAGGATTTTTTGGTCTTGACGGGCGACCTGGTTTT
GGGGCGGCACTTGCATGATGTCATCGACTTGCACAGGTAGGTGGGTAGGT
AGGTAGGGAGGGGGGGAGGGAAGTAATCGAGGAGTTGTAAATTGCTCATT
CATTCACTCGCGCTTCCTCCCTCTCGCCCTCCCTCCCGCCCTCCCTCCGT
CCTACAGAGCTAAGCGGTCAGACTTAACCTTCCTCCTGAAGCGTTTACCT
CCTCCGTCTCCCGCCGTAGGGGGAAAGCGAGGAGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGGAAGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGT
CCATCGTTGGGGCAGCGGCGGCGATCGTACGTAGGCAGGGAGGGAGGGAA
GGAGGGAGGGTGGGAGGGGTAGTAGCGATATGTCAGGGGACCATGCTGAC
AAGCTCCCCTCGCCCCTTCCCCCCTCCCCCCTCCCCCCTCCCTCCCTCCC
TCCCTTCCTCCCTCCCTCCCTCCCTTCCTGTGCCAGGAGGAAGAGGACGA
GGAGTTCGATTACATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGA
AAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGGTG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATC
AATTCTTCCCCCTTTTTCCTACCCCTCACACGTCGACTGATCTCCCCCTC
CCTCCCTCGCTTCCCCCCTCTCTCTCTTCCTCCTTCCTTTAGGCGCTCCT
CCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCC
TCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGAC
TTCACCAGGTCCATCTCTCTGCCCCCTCCCTCCTCCCCGCCCTACTTCCC
TCCCTCTCCACTCTAATGTCCGTCAGCGATTCCAAGGCTGTGATGCCTTT
CATATGACCAACCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCTT
CCCTCCCTTCTCGCCCCCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGT
ACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCC
CTGTGGGCAACACGGAGGTGGAGGTGAGAGGGCGGGTGGAAGGGAGGGAG
GGAAGGAGGGAAGGAGGGACGGAAGGCTCATGTATGCAGCCATTCACCCT
ATACTATCTCTCTCTGTCCCTCCCGCCCTCTCACCCTCCCTCCCCCCATT
CTATAGGCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCC
TGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTG
ACGTCCACTACGGCCTACATGCTGATGAATCGGGAGGTGAGGGAGGGAGG
GAGGGACGAAGGGAGCAAGGAAGACGATGGGTGTCTATGGACACCAAAAT
TCTGACGTCGGTGTCAAATTTTAACCTCTTAGAATTATGTATGCTTACCC
CTCCCTCCCTCCTTCCCTCCCTCTCTCACTGCCATCTCCTAGCTCATGAC
CCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCA
AGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGG
CACTTCAGTTTTACGATGGCGATGATACGTATTTGTGCTCGCCCTTCGTC
TCTTTCTCCCTTCCTCCCTACAGATTTATATCAAGGCCACTTATACAGAC
AACAACCGCCATTTCGGCGCTAGATCTCACATACATGATTTTCTCCGTCC
CTCCCTCCCTCCCTCCTCCCTCCTCCCTCCTCCCTTCCCCTAGGTCAACA
TCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAG
ATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTAC
TCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTC
CCCCCCCCCCTCCCCCTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATA
TCAAATAATATGTCCCGTCTTCATTTGAGGGATAGCTGCACACTTTCTGA
ATGCCGCGTTCTTATCGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCT
TCCCTCCCTCCAAGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCG
TATATGACTGTGCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAG
AGAATGAGGAACAGGAATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAA
GAACGAATTATAAGT back to topCoding sequence (CDS) from alignment at chr13:881895..885659- >NO13G03080.1 ID=NO13G03080.1|Name=NO13G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr13:881895..885659- (Nannochloropsis oceanica)
ATGGCCAACACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGG
CATCCGACCACAATTTATGGCCGTCATTCTCGCCGACGTGGACGCCCATG
CCCTCTATCCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCGCTGCTG
AATCGGCCTTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAGTGGTTT
CAGCGAGTGCGTGGTGGTGACCACCCGCGATGCCCATGATCGTGTCCAGA
TATTGGTGCGAAACGAGTACCGAGGTGACGTAGCTGTGGACCTGGTGTGT
GTGGAGAATCATTTCGGCACTGCGGATATGCTTAGAGCCATTAAAGACAA
GATAAAAACGGATTTTTTGGTCTTGACGGGCGACCTGGTTTTGGGGCGGC
ACTTGCATGATGTCATCGACTTGCACAGAGCTAAGCGGTCAGACTTAACC
TTCCTCCTGAAGCGTTTACCTCCTCCGTCTCCCGCCGTAGGGGGAAAGCG
AGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAGGGGGGAAAGAAGG
GAGGGGTGACAGGAGGAGCGTCCATCGTTGGGGCAGCGGCGGCGATCGAG
GAAGAGGACGAGGAGTTCGATTACATAGGCCTTGTGCCGGGGGAGCAGAG
GGTGGTGATGAAAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGT
TATCCAAGGCGCTCCTCCGACGCGTCTCGTCCTTCCAGCTCCATTCCAAC
CTCATCGACACGCGCCTCTACCTCCTTGCACACTGGGTACTTGAGCTCAT
CGAGAACAAGGAAGACTTCACCAGCCTGGAAGAAGACGTCCTTCCCTTCA
TTGTACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCC
GTCCCTGTGGGCAACACGGAGGTGGAGGCCACAATTGCCGCCCTTTCCGC
TGGCTCAGTCTACGCACGTCCTGATGACGGTCCTCGGTGTTTCGCCTACA
TTCTCGACCCTTCTACAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GGCATGTACTGCTCGAAGCTGACGTCCACTACGGCCTACATGCTGATGAA
TCGGGAGCTCATGACCCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGG
AAGGATACCGGCCCAAGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTT
GGCGAGCAGGTCAACATCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGAT
CGGCACGCGCGTTAAGATTCACCAGTGCGTACTCATGGACAATGTGACCG
TGTCCGACGGCGTTACTCTTACTAATACTGTGGTCTGTCCCCATGCCCGG
ATCCAGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGAC
TGTGCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGA back to top
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