NO13G03080.2, NO13G03080.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03080.2
Unique NameNO13G03080.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1939
Alignment locationchr13:881895..885659 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:881895..885659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03080.2 vs.
Match: CBN79025.1 (eukaryotic translation initiation factor 2B gamma subunit [Ectocarpus siliculosus])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 90/255 (35.29%), Postives = 143/255 (56.08%), Query Frame = 0 
Query:   91 EEEDEEFDYIGLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEAT-----IAALSA-----GSVYARPDDGP------RCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNRELMTLSR--EVAAWDPPEGYRPKETCVVGEGCAFGEQVNIKASVLGANCKIGTRVKIHQCVLMDNVTVSD 328
            + ++E+ DY+GL     R+V+K+P + +E   LR+ KALLRR  +  L + L D  +Y+LAHWVL  ++++   TS++ +++P +VR+QF+ P   G  ++  VG+   EA      +A +S+         A P +G       RCFA  L              G  YCS+  +  AY  +NREL+T+    +   W  P+G+RPK++ +VGEGC  G +  +K SV+G  CKIG + KI+ C++MD VT+ D
Sbjct:  155 KRDEEDIDYVGLTQSG-RLVIKLPKLFVE-EALRIQKALLRRHETVTLSTTLQDVSVYVLAHWVLGFLDDQRAITSVQNELVPALVRRQFRNPTTGGEPLTKRVGSVAGEALRGDAMVARMSSWRPSPDGDTADPGEGTPGVNEVRCFALTL------------RHGEAYCSQAKTLAAYCTINRELLTMREFSDKCPWSMPDGFRPKDSTLVGEGCHLGPKGTLKFSVIGQACKIGEKAKINNCIIMDGVTIGD 395
The following BLAST results are available for this feature:
BLAST of NO13G03080.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79025.11.100e-3335.29eukaryotic translation initiation factor 2B gamma ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03080NO13G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03080.2NO13G03080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03080.2.cds1NO13G03080.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds2NO13G03080.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds3NO13G03080.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds4NO13G03080.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds5NO13G03080.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds6NO13G03080.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds7NO13G03080.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds8NO13G03080.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds9NO13G03080.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03080.2.cds10NO13G03080.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03080.2 ID=NO13G03080.2|Name=NO13G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp
TGCACTTTGTCCCAATTGACTTCCTCACTGATGCTTGCCTTTCCTTGCTC
ATTATCACTCTCTATACGTTTATTCCGCGCAACCAGCACCCTTGGATACG
CGCAGCAAGCGACCTGGCAACAAACATGCACGCACTCTCACGGGTTATCA
TGGATCATGGCCGGCGCAAGAACCGCATCCCCTCAGGCTTTCAACCTCCT
CTCTTTATTGCTTCCTTCATATGAATAATACAGGCAGGGGCGATGGCCAA
CACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGGCATCCGAC
CACAATTTATGGCCGTCATTCTCGCCGACGTGGACGCCCATGCCCTCTAT
CCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCGCTGCTGAATCGGCC
TTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAGTGGTAAGGAAGGGA
GAGAGGAAGAGAGGGAGGGAGGAAGAGGATAAAAGCTTGAATGCCTTACT
GGATACAATCCCATTAGCGAAGGAGCAGAAGAATGGAGTGCATGCTGTCC
ACTGTCCCTCTCCTCCTACCCTCCTGCATTCCTTTCAACCCTTTTCTCTC
CTCCATCCCCTCCTTCCCCCCCCTCAAGGTTTCAGCGAGTGCGTGGTGGT
GACCACCCGCGATGCCCATGATCGTGTCCAGATATTGGTGCGAAACGAGT
ACCGAGGTGACGTAGCTGTGGACCTGGTGTGTGTGGAGAATCATTTCGGC
ACTGCGGATATGCTTAGAGCCATTAAAGACAAGATAAAAACGGATTTTTT
GGTCTTGACGGGCGACCTGGTTTTGGGGCGGCACTTGCATGATGTCATCG
ACTTGCACAGAGCTAAGCGGTCAGACTTAACCTTCCTCCTGAAGCGTTTA
CCTCCTCCGTCTCCCGCCGTAGGGGGAAAGCGAGGAGAAGGAGGAGGAGG
AGGAGGAGGAGGAGGGAAGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAG
CGTCCATCGTTGGGGCAGCGGCGGCGATCGAGGAAGAGGACGAGGAGTTC
GATTACATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGAAAGTCCC
CGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGGCGCTCCTCC
GACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTC
TACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTT
CACCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGTACGCCAGCAATTCA
AAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACACG
GAGGTGGAGGCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACG
TCCTGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAG
AGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAG
CTGACGTCCACTACGGCCTACATGCTGATGAATCGGGAGCTCATGACCCT
CTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGG
AAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTCAACATC
AAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGAT
TCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTACTC
TTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGGAATTTTGCTCG
CTCCAAGACTCCTTCGTAGGCTCGTATATGACTGTGCCAGCCAAGACCAA
ACTTAAGAATGGTGAGCTGATGAGAGAATGAGGAACAGGAATCATTGGAA
AAGGAGATAGAAGAAAAGAGGGAAGAACGAATTATAAGT
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protein sequence of NO13G03080.2

>NO13G03080.2-protein ID=NO13G03080.2-protein|Name=NO13G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLRAIKDKIKTDFLVLTGDLVLGRHLHDVIDLHRAKRSDLTFLLKRLPPP
SPAVGGKRGEGGGGGGGGGKGGKKGGVTGGASIVGAAAAIEEEDEEFDYI
GLVPGEQRVVMKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLL
AHWVLELIENKEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVE
ATIAALSAGSVYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTS
TTAYMLMNRELMTLSREVAAWDPPEGYRPKETCVVGEGCAFGEQVNIKAS
VLGANCKIGTRVKIHQCVLMDNVTVSDGVTLTNTVVCPHARIQEFCSLQD
SFVGSYMTVPAKTKLKNGELMRE*
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mRNA from alignment at chr13:881895..885659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03080.2 ID=NO13G03080.2|Name=NO13G03080.2|organism=Nannochloropsis oceanica|type=mRNA|length=3765bp|location=Sequence derived from alignment at chr13:881895..885659- (Nannochloropsis oceanica)
TGCACTTTGTCCCAATTGACTTCCTCACTGATGCTTGCCTTTCCTTGCTC
ATTATCACTCTCTATACGTTTATTCCGCGCAACCAGCACCCTTGGATACG
CGCAGCAAGCGACCTGGCAACAAACATGCACGCACTCTCACGGGTTATCA
TGGATCATGGCCGGCGCAAGAACCGCATCCCCTCAGGCTTTCAACCTCCT
CTCTTTATTGCTTCCTTCATATGAATAATACAGGCAGGGGCGATGGCCAA
CACGGCCGGTGCCGGAGGCCTAAGCAGCACGCTGCGGGGCGGCATCCGAC
CACAATTTATGGTGCGTAACAAGCATGGGGACAAAATGTTCAAAGGAAGA
GGACTGTTTGTGTGTAGGAAAGCTCGCCGCTCACCCTCCTCCCCTCCCTC
CCTCCCTCCCACCCTCCCTCCCTCATGCCCCCTCTCTCCCGCCCTCCCTC
CCCCCTTCGTCATCTGCACCTGTAGGCCGTCATTCTCGCCGACGTGGACG
CCCATGCCCTCTATCCGCTCACGAACGACTTGCCCAAATCCTTGCTTCCG
CTGCTGAATCGGCCTTTGTTGCAATATCAGCTGGACTTGCTGCACGCGAG
TGGTAAGGAAGGGAGAGAGGAAGAGAGGGAGGGAGGAAGAGGATAAAAGC
TTGAATGCCTTACTGGATACAATCCCATTAGCGAAGGAGCAGAAGAATGG
AGTGCATGCTGTCCACTGTCCCTCTCCTCCTACCCTCCTGCATTCCTTTC
AACCCTTTTCTCTCCTCCATCCCCTCCTTCCCCCCCCTCAAGGTTTCAGC
GAGTGCGTGGTGGTGACCACCCGCGATGCCCATGATCGTGTCCAGATATT
GGTGCGAAACGAGTACCGGTGCGTGCGTGATTAGGAGGGAGAGAGGGAGG
GGAGGGAGGGAAGGGATTCAAACTTTCCAGAGGCACACTTCCTCAGACTT
ACTCCCACCCTCCCTCCCTCCCTTCTTCCCCACTTGCTTCCAGAGGTGAC
GTAGCTGTGGACCTGGTGTGTGTGGAGAATCATTTCGGCACTGCGGATAT
GCTTAGAGCCATTAAAGACAAGATAAAAACGGTGAGCGAGGGAGGAAGGG
AGAGAGGGAGGGAGGAAGGGAGAGAGGGAGGGAGGGAGAGAGACATGTAC
ACAGCACATCACCACTTACCTTCCTCTTCTTTTGCCTTCTCAACCTTCCT
CCCATTTCCCGCTTGCTTTTCTACCTCCTCCCCGCTTTGAGATTTTTCTC
ATCCTCACTTACCCTCCTCCATCTCCCTCCCTTCCCCCCTCCCTCCCTCC
CTTTGTTTCCTTGCCTAGGATTTTTTGGTCTTGACGGGCGACCTGGTTTT
GGGGCGGCACTTGCATGATGTCATCGACTTGCACAGGTAGGTGGGTAGGT
AGGTAGGGAGGGGGGGAGGGAAGTAATCGAGGAGTTGTAAATTGCTCATT
CATTCACTCGCGCTTCCTCCCTCTCGCCCTCCCTCCCGCCCTCCCTCCGT
CCTACAGAGCTAAGCGGTCAGACTTAACCTTCCTCCTGAAGCGTTTACCT
CCTCCGTCTCCCGCCGTAGGGGGAAAGCGAGGAGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGGAAGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGT
CCATCGTTGGGGCAGCGGCGGCGATCGTACGTAGGCAGGGAGGGAGGGAA
GGAGGGAGGGTGGGAGGGGTAGTAGCGATATGTCAGGGGACCATGCTGAC
AAGCTCCCCTCGCCCCTTCCCCCCTCCCCCCTCCCCCCTCCCTCCCTCCC
TCCCTTCCTCCCTCCCTCCCTCCCTTCCTGTGCCAGGAGGAAGAGGACGA
GGAGTTCGATTACATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGA
AAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGGTG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATC
AATTCTTCCCCCTTTTTCCTACCCCTCACACGTCGACTGATCTCCCCCTC
CCTCCCTCGCTTCCCCCCTCTCTCTCTTCCTCCTTCCTTTAGGCGCTCCT
CCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCC
TCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGAC
TTCACCAGGTCCATCTCTCTGCCCCCTCCCTCCTCCCCGCCCTACTTCCC
TCCCTCTCCACTCTAATGTCCGTCAGCGATTCCAAGGCTGTGATGCCTTT
CATATGACCAACCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCTT
CCCTCCCTTCTCGCCCCCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGT
ACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCC
CTGTGGGCAACACGGAGGTGGAGGTGAGAGGGCGGGTGGAAGGGAGGGAG
GGAAGGAGGGAAGGAGGGACGGAAGGCTCATGTATGCAGCCATTCACCCT
ATACTATCTCTCTCTGTCCCTCCCGCCCTCTCACCCTCCCTCCCCCCATT
CTATAGGCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCC
TGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTG
ACGTCCACTACGGCCTACATGCTGATGAATCGGGAGGTGAGGGAGGGAGG
GAGGGACGAAGGGAGCAAGGAAGACGATGGGTGTCTATGGACACCAAAAT
TCTGACGTCGGTGTCAAATTTTAACCTCTTAGAATTATGTATGCTTACCC
CTCCCTCCCTCCTTCCCTCCCTCTCTCACTGCCATCTCCTAGCTCATGAC
CCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCA
AGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGG
CACTTCAGTTTTACGATGGCGATGATACGTATTTGTGCTCGCCCTTCGTC
TCTTTCTCCCTTCCTCCCTACAGATTTATATCAAGGCCACTTATACAGAC
AACAACCGCCATTTCGGCGCTAGATCTCACATACATGATTTTCTCCGTCC
CTCCCTCCCTCCCTCCTCCCTCCTCCCTCCTCCCTTCCCCTAGGTCAACA
TCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAG
ATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTAC
TCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTC
CCCCCCCCCCTCCCCCTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATA
TCAAATAATATGTCCCGTCTTCATTTGAGGGATAGCTGCACACTTTCTGA
ATGCCGCGTTCTTATCGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCT
TCCCTCCCTCCAAGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCG
TATATGACTGTGCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAG
AGAATGAGGAACAGGAATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAA
GAACGAATTATAAGT
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Coding sequence (CDS) from alignment at chr13:881895..885659-

>NO13G03080.2 ID=NO13G03080.2|Name=NO13G03080.2|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr13:881895..885659- (Nannochloropsis oceanica)
ATGCTTAGAGCCATTAAAGACAAGATAAAAACGGATTTTTTGGTCTTGAC
GGGCGACCTGGTTTTGGGGCGGCACTTGCATGATGTCATCGACTTGCACA
GAGCTAAGCGGTCAGACTTAACCTTCCTCCTGAAGCGTTTACCTCCTCCG
TCTCCCGCCGTAGGGGGAAAGCGAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAAGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGTCCATCG
TTGGGGCAGCGGCGGCGATCGAGGAAGAGGACGAGGAGTTCGATTACATA
GGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGAAAGTCCCCGCCATCAC
GCTGGAAGGGTCAACCCTGAGGTTATCCAAGGCGCTCCTCCGACGCGTCT
CGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTCTACCTCCTT
GCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTTCACCAGCCT
GGAAGAAGACGTCCTTCCCTTCATTGTACGCCAGCAATTCAAAGGCCCAG
AAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACACGGAGGTGGAG
GCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCCTGATGA
CGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTGACGTCC
ACTACGGCCTACATGCTGATGAATCGGGAGCTCATGACCCTCTCCAGGGA
GGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGGAAACATGCG
TGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTCAACATCAAGGCCTCG
GTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGATTCACCAGTG
CGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTACTCTTACTAATA
CTGTGGTCTGTCCCCATGCCCGGATCCAGGAATTTTGCTCGCTCCAAGAC
TCCTTCGTAGGCTCGTATATGACTGTGCCAGCCAAGACCAAACTTAAGAA
TGGTGAGCTGATGAGAGAATGA
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Synonyms
Publications