NO13G02700, NO13G02700 (gene) Nannochloropsis oceanica

Overview
NameNO13G02700
Unique NameNO13G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2643
Alignment locationchr13:742752..745563 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:742752..745563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02700 vs. NCBI_GenBank
Match: EWM21932.1 (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana])

HSP 1 Score: 371.7 bits (953), Expect = 4.500e-99
Identity = 256/635 (40.31%), Postives = 324/635 (51.02%), Query Frame = 0 
Query:    1 MSTDAEDLTPLSXXXXXXXXXXXXXXXXXXXDVTFSPPAEVADVEEEEVVGAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRH-RQDILDNVQQAEKAEELPKPKRPVRRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRSTRKGHDDWLKIPVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAANNTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEED---TNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLAT--TSVITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLM 630
            M+TDA  + P S                   D TF P  EV + EE++VVGAWGRPISRFGFHRHGVYRRKPRL PSS+VANAQRVESIFLRH R++ILD + Q EK E + KPKRPVRR A                                                                                                                   TRST +G +DW+KIPV ATVRV +G LE LDG+VYVS +TG  F++QG VYFET+  G V K+F+PDSELPM+SEDH +FKEE ARIEEDR K+L+QAKHMLELG  NEE TFD+E++AA+ TLE                               RKEELR RM+GR +D LE+LEE  AI  L L ++S++   S +   ++  TS      +++R R  S+    E      E     +E  + + +  +     L   A  G  D QQQ +  +  +   + ++S EG  +   V+     LK       +  T+ I+V   +E    V P   KR+KINAADLAI TLAIASDI+ GL+ETGYVR+YEY DIHEVVVDK++PD DWGED+DL+
Sbjct:    1 MATDAGRVRPTSASSSVTNLSDSHAPITEEMDGTFLPATEVVEAEEQDVVGAWGRPISRFGFHRHGVYRRKPRLFPSSMVANAQRVESIFLRHYRENILDKI-QGEKVEPM-KPKRPVRRTA-----------------------------------------------AAEAGDPAHCFNGDRNGTSPAPQAGHVLGRRGPALSDVEQAHLPEGQTDESEHTQQKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLE------------------------------SRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISV---IEESGPVTPP-SKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLI 552
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BLAST of NO13G02700 vs. NCBI_GenBank
Match: XP_005853663.1 (hypothetical protein NGA_0106502, partial [Nannochloropsis gaditana CCMP526] >EKU22695.1 hypothetical protein NGA_0106502, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 119.8 bits (299), Expect = 3.100e-23
Identity = 65/121 (53.72%), Postives = 78/121 (64.46%), Query Frame = 0 
Query:  294 GGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAANNTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYRMIGRIDDTLEDLEE 415
            G V K+F+PDSELPM+SEDH +FKEE ARIEEDR K+L+QAKHMLELG  NEE TFD+E++AA+ TLE                               RKEELR RM+GR +D LE+LEE
Sbjct:    4 GSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLE------------------------------SRKEELRERMLGRAEDILEELEE 94
[Close]
BLAST of NO13G02700 vs. NCBI_GenBank
Match: EWM21935.1 (hypothetical protein Naga_100220g11 [Nannochloropsis gaditana])

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-9
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:  238 RSTRKGH---DDWLKIPVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVE 353
            RSTR  H   DDW+KIPVE  +  +    E ++G V++S E+G+L+K+ G+   E    G    + VP+  LPM++ DHP +  E+  + + + K++  +    +L  +N +A  ++E
Sbjct:   99 RSTRCAHDKIDDWIKIPVEVPISDAGNRSELIEGSVFLSSESGQLYKKSGKACVEAAFNGSYYTYLVPEESLPMLTVDHPHYIAEVDMMNKSKEKQIEASAIFSKLLQVNVDAHHEME 216
The following BLAST results are available for this feature:
BLAST of NO13G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21932.14.500e-9940.31hypothetical protein Naga_100220g3 [Nannochloropsi... [more]
XP_005853663.13.100e-2353.72hypothetical protein NGA_0106502, partial [Nannoch... [more]
EWM21935.11.100e-932.20hypothetical protein Naga_100220g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR024ncniR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001621NSK001621Nannochloropsis salina (N. salina CCMP1776)gene
NSK001627NSK001627Nannochloropsis salina (N. salina CCMP1776)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02700.2NO13G02700.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02700.1NO13G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02700.2NO13G02700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02700.1NO13G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605033gene_9040Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|618408gene_11389Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100220g11gene8498Nannochloropsis gaditana (N. gaditana B-31)gene
Naga_100220g3gene8505Nannochloropsis gaditana (N. gaditana B-31)gene


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02700 ID=NO13G02700|Name=NO13G02700|organism=Nannochloropsis oceanica|type=gene|length=2643bp
ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT
CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA
CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG
GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGgtaagtcg
actgcatgcaacccattaggcatgtgatcgattcattggactggaggagt
cgtaggattctctttctgctcaaattgtcctaattttgtaacacgcatac
ttgcacttatatactcatttgcaccacatgcatcgctaatgcattcccac
tatctgtcttgtgcacaaggtttctccgcatacatgaacacatcgtcgca
cgatccatgaaagccaaatattcgtaaacacaacaaagggctcacacact
tttaccccaacgcacacagCACGGGGTGTATCGACGCAAACCGAGACTCT
TACCAAGCAGCTTGGTAGCCAATGCGCAGCGAGTCGAGTCGATTTTCTTG
CGACACCGGCAGGATATTTTGGACAATGTGCAGCAAGCAGAGAAAGCAGA
GGAACTTCCGAAACCGAAGCGGCCTGTGCGGCGTCCTGCTGCTTTGGAAC
AGGAGGAACAAGCCACTACTGAGAATGGAGACAAGGGATTATTTCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAA
GAAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTC
GCACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAA
GTTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGA
AAAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGT
GTCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTG
AGACCGGACgtgagtatagagaagatatgtgtttttccggcgtccgtttt
tttgggggctagcgacgatctcttgaactcacaaacgcgcgcacatgctc
tttctcgccacataaatacagGCCTTTTCAAGCGACAAGGCCGTGTGTAC
TTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGACTC
GGAGCTTCCCATGATTTCGGgtatgtatagatgtagagaaacggatcgag
agatagacagtacaaaatattgtcacctgcgtcatactcttgcacaaatc
tacgtactaacgcgcacttacaaactcaaacacagAGGATCATCCAGTTT
TCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCC
CAAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTT
TGACGTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTC
TTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCAAAC
TTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATA
TCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAG
gtaagcaattaagggaggtctagtcaccacaaggcacaagtagcagattt
tatgaaatgaaaagacttatttcatcgtcccctcttcttcctctccgaac
agCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCA
TGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACG
GGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGA
AGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACG
CTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAG
GGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAG
CGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGG
TTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACG
ACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCT
GCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCA
GCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGC
TACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAA
GTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGT
GATTGACTGCTAGTCCCCAACCTCCCCATTAGCCTCCCTTTGCTCCTTTA
GTCACCCCATTAGCCACAACATTGGCAGAAACCCGTAGAAACCACCATGT
GGATTCGTTCGACGGAAAGAAAATAGCATAGTAGAGGTCGCAG
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protein sequence of NO13G02700.2

>NO13G02700.2-protein ID=NO13G02700.2-protein|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSTDAEDLTPLSSSSSVTTSSEQHPPAPPDPDVTFSPPAEVADVEEEEVV
GAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRHRQDILDN
VQQAEKAEELPKPKRPVRRPAALEQEEQATTENGDKGLFQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKQHKQREKEEEEHQQQGL
PPGAQSQSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKI
PVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFF
VPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFD
VEQRAANNTLEFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASI
PMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEEDTNEEDVVQQEGAMS
DANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDL
AVQRSSYTLKKGEITLATTSVITVDDAVEGFDSVLPQGKKRRKINAADLA
ISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLMA
P*
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protein sequence of NO13G02700.1

>NO13G02700.1-protein ID=NO13G02700.1-protein|Name=NO13G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MSTDAEDLTPLSSSSSVTTSSEQHPPAPPDPDVTFSPPAEVADVEEEEVV
GAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRHRQDILDN
VQQAEKAEELPKPKRPVRRPAALEQEEQATTENGDKGLFQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKQHKQREKEEEEHQQQGL
PPGAQSQSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKI
PVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFF
VPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFD
VEQRAANNTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYR
MIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGC
KSQRPRESSDIIVEEDTNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGL
EDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLATTS
VITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYV
REYEYDDIHEVVVDKLYPDPDWGEDEDLMAP*
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Synonyms
Publications