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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:742752..745394 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02700.1 vs.
Match: EWM21932.1 (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana]) HSP 1 Score: 292.7 bits (748), Expect = 2.700e-75 Identity = 192/428 (44.86%), Postives = 258/428 (60.28%), Query Frame = 0
Query: 207 QSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKIPVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAANNTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEED---TNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLAT--TSVITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLM 630
Q+H E +D+ E Q Q +S++ ++ RR TRST +G +DW+KIPV ATVRV +G LE LDG+VYVS +TG F++QG VYFET+ G V K+F+PDSELPM+SEDH +FKEE ARIEEDR K+L+QAKHMLELG NEE TFD+E++AA+ TLE RKEELR RM+GR +D LE+LEE AI L L ++S++ S + ++ TS +++R R S+ E E +E + + + + L A G D QQQ + + + + ++S EG + V+ LK + T+ I+V +E V P KR+KINAADLAI TLAIASDI+ GL+ETGYVR+YEY DIHEVVVDK++PD DWGED+DL+
Sbjct: 160 QAHLPEGQTDESEHTQ-QKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLE------------------------------SRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISV---IEESGPVTPP-SKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLI 552
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02700.1 ID=NO13G02700.1|Name=NO13G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGCACGGGGT GTATCGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGC AGCGAGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAAT GTGCAGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGT GCGGCGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATG GAGACAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATAAAC AACATAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTG CCTCCGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCA GCAAGAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGC GGCGGCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATT CCTGTAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGA TGGGATCGTCTATGTTAGCGTTGAGACCGGACGCCTTTTCAAGCGACAAG GCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTT GTCCCCGACTCGGAGCTTCCCATGATTTCGGAGGATCATCCAGTTTTCAA GGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAAG CCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGAC GTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTCTTCC TCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCAAACTTAC CTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATATCGC ATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAGCTGC CATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCATGTCCT CTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACGGGTTGC AAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGAAGATAC AAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACGCTAATC AAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAGGGATTG GAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAGCGCGCC TGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTTCAGC GCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACGACATCG GTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCTGCCGCA GGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCAGCACGC TCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGCTACGTA CGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAAGTTGTA CCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGTGATTGA CTGCTAGTCCCCAACCTCCCCATTAGCCTCCCTTTGCTCCTTTAGTCACC CCATTAGCCACAACATTGGCAGAAACCCGTAGAAACCACCATGTGGATTC GTTCGACGGAAAGAAAATAGCATAGTAGAGGTCGCAG back to topprotein sequence of NO13G02700.1 >NO13G02700.1-protein ID=NO13G02700.1-protein|Name=NO13G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp MSTDAEDLTPLSSSSSVTTSSEQHPPAPPDPDVTFSPPAEVADVEEEEVV GAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRHRQDILDN VQQAEKAEELPKPKRPVRRPAALEQEEQATTENGDKGLFQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKQHKQREKEEEEHQQQGL PPGAQSQSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKI PVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFF VPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFD VEQRAANNTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYR MIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGC KSQRPRESSDIIVEEDTNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGL EDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLATTS VITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYV REYEYDDIHEVVVDKLYPDPDWGEDEDLMAP* back to topmRNA from alignment at chr13:742752..745394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02700.1 ID=NO13G02700.1|Name=NO13G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at chr13:742752..745394- (Nannochloropsis oceanica) ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT
CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA
CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG
GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGGTAAGTCG
ACTGCATGCAACCCATTAGGCATGTGATCGATTCATTGGACTGGAGGAGT
CGTAGGATTCTCTTTCTGCTCAAATTGTCCTAATTTTGTAACACGCATAC
TTGCACTTATATACTCATTTGCACCACATGCATCGCTAATGCATTCCCAC
TATCTGTCTTGTGCACAAGGTTTCTCCGCATACATGAACACATCGTCGCA
CGATCCATGAAAGCCAAATATTCGTAAACACAACAAAGGGCTCACACACT
TTTACCCCAACGCACACAGCACGGGGTGTATCGACGCAAACCGAGACTCT
TACCAAGCAGCTTGGTAGCCAATGCGCAGCGAGTCGAGTCGATTTTCTTG
CGACACCGGCAGGATATTTTGGACAATGTGCAGCAAGCAGAGAAAGCAGA
GGAACTTCCGAAACCGAAGCGGCCTGTGCGGCGTCCTGCTGCTTTGGAAC
AGGAGGAACAAGCCACTACTGAGAATGGAGACAAGGGATTATTTCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAA
GAAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTC
GCACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAA
GTTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGA
AAAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGT
GTCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTG
AGACCGGACGTGAGTATAGAGAAGATATGTGTTTTTCCGGCGTCCGTTTT
TTTGGGGGCTAGCGACGATCTCTTGAACTCACAAACGCGCGCACATGCTC
TTTCTCGCCACATAAATACAGGCCTTTTCAAGCGACAAGGCCGTGTGTAC
TTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGACTC
GGAGCTTCCCATGATTTCGGGTATGTATAGATGTAGAGAAACGGATCGAG
AGATAGACAGTACAAAATATTGTCACCTGCGTCATACTCTTGCACAAATC
TACGTACTAACGCGCACTTACAAACTCAAACACAGAGGATCATCCAGTTT
TCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCC
CAAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTT
TGACGTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTC
TTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCAAAC
TTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATA
TCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAG
GTAAGCAATTAAGGGAGGTCTAGTCACCACAAGGCACAAGTAGCAGATTT
TATGAAATGAAAAGACTTATTTCATCGTCCCCTCTTCTTCCTCTCCGAAC
AGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCA
TGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACG
GGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGA
AGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACG
CTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAG
GGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAG
CGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGG
TTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACG
ACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCT
GCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCA
GCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGC
TACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAA
GTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGT
GATTGACTGCTAGTCCCCAACCTCCCCATTAGCCTCCCTTTGCTCCTTTA
GTCACCCCATTAGCCACAACATTGGCAGAAACCCGTAGAAACCACCATGT
GGATTCGTTCGACGGAAAGAAAATAGCATAGTAGAGGTCGCAG back to topCoding sequence (CDS) from alignment at chr13:742752..745394- >NO13G02700.1 ID=NO13G02700.1|Name=NO13G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr13:742752..745394- (Nannochloropsis oceanica) ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGCACGGGGT GTATCGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGC AGCGAGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAAT GTGCAGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGT GCGGCGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATG GAGACAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATAAAC AACATAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTG CCTCCGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCA GCAAGAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGC GGCGGCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATT CCTGTAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGA TGGGATCGTCTATGTTAGCGTTGAGACCGGACGCCTTTTCAAGCGACAAG GCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTT GTCCCCGACTCGGAGCTTCCCATGATTTCGGAGGATCATCCAGTTTTCAA GGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAAG CCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGAC GTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTCTTCC TCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCAAACTTAC CTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATATCGC ATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAGCTGC CATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCATGTCCT CTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACGGGTTGC AAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGAAGATAC AAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACGCTAATC AAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAGGGATTG GAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAGCGCGCC TGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTTCAGC GCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACGACATCG GTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCTGCCGCA GGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCAGCACGC TCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGCTACGTA CGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAAGTTGTA CCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGTGA back to top
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