NO13G02700.2, NO13G02700.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02700.2
Unique NameNO13G02700.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr13:742752..745563 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:742752..745563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G02700.2 vs.
Match: EWM21932.1 (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana])

HSP 1 Score: 306.2 bits (783), Expect = 2.200e-79
Identity = 192/398 (48.24%), Postives = 258/398 (64.82%), Query Frame = 0
Query:  207 QSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKIPVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAANNTLEFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEED---TNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLAT--TSVITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLM 600
            Q+H  E  +D+ E  Q Q +S++ ++ RR TRST +G +DW+KIPV ATVRV +G LE LDG+VYVS +TG  F++QG VYFET+  G V K+F+PDSELPM+SEDH +FKEE ARIEEDR K+L+QAKHMLELG  NEE TFD+E++AA+ TLE RKEELR RM+GR +D LE+LEE  AI  L L ++S++   S +   ++  TS      +++R R  S+    E      E     +E  + + +  +     L   A  G  D QQQ +  +  +   + ++S EG  +   V+     LK       +  T+ I+V   +E    V P   KR+KINAADLAI TLAIASDI+ GL+ETGYVR+YEY DIHEVVVDK++PD DWGED+DL+
Sbjct:  160 QAHLPEGQTDESEHTQ-QKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISV---IEESGPVTPP-SKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLI 552          
The following BLAST results are available for this feature:
BLAST of NO13G02700.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21932.12.200e-7948.24hypothetical protein Naga_100220g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02700NO13G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02700.2NO13G02700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02700.2.cds1NO13G02700.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02700.2.cds2NO13G02700.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02700.2.cds3NO13G02700.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02700.2.cds4NO13G02700.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02700.2.cds5NO13G02700.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02700.2.cds6NO13G02700.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp
TTTAATGCAACAAATCACAGGTGGGCATCGGAGGGCATCCGACGTGTGTC
ACCTGTTCGCAGGCCCGGGCGCAGGTGTTGGAGCAAATCCCGAAGTCGTC
ATCTTCCAAACGCCGTGCTGAGAACATAACCCCACTGCCTTCACTGTTAG
CCTTGCATTTTTGTTTGCCATGTCAACAGACGCTGAGGACTTGACACCTC
TGTCATCCTCATCTTCCGTCACGACCTCGAGCGAGCAGCATCCTCCGGCA
CCGCCTGATCCCGATGTGACCTTTTCCCCTCCTGCCGAAGTAGCCGACGT
CGAAGAGGAGGAGGTAGTGGGCGCCTGGGGCCGCCCAATTTCTCGATTTG
GTTTTCATCGGCACGGGGTGTATCGACGCAAACCGAGACTCTTACCAAGC
AGCTTGGTAGCCAATGCGCAGCGAGTCGAGTCGATTTTCTTGCGACACCG
GCAGGATATTTTGGACAATGTGCAGCAAGCAGAGAAAGCAGAGGAACTTC
CGAAACCGAAGCGGCCTGTGCGGCGTCCTGCTGCTTTGGAACAGGAGGAA
CAAGCCACTACTGAGAATGGAGACAAGGGATTATTTCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAAGAAGAAGA
GCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTCGCACCCCG
CGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAAGTTCATCC
TCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGAAAAGGACA
CGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGTGTCAACGG
GAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTGAGACCGGA
CGCCTTTTCAAGCGACAAGGCCGTGTGTACTTTGAGACTATAAGGGGGGG
TGGCGTGTCCAAGTTTTTTGTCCCCGACTCGGAGCTTCCCATGATTTCGG
AGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGG
GCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGATTTTTGAA
CGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAATAACACATTGG
AGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGAC
ACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTATT
CAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCT
CTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAG
AGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCA
ACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTA
CATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTA
GTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGA
GGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGA
AGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCT
GTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGAT
CAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCA
ATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGAC
ATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGA
GGACGAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCAACCTCCCC
ATTAGCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAACATTGGCA
GAAACCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAGAAAATAGC
ATAGTAGAGGTCGCAG
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protein sequence of NO13G02700.2

>NO13G02700.2-protein ID=NO13G02700.2-protein|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MSTDAEDLTPLSSSSSVTTSSEQHPPAPPDPDVTFSPPAEVADVEEEEVV
GAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRHRQDILDN
VQQAEKAEELPKPKRPVRRPAALEQEEQATTENGDKGLFQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKQHKQREKEEEEHQQQGL
PPGAQSQSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKI
PVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFF
VPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFD
VEQRAANNTLEFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASI
PMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEEDTNEEDVVQQEGAMS
DANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDL
AVQRSSYTLKKGEITLATTSVITVDDAVEGFDSVLPQGKKRRKINAADLA
ISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLMA
P*
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mRNA from alignment at chr13:742752..745563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2812bp|location=Sequence derived from alignment at chr13:742752..745563- (Nannochloropsis oceanica)
TTTAATGCAACAAATCACAGGTGGGCATCGGAGGGCATCCGACGTGTGTC ACCTGTTCGCAGGCCCGGGCGCAGGTGTTGGAGCAAATCCCGAAGTCGTC ATCTTCCAAACGCCGTGCTGAGAACATAACCCCACTGCCTTCACTGTTAG CCTTGCATTTTTGTTTGCCATGTCAACAGACGCTGAGGACTTGACACCTC TGTCATCCTCATCTTCCGTCACGACCTCGAGCGAGCAGCATCCTCCGGCA CCGCCTGATCCCGATGTGACCTTTTCCCCTCCTGCCGAAGTAGCCGACGT CGAAGAGGAGGAGGTAGTGGGCGCCTGGGGCCGCCCAATTTCTCGATTTG GTTTTCATCGGGTAAGTCGACTGCATGCAACCCATTAGGCATGTGATCGA TTCATTGGACTGGAGGAGTCGTAGGATTCTCTTTCTGCTCAAATTGTCCT AATTTTGTAACACGCATACTTGCACTTATATACTCATTTGCACCACATGC ATCGCTAATGCATTCCCACTATCTGTCTTGTGCACAAGGTTTCTCCGCAT ACATGAACACATCGTCGCACGATCCATGAAAGCCAAATATTCGTAAACAC AACAAAGGGCTCACACACTTTTACCCCAACGCACACAGCACGGGGTGTAT CGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGCAGCG AGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAATGTGC AGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGTGCGG CGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATGGAGA CAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACATAAACAACA TAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTGCCTC CGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCAGCAA GAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGCGGCG GCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATTCCTG TAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGATGGG ATCGTCTATGTTAGCGTTGAGACCGGACGTGAGTATAGAGAAGATATGTG TTTTTCCGGCGTCCGTTTTTTTGGGGGCTAGCGACGATCTCTTGAACTCA CAAACGCGCGCACATGCTCTTTCTCGCCACATAAATACAGGCCTTTTCAA GCGACAAGGCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCA AGTTTTTTGTCCCCGACTCGGAGCTTCCCATGATTTCGGGTATGTATAGA TGTAGAGAAACGGATCGAGAGATAGACAGTACAAAATATTGTCACCTGCG TCATACTCTTGCACAAATCTACGTACTAACGCGCACTTACAAACTCAAAC ACAGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGA CCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGATTTT TGAACGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAATAACACA TTGGAGGTATGCAGGCCTCTTCCTCATAAACTTGGCATGTTTGCTTTGGG TACCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACACAGTTTC GCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGACACACTA GAGGATCTGGAGGAAGGAGGTAAGCAATTAAGGGAGGTCTAGTCACCACA AGGCACAAGTAGCAGATTTTATGAAATGAAAAGACTTATTTCATCGTCCC CTCTTCTTCCTCTCCGAACAGCTGCCATCGATTGCCTCGCGTTATTCAAA AAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCC CACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCT CTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCAACAG GAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTACATT ACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTAGTGT CCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGC GAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGG CGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCTGTCG AGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAAC GCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCAATGC GGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGACATAC ACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGAGGAC GAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCAACCTCCCCATTA GCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAACATTGGCAGAAA CCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAGAAAATAGCATAG TAGAGGTCGCAG
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Coding sequence (CDS) from alignment at chr13:742752..745563-

>NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr13:742752..745563- (Nannochloropsis oceanica)
ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT
CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA
CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG
GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGCACGGGGT
GTATCGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGC
AGCGAGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAAT
GTGCAGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGT
GCGGCGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATG
GAGACAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATAAAC
AACATAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTG
CCTCCGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCA
GCAAGAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGC
GGCGGCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATT
CCTGTAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGA
TGGGATCGTCTATGTTAGCGTTGAGACCGGACGCCTTTTCAAGCGACAAG
GCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTT
GTCCCCGACTCGGAGCTTCCCATGATTTCGGAGGATCATCCAGTTTTCAA
GGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAAG
CCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGAC
GTTGAACAGAGGGCGGCCAATAACACATTGGAGTTTCGCAAGGAAGAGCT
GCGATATCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGG
AAGGAGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATT
CCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAA
GACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGG
AGGAAGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCG
GACGCTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGT
GGAGGGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCG
CCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTG
GCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGC
CACGACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTG
TCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCC
ATCAGCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAAC
GGGCTACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGG
ACAAGTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCG
CCGTGA
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Synonyms
Publications