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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:742752..745563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02700.2 vs.
Match: EWM21932.1 (hypothetical protein Naga_100220g3 [Nannochloropsis gaditana]) HSP 1 Score: 306.2 bits (783), Expect = 2.200e-79 Identity = 192/398 (48.24%), Postives = 258/398 (64.82%), Query Frame = 0
Query: 207 QSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKIPVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFFVPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAANNTLEFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEED---TNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLAT--TSVITVDDAVEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLM 600
Q+H E +D+ E Q Q +S++ ++ RR TRST +G +DW+KIPV ATVRV +G LE LDG+VYVS +TG F++QG VYFET+ G V K+F+PDSELPM+SEDH +FKEE ARIEEDR K+L+QAKHMLELG NEE TFD+E++AA+ TLE RKEELR RM+GR +D LE+LEE AI L L ++S++ S + ++ TS +++R R S+ E E +E + + + + L A G D QQQ + + + + ++S EG + V+ LK + T+ I+V +E V P KR+KINAADLAI TLAIASDI+ GL+ETGYVR+YEY DIHEVVVDK++PD DWGED+DL+
Sbjct: 160 QAHLPEGQTDESEHTQ-QKASADLKELRRATRSTGRGIEDWIKIPVAATVRVPSGDLEKLDGMVYVSTDTGAFFRQQGGVYFETMWKGSVHKYFIPDSELPMVSEDHFLFKEERARIEEDRLKRLSQAKHMLELGCTNEEVTFDIEKKAADRTLESRKEELRERMLGRAEDILEELEEEVAITSLPLIRESSAHHKSLAWSGSTPATSQSPARVRARRRRSGSEFSDAETLVLEKEIKAAHKENNVPNRSTRMSSSRNLSASAEMGPSDSQQQPLFPALKSDVSKMDSSSEGRTDAQDVETECNLLKDENQAYESFCTNRISV---IEESGPVTPP-SKRQKINAADLAICTLAIASDISTGLRETGYVRDYEYVDIHEVVVDKMFPDADWGEDQDLI 552
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp TTTAATGCAACAAATCACAGGTGGGCATCGGAGGGCATCCGACGTGTGTC ACCTGTTCGCAGGCCCGGGCGCAGGTGTTGGAGCAAATCCCGAAGTCGTC ATCTTCCAAACGCCGTGCTGAGAACATAACCCCACTGCCTTCACTGTTAG CCTTGCATTTTTGTTTGCCATGTCAACAGACGCTGAGGACTTGACACCTC TGTCATCCTCATCTTCCGTCACGACCTCGAGCGAGCAGCATCCTCCGGCA CCGCCTGATCCCGATGTGACCTTTTCCCCTCCTGCCGAAGTAGCCGACGT CGAAGAGGAGGAGGTAGTGGGCGCCTGGGGCCGCCCAATTTCTCGATTTG GTTTTCATCGGCACGGGGTGTATCGACGCAAACCGAGACTCTTACCAAGC AGCTTGGTAGCCAATGCGCAGCGAGTCGAGTCGATTTTCTTGCGACACCG GCAGGATATTTTGGACAATGTGCAGCAAGCAGAGAAAGCAGAGGAACTTC CGAAACCGAAGCGGCCTGTGCGGCGTCCTGCTGCTTTGGAACAGGAGGAA CAAGCCACTACTGAGAATGGAGACAAGGGATTATTTCAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAAGAAGAAGA GCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTCGCACCCCG CGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAAGTTCATCC TCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGAAAAGGACA CGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGTGTCAACGG GAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTGAGACCGGA CGCCTTTTCAAGCGACAAGGCCGTGTGTACTTTGAGACTATAAGGGGGGG TGGCGTGTCCAAGTTTTTTGTCCCCGACTCGGAGCTTCCCATGATTTCGG AGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGG GCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGATTTTTGAA CGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAATAACACATTGG AGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGAC ACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTATT CAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCT CTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAG AGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCA ACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTA CATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTA GTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGA GGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGA AGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCT GTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGAT CAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCA ATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGAC ATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGA GGACGAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCAACCTCCCC ATTAGCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAACATTGGCA GAAACCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAGAAAATAGC ATAGTAGAGGTCGCAG back to topprotein sequence of NO13G02700.2 >NO13G02700.2-protein ID=NO13G02700.2-protein|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp MSTDAEDLTPLSSSSSVTTSSEQHPPAPPDPDVTFSPPAEVADVEEEEVV GAWGRPISRFGFHRHGVYRRKPRLLPSSLVANAQRVESIFLRHRQDILDN VQQAEKAEELPKPKRPVRRPAALEQEEQATTENGDKGLFQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKQHKQREKEEEEHQQQGL PPGAQSQSHPAEEHSDQQEPPQNQSSSSEREDSRRPTRSTRKGHDDWLKI PVEATVRVSTGTLETLDGIVYVSVETGRLFKRQGRVYFETIRGGGVSKFF VPDSELPMISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFD VEQRAANNTLEFRKEELRYRMIGRIDDTLEDLEEGAAIDCLALFKKSASI PMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEEDTNEEDVVQQEGAMS DANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETEASVEGEVEDL AVQRSSYTLKKGEITLATTSVITVDDAVEGFDSVLPQGKKRRKINAADLA ISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDPDWGEDEDLMA P* back to topmRNA from alignment at chr13:742752..745563- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=mRNA|length=2812bp|location=Sequence derived from alignment at chr13:742752..745563- (Nannochloropsis oceanica) TTTAATGCAACAAATCACAGGTGGGCATCGGAGGGCATCCGACGTGTGTC
ACCTGTTCGCAGGCCCGGGCGCAGGTGTTGGAGCAAATCCCGAAGTCGTC
ATCTTCCAAACGCCGTGCTGAGAACATAACCCCACTGCCTTCACTGTTAG
CCTTGCATTTTTGTTTGCCATGTCAACAGACGCTGAGGACTTGACACCTC
TGTCATCCTCATCTTCCGTCACGACCTCGAGCGAGCAGCATCCTCCGGCA
CCGCCTGATCCCGATGTGACCTTTTCCCCTCCTGCCGAAGTAGCCGACGT
CGAAGAGGAGGAGGTAGTGGGCGCCTGGGGCCGCCCAATTTCTCGATTTG
GTTTTCATCGGGTAAGTCGACTGCATGCAACCCATTAGGCATGTGATCGA
TTCATTGGACTGGAGGAGTCGTAGGATTCTCTTTCTGCTCAAATTGTCCT
AATTTTGTAACACGCATACTTGCACTTATATACTCATTTGCACCACATGC
ATCGCTAATGCATTCCCACTATCTGTCTTGTGCACAAGGTTTCTCCGCAT
ACATGAACACATCGTCGCACGATCCATGAAAGCCAAATATTCGTAAACAC
AACAAAGGGCTCACACACTTTTACCCCAACGCACACAGCACGGGGTGTAT
CGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGCAGCG
AGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAATGTGC
AGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGTGCGG
CGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATGGAGA
CAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACATAAACAACA
TAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTGCCTC
CGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCAGCAA
GAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGCGGCG
GCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATTCCTG
TAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGATGGG
ATCGTCTATGTTAGCGTTGAGACCGGACGTGAGTATAGAGAAGATATGTG
TTTTTCCGGCGTCCGTTTTTTTGGGGGCTAGCGACGATCTCTTGAACTCA
CAAACGCGCGCACATGCTCTTTCTCGCCACATAAATACAGGCCTTTTCAA
GCGACAAGGCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCA
AGTTTTTTGTCCCCGACTCGGAGCTTCCCATGATTTCGGGTATGTATAGA
TGTAGAGAAACGGATCGAGAGATAGACAGTACAAAATATTGTCACCTGCG
TCATACTCTTGCACAAATCTACGTACTAACGCGCACTTACAAACTCAAAC
ACAGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGA
CCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGATTTT
TGAACGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAATAACACA
TTGGAGGTATGCAGGCCTCTTCCTCATAAACTTGGCATGTTTGCTTTGGG
TACCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACACAGTTTC
GCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGACACACTA
GAGGATCTGGAGGAAGGAGGTAAGCAATTAAGGGAGGTCTAGTCACCACA
AGGCACAAGTAGCAGATTTTATGAAATGAAAAGACTTATTTCATCGTCCC
CTCTTCTTCCTCTCCGAACAGCTGCCATCGATTGCCTCGCGTTATTCAAA
AAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCC
CACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCT
CTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCAACAG
GAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTACATT
ACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTAGTGT
CCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGC
GAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGG
CGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCTGTCG
AGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAAC
GCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCAATGC
GGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGACATAC
ACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGAGGAC
GAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCAACCTCCCCATTA
GCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAACATTGGCAGAAA
CCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAGAAAATAGCATAG
TAGAGGTCGCAG back to topCoding sequence (CDS) from alignment at chr13:742752..745563- >NO13G02700.2 ID=NO13G02700.2|Name=NO13G02700.2|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr13:742752..745563- (Nannochloropsis oceanica) ATGTCAACAGACGCTGAGGACTTGACACCTCTGTCATCCTCATCTTCCGT CACGACCTCGAGCGAGCAGCATCCTCCGGCACCGCCTGATCCCGATGTGA CCTTTTCCCCTCCTGCCGAAGTAGCCGACGTCGAAGAGGAGGAGGTAGTG GGCGCCTGGGGCCGCCCAATTTCTCGATTTGGTTTTCATCGGCACGGGGT GTATCGACGCAAACCGAGACTCTTACCAAGCAGCTTGGTAGCCAATGCGC AGCGAGTCGAGTCGATTTTCTTGCGACACCGGCAGGATATTTTGGACAAT GTGCAGCAAGCAGAGAAAGCAGAGGAACTTCCGAAACCGAAGCGGCCTGT GCGGCGTCCTGCTGCTTTGGAACAGGAGGAACAAGCCACTACTGAGAATG GAGACAAGGGATTATTTCAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATAAAC AACATAAACAACGAGAAAAAGAAGAAGAAGAGCATCAGCAGCAAGGCTTG CCTCCGGGAGCGCAGAGCCAGTCGCACCCCGCGGAGGAGCACTCGGATCA GCAAGAGCCCCCGCAGAATCAAAGTTCATCCTCGGAACGGGAGGACTCGC GGCGGCCTACGCGCTCTACGAGAAAAGGACACGATGATTGGCTAAAGATT CCTGTAGAAGCAACTGTTCGGGTGTCAACGGGAACCTTGGAGACACTCGA TGGGATCGTCTATGTTAGCGTTGAGACCGGACGCCTTTTCAAGCGACAAG GCCGTGTGTACTTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTT GTCCCCGACTCGGAGCTTCCCATGATTTCGGAGGATCATCCAGTTTTCAA GGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAAG CCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGAC GTTGAACAGAGGGCGGCCAATAACACATTGGAGTTTCGCAAGGAAGAGCT GCGATATCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGG AAGGAGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATT CCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAA GACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGG AGGAAGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCG GACGCTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGT GGAGGGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCG CCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTG GCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGC CACGACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTG TCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCC ATCAGCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAAC GGGCTACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGG ACAAGTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCG CCGTGA back to top
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