NO13G02510, NO13G02510 (gene) Nannochloropsis oceanica

Overview
NameNO13G02510
Unique NameNO13G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2723
Alignment locationchr13:699045..701767 -

Link to JBrowse

Properties
Property NameValue
DescriptionLeucine-rich repeat, cysteine-containing subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:699045..701767 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
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BLAST of NO13G02510 vs. NCBI_GenBank
Match: EWM21918.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 1.900e-68
Identity = 219/327 (66.97%), Postives = 246/327 (75.23%), Query Frame = 0 
Query:   91 MTLVDICVDAICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTRLDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTPQLKTLDLNQGGQFSASALCACLEGLTEIEFLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQSNSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRKINLAHSGLR--DVGSLS 416
            M+L+D+C+D+IC+ IL YE P  FD LPP+LVRR+ DSL +HKALTKLTL  LR CDVTRLDLS CK V+D WL PF  K               AGLL+LTELG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PQLKTLD+N   QFS++++  C+  + EI  LDLGYCP G+G  ALEVLTRG A  TLQ LILD+SR L+NADL+ LG+   L+ LSLR C +ISDAGLCQLP  LE LD SHCRGVR LP Q L  LR +N AHSGLR  DVGSL+
Sbjct:    1 MSLIDLCIDSICQNILCYEVPPSFDVLPPDLVRRIFDSLTSHKALTKLTLLPLRYCDVTRLDLSPCKGVTDQWLRPFTDKXXXXXXXXXXXXXXXAGLLNLTELGGLQVADLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPQLKTLDVNACRQFSSTSISFCVGKMREIRHLDLGYCPRGVGGGALEVLTRGPAPTTLQVLILDSSRSLSNADLFSLGKFRCLQRLSLRNCTTISDAGLCQLPSSLETLDASHCRGVRRLPAQSLPCLRSVNFAHSGLRDSDVGSLA 327
The following BLAST results are available for this feature:
BLAST of NO13G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21918.11.900e-6866.97Leucine-rich repeat, cysteine-containing subtype [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001644NSK001644Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02510.1NO13G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596238gene_6760Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g18gene8523Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02510.1NO13G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02510 ID=NO13G02510|Name=NO13G02510|organism=Nannochloropsis oceanica|type=gene|length=2723bp
AGCAGCCGTTGAGATTAGCAGCTAGCTAATGGGCAGTAGCTTGTCCAGGA
CAGCCGTCACTGGTGGGTCCGAAGGAGGTGGAGGCGAGGCAGCCCTTATG
TCAGGCCATCACTCCTGCGAGAGGCAGGAAGGGCTGGATGTGGAGCTAAG
AAAAGATAAGGCGGTACCCATCGACGTATCCTGCGAGAAGTCCGTGCATG
GTTTTGTCACGGAGATGTACCGCTTCTCGCAAGGAGGACGTTGTCGCAGg
tacgttgagaaaagagggaggaggtatggggggcggggggaggtcatcct
gatccgacgtgagatgtgatcactcgcagccaccctcagttgcttctgga
cagtaccaaaaacaaatttaataatacacaaaccagggactcgtagatga
tcacggaaacagtgccactccaggctcgcagattagctacccttgcacac
gtgtcgtctcacacacgttttgctctttccacactccccacacccgaaca
aagcagATGCCGCCGACCCAAGCAGCAGCAAGTGGAAGACCACAAACAAG
AACTCATGACGCTAGTCGACATCTGCGTCGACGCTATTTGCGAGAAAATT
TTGATTTACGAGGCCCCGTTGCCCTTTGACTGCCTGCCACCTGAGCTTGT
CCGCCGCCTGTTGGATTCCTTGATGAACCACAAAGCACTCACAAAACTAA
CGgtaggcgtgaatatagagtgttattttcccctttctatctctatttaa
tttttagatggaatgccaaacgttcttttcgtggtaccccctcttccctt
cccaccaaccacctgcagCTCCAATCCCTGCGCGACTGCGACGTTACCCG
CCTAGATCTCTCCTCCTGCAAAGACGTCTCCGACGATTGGCTCGAACCAT
TCGGTACCAAAAGCTTAACCCATTTGTCCCTTGCCTACTGCCCTGGTGTG
ACCGACGCTGGCCTCCTCCACCTCACCGAGCTAGGCGCCCTTCGGCATGC
AAATCTGACGGGCTGCACGGGCTTACGCTTCGGGGGCCTAACGCCATTTA
AACAGTGTTGGTTAATGACAACGCTGAATTTGAGTGGGTGTCGTCATCTG
ATGGATGACGCTCTCAAGCCTCTGGCACATTTGCCCGCCCTGCAGCATCT
CCGATTGCGCGGCTGCCGGCAGCTGACAGACGTTGCCTTGACTTTCCTTT
CCCCCCTCACGCCCCAACTCAAAACCCTGGATTTGAACCAAGGAGGGCAG
TTTTCAGCATCAGCTCTCTGTGCATGTCTGGAGGGATTGACTGAAATTGA
GTTTCTGGACCTGGGTTATTGTCCGGAGGGAATAGGGCGGGAGGCGTTGG
AGGTGCTCACCCGGGGCCGGGCCTCCGCCACCTTGCAAACCTTGATTCTT
GATGCCTCTCGAAAGCTGACCAACGCCGATTTATACTTGCTGGGACAGTC
AAATTCTTTGAGAGTCTTGAGTTTGCGAGCATGTCCGAGCATAAGCGATG
CAGGGCTCTGTCAGTTACCACAGGGATTGGAAGACTTAGATGTGAGCCAT
TGTCGAGGGGTTCGACTGTTGCCCAACCAGATATTGATGAGCTTGAGGAA
GATCAATCTTGCACATTCAGGACTGAGGGATGTCGGATCGTTGAGTGAGT
TTACGGCACTGGAAGAGGTTAATCTGGACTCATGCGCCATTGgtacggaa
ttggggagggagagataggggaaaggaaggaggaaggaaggaaggaaggg
ggctcacccactctgcacgttagctaggcttacacctttcctccctccct
ccctttctacctcattcatttccgacagGGAACGCCGGCCTGTCTGCCCT
CCTGCCCCTTAAGAAGCTCCAACGCCTCAATCTAGCTGACACGGGGATCT
CCAACCATGGCATGGACGTCCTCGCCGCCCTCCCCTCCCTCTCCTCCCTC
TCGCTGTTCTACACTAACATCACCAATACTGGCGTCCAGCAGCTGAGCTC
CTTAAAAAATCTTACCTCTCTTAACCTTGATAGTCGTGAATTGACCGATC
AATCACTCTTGCATATATCGACTCTGACGAAGTTGGAGCATTTAGATGTG
TTCTCCGCGCGTGTGTCCGACGTCGGCTTATGCTTCCTGACCTCTTTGTC
TGGGCTGGTAAGTCTCGAGATATGTGGTGGTAAAATTACGGATTTAGGGT
TGAAGTACATTTCGTGCTTGCGTGCCTTGAGAAGATTAAATGTGAGCCAA
AATATGCGGGTGACCAACATGGGTTTGTATTATCTCGCGCAAATGAGTGA
TTTGGAGGTGCTGAATGTGTCACATTGTCAGGTGTCTGCTCCAGCAGCCC
TGGACCCTCTTCTGAAAATGAGGATGTTGAAAGTGCTGGCAGTGAACGGG
TGCAGAGGGATGGCTGACGAGGGGGTCTTGCTGGAGTTGCGAAGGTCGTT
GCCTGTTTTGAAGACGGTCAGGGCTGTATGTTGAGAGAAGGGAGGGTGGG
AGGAGAGGGAAGCAAGGGAAGGGAGGAGACGAGTGGGCGTGAACAAACTT
GCACAGCAGAGGTCGAAAAGTTGATAGAAGCTTGTATAGAATACTACCAC
ATAAAAGGAGAAGAACGAGAAGAAAAACGAGGAGAAGAAGAAGGAGAGAA
AGGGGGAAGCGAACGAGAATAATCATACTATGTTCAACAAGTCAAAAAAA
ATTTATGGTGAACGGTAGCATGC
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protein sequence of NO13G02510.1

>NO13G02510.1-protein ID=NO13G02510.1-protein|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MGSSLSRTAVTGGSEGGGGEAALMSGHHSCERQEGLDVELRKDKAVPIDV
SCEKSVHGFVTEMYRFSQGGRCRRCRRPKQQQVEDHKQELMTLVDICVDA
ICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTR
LDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGALRHA
NLTGCTGLRFGGLTPFKQCWLMTTLNLSGCRHLMDDALKPLAHLPALQHL
RLRGCRQLTDVALTFLSPLTPQLKTLDLNQGGQFSASALCACLEGLTEIE
FLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQS
NSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRK
INLAHSGLRDVGSLSEFTALEEVNLDSCAIGNAGLSALLPLKKLQRLNLA
DTGISNHGMDVLAALPSLSSLSLFYTNITNTGVQQLSSLKNLTSLNLDSR
ELTDQSLLHISTLTKLEHLDVFSARVSDVGLCFLTSLSGLVSLEICGGKI
TDLGLKYISCLRALRRLNVSQNMRVTNMGLYYLAQMSDLEVLNVSHCQVS
APAALDPLLKMRMLKVLAVNGCRGMADEGVLLELRRSLPVLKTVRAVC*
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Synonyms
Publications