NO13G02510.1, NO13G02510.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02510.1
Unique Name	NO13G02510.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2214
Alignment location	chr13:699045..701767 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:699045..701767 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G02510.1 vs.
Match: EWM21918.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 714.5 bits (1843), Expect = 2.900e-202
Identity = 367/559 (65.65%), Postives = 449/559 (80.32%), Query Frame = 0

Query:   91 MTLVDICVDAICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTRLDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGALRHANLTGCTGLRFGGLTPFKQCWLMTTLNLSGCRHLMDDALKPLAHLPALQHLRLRGCRQLTDVALTFLSPLTPQLKTLDLNQGGQFSASALCACLEGLTEIEFLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQSNSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRKINLAHSGLR--DVGSLSEFTALEEVNLDSCAIGNAGLSALLPLKKLQRLNLADTGISNHGMDVLAALPSLSSLSLFYTNITNTGVQQLSSLKNLTSLNLDSRELTDQSLLHISTLTKLEHLDVFSARVSDVGLCFLTSLSGLVSLEICGGKITDLGLKYISCLRALRRLNVSQNMRVTNMGLYYLAQMSDLEVLNVSHCQVSAPAALDPLLKMRMLKVLAVNGCRGMADEGVLLELRRSLPVLKTVRAV 648
            M+L+D+C+D+IC+ IL YE P  FD LPP+LVRR+ DSL +HKALTKLTL  LR CDVTRLDLS CK V+D WL PF  K+LTHL LA+C  +TDAGLL+LTELG L+ A+LT C GLR GGL  F++ W MT+L L+GCR+L D+A+KPLA+L ALQHLRLRGC QL+D AL  L+PL PQLKTLD+N   QFS++++  C+  + EI  LDLGYCP G+G  ALEVLTRG A  TLQ LILD+SR L+NADL+ LG+   L+ LSLR C +ISDAGLCQLP  LE LD SHCRGVR LP Q L  LR +N AHSGLR  DVGSL+ F AL  +NLDSC+IGN+GL +LLPLKKL+RLNLADTG+SN GMDVLA L SLS +SLFYT+I+++GV+QLS L+NLT LNLD+R+LTD SLLH+S+LTKL  LD+FS+RVSDVGLCF+TSL  LV LEICGG+ITD GL+YIS L +L+RLNVSQN++++N GL++LA + DLE LNVSH QV+AP AL PL ++R LK+LAVNGCRGM D+  L +++ SLP L+TVRAV
Sbjct:    1 MSLIDLCIDSICQNILCYEVPPSFDVLPPDLVRRIFDSLTSHKALTKLTLLPLRYCDVTRLDLSPCKGVTDQWLRPFTDKTLTHLCLAFCNAITDAGLLNLTELGGLQVADLTACAGLRTGGLAAFRESWSMTSLTLNGCRNLTDEAVKPLAYLSALQHLRLRGCWQLSDAALNALAPLMPQLKTLDVNACRQFSSTSISFCVGKMREIRHLDLGYCPRGVGGGALEVLTRGPAPTTLQVLILDSSRSLSNADLFSLGKFRCLQRLSLRNCTTISDAGLCQLPSSLETLDASHCRGVRRLPAQSLPCLRSVNFAHSGLRDSDVGSLAVFPALVNINLDSCSIGNSGLVSLLPLKKLKRLNLADTGVSNGGMDVLAKLSSLSVISLFYTSISDSGVRQLSVLQNLTDLNLDNRDLTDTSLLHLSSLTKLRRLDMFSSRVSDVGLCFITSLVELVDLEICGGRITDKGLEYISQLPSLQRLNVSQNVQISNSGLHHLASLKDLEALNVSHSQVAAPGALKPLCRLRGLKILAVNGCRGM-DDTTLHQIQSSLPNLRTVRAV 558

The following BLAST results are available for this feature:

BLAST of NO13G02510.1 vs.

BLAST of NO13G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21918.1	2.900e-202	65.65	Leucine-rich repeat, cysteine-containing subtype [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G02510	NO13G02510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02510.1	NO13G02510.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02510.1.cds1	NO13G02510.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02510.1.cds2	NO13G02510.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02510.1.cds3	NO13G02510.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02510.1.cds4	NO13G02510.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:699045..701767-
coding sequence from alignment at chr13:699045..701767-

mRNA sequence

>NO13G02510.1 ID=NO13G02510.1|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp
AGCAGCCGTTGAGATTAGCAGCTAGCTAATGGGCAGTAGCTTGTCCAGGA
CAGCCGTCACTGGTGGGTCCGAAGGAGGTGGAGGCGAGGCAGCCCTTATG
TCAGGCCATCACTCCTGCGAGAGGCAGGAAGGGCTGGATGTGGAGCTAAG
AAAAGATAAGGCGGTACCCATCGACGTATCCTGCGAGAAGTCCGTGCATG
GTTTTGTCACGGAGATGTACCGCTTCTCGCAAGGAGGACGTTGTCGCAGA
TGCCGCCGACCCAAGCAGCAGCAAGTGGAAGACCACAAACAAGAACTCAT
GACGCTAGTCGACATCTGCGTCGACGCTATTTGCGAGAAAATTTTGATTT
ACGAGGCCCCGTTGCCCTTTGACTGCCTGCCACCTGAGCTTGTCCGCCGC
CTGTTGGATTCCTTGATGAACCACAAAGCACTCACAAAACTAACGCTCCA
ATCCCTGCGCGACTGCGACGTTACCCGCCTAGATCTCTCCTCCTGCAAAG
ACGTCTCCGACGATTGGCTCGAACCATTCGGTACCAAAAGCTTAACCCAT
TTGTCCCTTGCCTACTGCCCTGGTGTGACCGACGCTGGCCTCCTCCACCT
CACCGAGCTAGGCGCCCTTCGGCATGCAAATCTGACGGGCTGCACGGGCT
TACGCTTCGGGGGCCTAACGCCATTTAAACAGTGTTGGTTAATGACAACG
CTGAATTTGAGTGGGTGTCGTCATCTGATGGATGACGCTCTCAAGCCTCT
GGCACATTTGCCCGCCCTGCAGCATCTCCGATTGCGCGGCTGCCGGCAGC
TGACAGACGTTGCCTTGACTTTCCTTTCCCCCCTCACGCCCCAACTCAAA
ACCCTGGATTTGAACCAAGGAGGGCAGTTTTCAGCATCAGCTCTCTGTGC
ATGTCTGGAGGGATTGACTGAAATTGAGTTTCTGGACCTGGGTTATTGTC
CGGAGGGAATAGGGCGGGAGGCGTTGGAGGTGCTCACCCGGGGCCGGGCC
TCCGCCACCTTGCAAACCTTGATTCTTGATGCCTCTCGAAAGCTGACCAA
CGCCGATTTATACTTGCTGGGACAGTCAAATTCTTTGAGAGTCTTGAGTT
TGCGAGCATGTCCGAGCATAAGCGATGCAGGGCTCTGTCAGTTACCACAG
GGATTGGAAGACTTAGATGTGAGCCATTGTCGAGGGGTTCGACTGTTGCC
CAACCAGATATTGATGAGCTTGAGGAAGATCAATCTTGCACATTCAGGAC
TGAGGGATGTCGGATCGTTGAGTGAGTTTACGGCACTGGAAGAGGTTAAT
CTGGACTCATGCGCCATTGGGAACGCCGGCCTGTCTGCCCTCCTGCCCCT
TAAGAAGCTCCAACGCCTCAATCTAGCTGACACGGGGATCTCCAACCATG
GCATGGACGTCCTCGCCGCCCTCCCCTCCCTCTCCTCCCTCTCGCTGTTC
TACACTAACATCACCAATACTGGCGTCCAGCAGCTGAGCTCCTTAAAAAA
TCTTACCTCTCTTAACCTTGATAGTCGTGAATTGACCGATCAATCACTCT
TGCATATATCGACTCTGACGAAGTTGGAGCATTTAGATGTGTTCTCCGCG
CGTGTGTCCGACGTCGGCTTATGCTTCCTGACCTCTTTGTCTGGGCTGGT
AAGTCTCGAGATATGTGGTGGTAAAATTACGGATTTAGGGTTGAAGTACA
TTTCGTGCTTGCGTGCCTTGAGAAGATTAAATGTGAGCCAAAATATGCGG
GTGACCAACATGGGTTTGTATTATCTCGCGCAAATGAGTGATTTGGAGGT
GCTGAATGTGTCACATTGTCAGGTGTCTGCTCCAGCAGCCCTGGACCCTC
TTCTGAAAATGAGGATGTTGAAAGTGCTGGCAGTGAACGGGTGCAGAGGG
ATGGCTGACGAGGGGGTCTTGCTGGAGTTGCGAAGGTCGTTGCCTGTTTT
GAAGACGGTCAGGGCTGTATGTTGAGAGAAGGGAGGGTGGGAGGAGAGGG
AAGCAAGGGAAGGGAGGAGACGAGTGGGCGTGAACAAACTTGCACAGCAG
AGGTCGAAAAGTTGATAGAAGCTTGTATAGAATACTACCACATAAAAGGA
GAAGAACGAGAAGAAAAACGAGGAGAAGAAGAAGGAGAGAAAGGGGGAAG
CGAACGAGAATAATCATACTATGTTCAACAAGTCAAAAAAAATTTATGGT
GAACGGTAGCATGC

protein sequence of NO13G02510.1

>NO13G02510.1-protein ID=NO13G02510.1-protein|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MGSSLSRTAVTGGSEGGGGEAALMSGHHSCERQEGLDVELRKDKAVPIDV
SCEKSVHGFVTEMYRFSQGGRCRRCRRPKQQQVEDHKQELMTLVDICVDA
ICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTR
LDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGALRHA
NLTGCTGLRFGGLTPFKQCWLMTTLNLSGCRHLMDDALKPLAHLPALQHL
RLRGCRQLTDVALTFLSPLTPQLKTLDLNQGGQFSASALCACLEGLTEIE
FLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQS
NSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRK
INLAHSGLRDVGSLSEFTALEEVNLDSCAIGNAGLSALLPLKKLQRLNLA
DTGISNHGMDVLAALPSLSSLSLFYTNITNTGVQQLSSLKNLTSLNLDSR
ELTDQSLLHISTLTKLEHLDVFSARVSDVGLCFLTSLSGLVSLEICGGKI
TDLGLKYISCLRALRRLNVSQNMRVTNMGLYYLAQMSDLEVLNVSHCQVS
APAALDPLLKMRMLKVLAVNGCRGMADEGVLLELRRSLPVLKTVRAVC*

mRNA from alignment at chr13:699045..701767-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G02510.1 ID=NO13G02510.1|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2723bp|location=Sequence derived from alignment at chr13:699045..701767- (Nannochloropsis oceanica)
AGCAGCCGTTGAGATTAGCAGCTAGCTAATGGGCAGTAGCTTGTCCAGGA
CAGCCGTCACTGGTGGGTCCGAAGGAGGTGGAGGCGAGGCAGCCCTTATG
TCAGGCCATCACTCCTGCGAGAGGCAGGAAGGGCTGGATGTGGAGCTAAG
AAAAGATAAGGCGGTACCCATCGACGTATCCTGCGAGAAGTCCGTGCATG
GTTTTGTCACGGAGATGTACCGCTTCTCGCAAGGAGGACGTTGTCGCAGG
TACGTTGAGAAAAGAGGGAGGAGGTATGGGGGGCGGGGGGAGGTCATCCT
GATCCGACGTGAGATGTGATCACTCGCAGCCACCCTCAGTTGCTTCTGGA
CAGTACCAAAAACAAATTTAATAATACACAAACCAGGGACTCGTAGATGA
TCACGGAAACAGTGCCACTCCAGGCTCGCAGATTAGCTACCCTTGCACAC
GTGTCGTCTCACACACGTTTTGCTCTTTCCACACTCCCCACACCCGAACA
AAGCAGATGCCGCCGACCCAAGCAGCAGCAAGTGGAAGACCACAAACAAG
AACTCATGACGCTAGTCGACATCTGCGTCGACGCTATTTGCGAGAAAATT
TTGATTTACGAGGCCCCGTTGCCCTTTGACTGCCTGCCACCTGAGCTTGT
CCGCCGCCTGTTGGATTCCTTGATGAACCACAAAGCACTCACAAAACTAA
CGGTAGGCGTGAATATAGAGTGTTATTTTCCCCTTTCTATCTCTATTTAA
TTTTTAGATGGAATGCCAAACGTTCTTTTCGTGGTACCCCCTCTTCCCTT
CCCACCAACCACCTGCAGCTCCAATCCCTGCGCGACTGCGACGTTACCCG
CCTAGATCTCTCCTCCTGCAAAGACGTCTCCGACGATTGGCTCGAACCAT
TCGGTACCAAAAGCTTAACCCATTTGTCCCTTGCCTACTGCCCTGGTGTG
ACCGACGCTGGCCTCCTCCACCTCACCGAGCTAGGCGCCCTTCGGCATGC
AAATCTGACGGGCTGCACGGGCTTACGCTTCGGGGGCCTAACGCCATTTA
AACAGTGTTGGTTAATGACAACGCTGAATTTGAGTGGGTGTCGTCATCTG
ATGGATGACGCTCTCAAGCCTCTGGCACATTTGCCCGCCCTGCAGCATCT
CCGATTGCGCGGCTGCCGGCAGCTGACAGACGTTGCCTTGACTTTCCTTT
CCCCCCTCACGCCCCAACTCAAAACCCTGGATTTGAACCAAGGAGGGCAG
TTTTCAGCATCAGCTCTCTGTGCATGTCTGGAGGGATTGACTGAAATTGA
GTTTCTGGACCTGGGTTATTGTCCGGAGGGAATAGGGCGGGAGGCGTTGG
AGGTGCTCACCCGGGGCCGGGCCTCCGCCACCTTGCAAACCTTGATTCTT
GATGCCTCTCGAAAGCTGACCAACGCCGATTTATACTTGCTGGGACAGTC
AAATTCTTTGAGAGTCTTGAGTTTGCGAGCATGTCCGAGCATAAGCGATG
CAGGGCTCTGTCAGTTACCACAGGGATTGGAAGACTTAGATGTGAGCCAT
TGTCGAGGGGTTCGACTGTTGCCCAACCAGATATTGATGAGCTTGAGGAA
GATCAATCTTGCACATTCAGGACTGAGGGATGTCGGATCGTTGAGTGAGT
TTACGGCACTGGAAGAGGTTAATCTGGACTCATGCGCCATTGGTACGGAA
TTGGGGAGGGAGAGATAGGGGAAAGGAAGGAGGAAGGAAGGAAGGAAGGG
GGCTCACCCACTCTGCACGTTAGCTAGGCTTACACCTTTCCTCCCTCCCT
CCCTTTCTACCTCATTCATTTCCGACAGGGAACGCCGGCCTGTCTGCCCT
CCTGCCCCTTAAGAAGCTCCAACGCCTCAATCTAGCTGACACGGGGATCT
CCAACCATGGCATGGACGTCCTCGCCGCCCTCCCCTCCCTCTCCTCCCTC
TCGCTGTTCTACACTAACATCACCAATACTGGCGTCCAGCAGCTGAGCTC
CTTAAAAAATCTTACCTCTCTTAACCTTGATAGTCGTGAATTGACCGATC
AATCACTCTTGCATATATCGACTCTGACGAAGTTGGAGCATTTAGATGTG
TTCTCCGCGCGTGTGTCCGACGTCGGCTTATGCTTCCTGACCTCTTTGTC
TGGGCTGGTAAGTCTCGAGATATGTGGTGGTAAAATTACGGATTTAGGGT
TGAAGTACATTTCGTGCTTGCGTGCCTTGAGAAGATTAAATGTGAGCCAA
AATATGCGGGTGACCAACATGGGTTTGTATTATCTCGCGCAAATGAGTGA
TTTGGAGGTGCTGAATGTGTCACATTGTCAGGTGTCTGCTCCAGCAGCCC
TGGACCCTCTTCTGAAAATGAGGATGTTGAAAGTGCTGGCAGTGAACGGG
TGCAGAGGGATGGCTGACGAGGGGGTCTTGCTGGAGTTGCGAAGGTCGTT
GCCTGTTTTGAAGACGGTCAGGGCTGTATGTTGAGAGAAGGGAGGGTGGG
AGGAGAGGGAAGCAAGGGAAGGGAGGAGACGAGTGGGCGTGAACAAACTT
GCACAGCAGAGGTCGAAAAGTTGATAGAAGCTTGTATAGAATACTACCAC
ATAAAAGGAGAAGAACGAGAAGAAAAACGAGGAGAAGAAGAAGGAGAGAA
AGGGGGAAGCGAACGAGAATAATCATACTATGTTCAACAAGTCAAAAAAA
ATTTATGGTGAACGGTAGCATGC

Coding sequence (CDS) from alignment at chr13:699045..701767-

>NO13G02510.1 ID=NO13G02510.1|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr13:699045..701767- (Nannochloropsis oceanica)
ATGGGCAGTAGCTTGTCCAGGACAGCCGTCACTGGTGGGTCCGAAGGAGG
TGGAGGCGAGGCAGCCCTTATGTCAGGCCATCACTCCTGCGAGAGGCAGG
AAGGGCTGGATGTGGAGCTAAGAAAAGATAAGGCGGTACCCATCGACGTA
TCCTGCGAGAAGTCCGTGCATGGTTTTGTCACGGAGATGTACCGCTTCTC
GCAAGGAGGACGTTGTCGCAGATGCCGCCGACCCAAGCAGCAGCAAGTGG
AAGACCACAAACAAGAACTCATGACGCTAGTCGACATCTGCGTCGACGCT
ATTTGCGAGAAAATTTTGATTTACGAGGCCCCGTTGCCCTTTGACTGCCT
GCCACCTGAGCTTGTCCGCCGCCTGTTGGATTCCTTGATGAACCACAAAG
CACTCACAAAACTAACGCTCCAATCCCTGCGCGACTGCGACGTTACCCGC
CTAGATCTCTCCTCCTGCAAAGACGTCTCCGACGATTGGCTCGAACCATT
CGGTACCAAAAGCTTAACCCATTTGTCCCTTGCCTACTGCCCTGGTGTGA
CCGACGCTGGCCTCCTCCACCTCACCGAGCTAGGCGCCCTTCGGCATGCA
AATCTGACGGGCTGCACGGGCTTACGCTTCGGGGGCCTAACGCCATTTAA
ACAGTGTTGGTTAATGACAACGCTGAATTTGAGTGGGTGTCGTCATCTGA
TGGATGACGCTCTCAAGCCTCTGGCACATTTGCCCGCCCTGCAGCATCTC
CGATTGCGCGGCTGCCGGCAGCTGACAGACGTTGCCTTGACTTTCCTTTC
CCCCCTCACGCCCCAACTCAAAACCCTGGATTTGAACCAAGGAGGGCAGT
TTTCAGCATCAGCTCTCTGTGCATGTCTGGAGGGATTGACTGAAATTGAG
TTTCTGGACCTGGGTTATTGTCCGGAGGGAATAGGGCGGGAGGCGTTGGA
GGTGCTCACCCGGGGCCGGGCCTCCGCCACCTTGCAAACCTTGATTCTTG
ATGCCTCTCGAAAGCTGACCAACGCCGATTTATACTTGCTGGGACAGTCA
AATTCTTTGAGAGTCTTGAGTTTGCGAGCATGTCCGAGCATAAGCGATGC
AGGGCTCTGTCAGTTACCACAGGGATTGGAAGACTTAGATGTGAGCCATT
GTCGAGGGGTTCGACTGTTGCCCAACCAGATATTGATGAGCTTGAGGAAG
ATCAATCTTGCACATTCAGGACTGAGGGATGTCGGATCGTTGAGTGAGTT
TACGGCACTGGAAGAGGTTAATCTGGACTCATGCGCCATTGGGAACGCCG
GCCTGTCTGCCCTCCTGCCCCTTAAGAAGCTCCAACGCCTCAATCTAGCT
GACACGGGGATCTCCAACCATGGCATGGACGTCCTCGCCGCCCTCCCCTC
CCTCTCCTCCCTCTCGCTGTTCTACACTAACATCACCAATACTGGCGTCC
AGCAGCTGAGCTCCTTAAAAAATCTTACCTCTCTTAACCTTGATAGTCGT
GAATTGACCGATCAATCACTCTTGCATATATCGACTCTGACGAAGTTGGA
GCATTTAGATGTGTTCTCCGCGCGTGTGTCCGACGTCGGCTTATGCTTCC
TGACCTCTTTGTCTGGGCTGGTAAGTCTCGAGATATGTGGTGGTAAAATT
ACGGATTTAGGGTTGAAGTACATTTCGTGCTTGCGTGCCTTGAGAAGATT
AAATGTGAGCCAAAATATGCGGGTGACCAACATGGGTTTGTATTATCTCG
CGCAAATGAGTGATTTGGAGGTGCTGAATGTGTCACATTGTCAGGTGTCT
GCTCCAGCAGCCCTGGACCCTCTTCTGAAAATGAGGATGTTGAAAGTGCT
GGCAGTGAACGGGTGCAGAGGGATGGCTGACGAGGGGGTCTTGCTGGAGT
TGCGAAGGTCGTTGCCTGTTTTGAAGACGGTCAGGGCTGTATGTTGA

Synonyms

Publications