NO13G02360, NO13G02360 (gene) Nannochloropsis oceanica

Overview
NameNO13G02360
Unique NameNO13G02360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3872
Alignment locationchr13:656634..660505 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:656634..660505 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02360 vs. NCBI_GenBank
Match: EWM21905.1 (hypothetical protein Naga_100070g29 [Nannochloropsis gaditana])

HSP 1 Score: 443.7 bits (1140), Expect = 4.300e-121
Identity = 228/264 (86.36%), Postives = 249/264 (94.32%), Query Frame = 0 
Query:   29 VDKERTRFREVIHTMQAAPLENVMGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQRAALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDATLKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEVEDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLSDLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ 293
            VD+ER RFREVIHTMQAAP+ENVMGLISSNVPFFLGTNTS+FMQEML+ELD+M+P T V LG GYQVTVEQQR ALVNLFTLTMDFIEGFVSHTQGELRSHQ+VLKEI+EAAQ +S   LDATLKRLRPQFREDFVTYLRGEY+RVSTPPMTE+SVVLANLLQAIQARVLAEVEDMMG+DVSQVSRLLAFSDE+QV TALRGSFLAG+LQP QFLEMVETVL+DLDERMPALLD+G K+EELREMHRKLS+IR FT +Y+AEM+
Sbjct:  119 VDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK 382
The following BLAST results are available for this feature:
BLAST of NO13G02360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21905.14.300e-12186.36hypothetical protein Naga_100070g29 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001656NSK001656Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02360.1NO13G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02360.2NO13G02360.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100070g29gene8534Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02360.1NO13G02360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02360.2NO13G02360.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02360 ID=NO13G02360|Name=NO13G02360|organism=Nannochloropsis oceanica|type=gene|length=3872bp
GCTTGTTTGACACATTATATTTTTCTTTCTGGTTGTTGAATTGGTAGGCT
TCCATCCCATATGCACGCCTGCACATACTTGTTTTCTTTCTCTTATCTGT
CCCCCCAGACAGTGCTCCAAATATCATTAAGGACCTCACGAACGCCCGAA
TCCGCAAACGCTTCCTGCGCTTCCTCCCCTACTTCCTCCGGCATCTCGCC
CGCCTCCTCCCCCTTCTCTTCTCCCCACACTTCTTCCCCACCTTGCTCGC
CTGGTGCCTCACTGCCACTACTACTACTACTCCCCCCCGTGTTAGTCCCC
CCAAATCCCTCTCCCGCTGCCGCAGAAGACGAGGACGATGTGGAGCCCAT
CCCACTATCATCCCCTTCCTCCCCTCCCTCACCATCCTCTCCCCCTTCGT
CGCCAGCGCCTGCTCCCCCAGCCCCCATACCAATCGGAACGCCCATCCCC
AGTCCTCCTCCGCGCGGAACCCTGGAAGCGATGGAAGCGACCACACGGTC
AAAAGGCATGCTCTGCAAGAAAACAGTGCCCGGCCCCGTAAGCGAAGTCA
TAAACAAACCCTCACCCCCAAACATCACATTCTTCACGCCCTTCATCATT
TGGACGTCGTAACTCACGCTAGGAGCGAATGCTACAAGCGCTCCGGAGGT
AACCCGCAACGTCTCTCCCTCGGCCAGCTCCCGTCGAATCAGAGCGCCTC
CGGCCTTGATAAACGCGTCGCCTTGCCCTGTCAGCCGCTGCAACACAAAA
CCTTCCCCACCGAAGAACCCAGTCTTGAAGCTTTTTGTGAACTCCATCTC
CATCCCAGTCAAATGTGTCCCACACAAAAATGCACCCTTTTGACAAATGA
GCGCGCCGCCGTAATCAGCCAGTGTGACTCGGATCACCTTACTAGGGAAT
TCCGTACCTAGCGCCACCGTACCCGCGGTGCCCTCCTCCCCATGGTATTT
GAAGTCGGAGATGAACATGCTTTCACCAGTCATGTATCGTTTAAGTCCTG
CCGACAGCCCCCCGCCAAGAGAAGTCTCCAACTCTACACCGTCTGTCATG
TACAACAACGAGCCCGTTTCTGCTCTCAAAATCTGCCCGGGTTCGAGGTC
GACCATGACTATCTGCGTCTCGGCGCCTTCGATCCGAGAGGACACGTCAA
AATCGATTGGTTTGGCCAACGCTAACTCCTCATCTTGCTTCTTTGCCAGC
AGAGCCTTATCCTTGTCTGCCCCGCTCAGGCCATTGAAGATGCTCCGACG
TGCGATGACGACGCCCCCTAGGAAAGCCTCCGGCGCTCTGGAAGCTGGTT
TTGGGGTCACCAGTTGCGTAAGAATTCGTTGAGCGGAGAGGCGACTACGT
GTTAAAGAGATTATGCCGCGGCCACCACTGTGGCGCATCGCGGGGACCAG
CATGTTGACGACGCACGGGTTTCCAAGTGTTCCTGCTAGTCTGTCTAGTA
TTGGAGTAAAGGACGGGATGAAACTTTGGTGTAATCCTCTCCACTGAGTG
CTGACGCCTGGCGAGACGGGCAAGAGATTGTGATGCAGGTACTTGTCGTG
AGTTGTGGAACGTCTGGCAGCATATATCAGTCAGATGAAAAGGGTTTGCG
TCGCGTTGCGGCTTCGTGCCGCATTGGACGTTGTGGGGAGGTTGCACTTC
TGCCCTCCTCAAGTGACCAACAATTAATCGATCAAAAAAATCATGTCCTC
GTCCACAACAACACAGCATACGCTCAGACAACATTTCTGCTTGCGTCTTA
GTAGCTACTGTTAGTTCCCGTCTCCGGTCGCTGTCAAGACCCCTAGCTAG
CCAGAGGATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGAC
CATCGAGTGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTA
CTATCAGTCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGC
CGGTTTCTTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCAT
CCTCCTGTCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGAT
TACGGAGAGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAG
TACTAGCGGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGG
AGACGATGCAGCTCCTCTTCTCGCCAGATAAACGCCAGGGTACGTAAGAG
TGGGTAGTTAAGCTTGTGGTGAGCGCCTCGGCACATATGTGGAAAGAGCA
AAAAATTCTGTTCTAATATAAAAGCTGCGCTCTTTGTCATCATGTTTTGG
CGTTCAGTTCTTTCCATTGATGATTGAGAAGCGCATGATCAACATGGTGA
TAATTCATATGCCGTATCTGTCTTGTGTATGTGCAGGATTCCTGCATTCT
TCCCAAAAGATCCCGTCGTCGGTCACTCGTATCATCCTTCTTCTCTCCTC
CTCTTTCTCACAGTCGACAAGGAGCGAACCCGGTTCCGCGAGGTCATCCA
CACGATGCAAGCCGCACCGCTGGAAAATGTCATGGGCCTTATCTCGTCCA
ACGTACCTTTTTTCCTCGGCACCAACACTTCGATTTTCATGCAAGAAATG
CTGGACGAATTGGATGCCATGGAGCCTAGAACGGTGGTGGCCCTTGGGAA
CGGATATCAGGTCACGGTGGAGCAACAGCGGGCGGCGTTGGTCAATTTGT
TTACGCTGACAATGGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGC
GAGCTCCGATCACACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACA
GAATGgtacggatatatatcttgtagatgcactgctcttcgtttctctcc
gtgtgacacttttctctacaaagtctcgccttcttttgagcctctttcat
ccatatttttctcccacaacatccaaaaaacagAGTCTAAGGAAGCTTTA
GACGCGACCTTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCAC
ATACCTCCGAGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGG
AATCGGTGGTGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTG
GCGGAAGTGGAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCT
TCTGGCATTTTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCAT
TTTTAGCAGGCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACG
GTGCTGAGCGATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCAC
CAAGAACGAGGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGA
CATTTACGGCGGAATACATGGCGGAGATGCAGTAGTAATTCTTTCTCATG
CAGTTTCCTACAATCCTAAAATTATCGCGTGCCAAGAGAAGTTTATGATG
CCACTTGTGGGCCTGGAAAGTTACTGGAAATGTAGACAAGGAATTCCGAG
GAGTTCCTTTATTCGACCAAGACGAGATACATAGATGATGGAGACCCCAA
CTCGGGCACGTAGGGTGTGAGGCACGCTCCTCGTTGCAGGCACGCAGGAG
CGCCACATCTATTGCCACCCACGACCACTGCCGCTGCTGGCCTCTACCAG
GGATCTTGCTGCTGCTGCCACTGCTGCTACTGGTGCTATCGTTGCTGCTG
GTTCTCCTTGTTACTTAGGTGGCTGTAAGCCGTCTGTGTGTGGAAGGCTG
TAGGGGGATGTTGGAAGAAAGGACGGCGACGTGTGTTTGTGCAAAAAATG
GGAAGGCGAGGAGTGACAAAACGACAAATGAAAGCACAAAGAAATGTAAG
GAGGAAATCTCGCATTTTGATT
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protein sequence of NO13G02360.1

>NO13G02360.1-protein ID=NO13G02360.1-protein|Name=NO13G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MTIPQQRQRQWRPRPSSAARRQSFSTHFMQVLSVLSTVLLLSCLDMTAGF
LVPTLDRPGRACSSSSCPSATTTTKLVMSADYGEGEFVKRRSISRSDSTS
GRGNSTRAKLPPMKETMQLLFSPDKRQVDKERTRFREVIHTMQAAPLENV
MGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQR
AALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDAT
LKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEV
EDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLS
DLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ*
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protein sequence of NO13G02360.2

>NO13G02360.2-protein ID=NO13G02360.2-protein|Name=NO13G02360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MCRIPAFFPKDPVVGHSYHPSSLLLFLTVDKERTRFREVIHTMQAAPLEN
VMGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQ
RAALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDA
TLKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAE
VEDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVL
SDLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ*
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Synonyms
Publications