NO13G02360.2, NO13G02360.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02360.2
Unique NameNO13G02360.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3744
Alignment locationchr13:656634..660505 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:656634..660505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02360.2 vs.
Match: EWM21905.1 (hypothetical protein Naga_100070g29 [Nannochloropsis gaditana])

HSP 1 Score: 443.7 bits (1140), Expect = 4.300e-121
Identity = 228/264 (86.36%), Postives = 249/264 (94.32%), Query Frame = 0 
Query:   29 VDKERTRFREVIHTMQAAPLENVMGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQRAALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDATLKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEVEDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLSDLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ 293
            VD+ER RFREVIHTMQAAP+ENVMGLISSNVPFFLGTNTS+FMQEML+ELD+M+P T V LG GYQVTVEQQR ALVNLFTLTMDFIEGFVSHTQGELRSHQ+VLKEI+EAAQ +S   LDATLKRLRPQFREDFVTYLRGEY+RVSTPPMTE+SVVLANLLQAIQARVLAEVEDMMG+DVSQVSRLLAFSDE+QV TALRGSFLAG+LQP QFLEMVETVL+DLDERMPALLD+G K+EELREMHRKLS+IR FT +Y+AEM+
Sbjct:  119 VDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK 382
The following BLAST results are available for this feature:
BLAST of NO13G02360.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21905.14.300e-12186.36hypothetical protein Naga_100070g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02360NO13G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02360.2NO13G02360.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02360.2.cds1NO13G02360.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02360.2.cds2NO13G02360.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02360.2 ID=NO13G02360.2|Name=NO13G02360.2|organism=Nannochloropsis oceanica|type=mRNA|length=3744bp
GCTTGTTTGACACATTATATTTTTCTTTCTGGTTGTTGAATTGGTAGGCT
TCCATCCCATATGCACGCCTGCACATACTTGTTTTCTTTCTCTTATCTGT
CCCCCCAGACAGTGCTCCAAATATCATTAAGGACCTCACGAACGCCCGAA
TCCGCAAACGCTTCCTGCGCTTCCTCCCCTACTTCCTCCGGCATCTCGCC
CGCCTCCTCCCCCTTCTCTTCTCCCCACACTTCTTCCCCACCTTGCTCGC
CTGGTGCCTCACTGCCACTACTACTACTACTCCCCCCCGTGTTAGTCCCC
CCAAATCCCTCTCCCGCTGCCGCAGAAGACGAGGACGATGTGGAGCCCAT
CCCACTATCATCCCCTTCCTCCCCTCCCTCACCATCCTCTCCCCCTTCGT
CGCCAGCGCCTGCTCCCCCAGCCCCCATACCAATCGGAACGCCCATCCCC
AGTCCTCCTCCGCGCGGAACCCTGGAAGCGATGGAAGCGACCACACGGTC
AAAAGGCATGCTCTGCAAGAAAACAGTGCCCGGCCCCGTAAGCGAAGTCA
TAAACAAACCCTCACCCCCAAACATCACATTCTTCACGCCCTTCATCATT
TGGACGTCGTAACTCACGCTAGGAGCGAATGCTACAAGCGCTCCGGAGGT
AACCCGCAACGTCTCTCCCTCGGCCAGCTCCCGTCGAATCAGAGCGCCTC
CGGCCTTGATAAACGCGTCGCCTTGCCCTGTCAGCCGCTGCAACACAAAA
CCTTCCCCACCGAAGAACCCAGTCTTGAAGCTTTTTGTGAACTCCATCTC
CATCCCAGTCAAATGTGTCCCACACAAAAATGCACCCTTTTGACAAATGA
GCGCGCCGCCGTAATCAGCCAGTGTGACTCGGATCACCTTACTAGGGAAT
TCCGTACCTAGCGCCACCGTACCCGCGGTGCCCTCCTCCCCATGGTATTT
GAAGTCGGAGATGAACATGCTTTCACCAGTCATGTATCGTTTAAGTCCTG
CCGACAGCCCCCCGCCAAGAGAAGTCTCCAACTCTACACCGTCTGTCATG
TACAACAACGAGCCCGTTTCTGCTCTCAAAATCTGCCCGGGTTCGAGGTC
GACCATGACTATCTGCGTCTCGGCGCCTTCGATCCGAGAGGACACGTCAA
AATCGATTGGTTTGGCCAACGCTAACTCCTCATCTTGCTTCTTTGCCAGC
AGAGCCTTATCCTTGTCTGCCCCGCTCAGGCCATTGAAGATGCTCCGACG
TGCGATGACGACGCCCCCTAGGAAAGCCTCCGGCGCTCTGGAAGCTGGTT
TTGGGGTCACCAGTTGCGTAAGAATTCGTTGAGCGGAGAGGCGACTACGT
GTTAAAGAGATTATGCCGCGGCCACCACTGTGGCGCATCGCGGGGACCAG
CATGTTGACGACGCACGGGTTTCCAAGTGTTCCTGCTAGTCTGTCTAGTA
TTGGAGTAAAGGACGGGATGAAACTTTGGTGTAATCCTCTCCACTGAGTG
CTGACGCCTGGCGAGACGGGCAAGAGATTGTGATGCAGGTACTTGTCGTG
AGTTGTGGAACGTCTGGCAGCATATATCAGTCAGATGAAAAGGGTTTGCG
TCGCGTTGCGGCTTCGTGCCGCATTGGACGTTGTGGGGAGGTTGCACTTC
TGCCCTCCTCAAGTGACCAACAATTAATCGATCAAAAAAATCATGTCCTC
GTCCACAACAACACAGCATACGCTCAGACAACATTTCTGCTTGCGTCTTA
GTAGCTACTGTTAGTTCCCGTCTCCGGTCGCTGTCAAGACCCCTAGCTAG
CCAGAGGATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGAC
CATCGAGTGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTA
CTATCAGTCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGC
CGGTTTCTTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCAT
CCTCCTGTCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGAT
TACGGAGAGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAG
TACTAGCGGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGG
AGACGATGCAGCTCCTCTTCTCGCCAGATAAACGCCAGGGTACGTAAGAG
TGGGTAGTTAAGCTTGTGGTGAGCGCCTCGGCACATATGTGGAAAGAGCA
AAAAATTCTGTTCTAATATAAAAGCTGCGCTCTTTGTCATCATGTTTTGG
CGTTCAGTTCTTTCCATTGATGATTGAGAAGCGCATGATCAACATGGTGA
TAATTCATATGCCGTATCTGTCTTGTGTATGTGCAGGATTCCTGCATTCT
TCCCAAAAGATCCCGTCGTCGGTCACTCGTATCATCCTTCTTCTCTCCTC
CTCTTTCTCACAGTCGACAAGGAGCGAACCCGGTTCCGCGAGGTCATCCA
CACGATGCAAGCCGCACCGCTGGAAAATGTCATGGGCCTTATCTCGTCCA
ACGTACCTTTTTTCCTCGGCACCAACACTTCGATTTTCATGCAAGAAATG
CTGGACGAATTGGATGCCATGGAGCCTAGAACGGTGGTGGCCCTTGGGAA
CGGATATCAGGTCACGGTGGAGCAACAGCGGGCGGCGTTGGTCAATTTGT
TTACGCTGACAATGGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGC
GAGCTCCGATCACACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACA
GAATGAGTCTAAGGAAGCTTTAGACGCGACCTTGAAGCGATTGCGGCCTC
AGTTTCGTGAGGACTTTGTCACATACCTCCGAGGCGAGTACGACCGCGTC
TCTACGCCGCCGATGACTGAGGAATCGGTGGTGCTGGCCAATTTGTTGCA
GGCCATCCAGGCACGGGTCCTGGCGGAAGTGGAGGATATGATGGGCGCTG
ATGTTAGCCAGGTTTCTCGGCTTCTGGCATTTTCTGACGAGAAGCAAGTG
GCCACGGCCTTGAGGGGGTCATTTTTAGCAGGCACATTGCAGCCTGCCCA
GTTTTTGGAGATGGTAGAGACGGTGCTGAGCGATTTGGACGAGCGGATGC
CGGCCTTGTTGGATGCTGGCACCAAGAACGAGGAGTTGCGGGAGATGCAT
CGAAAGCTAAGTTCAATCCGGACATTTACGGCGGAATACATGGCGGAGAT
GCAGTAGTAATTCTTTCTCATGCAGTTTCCTACAATCCTAAAATTATCGC
GTGCCAAGAGAAGTTTATGATGCCACTTGTGGGCCTGGAAAGTTACTGGA
AATGTAGACAAGGAATTCCGAGGAGTTCCTTTATTCGACCAAGACGAGAT
ACATAGATGATGGAGACCCCAACTCGGGCACGTAGGGTGTGAGGCACGCT
CCTCGTTGCAGGCACGCAGGAGCGCCACATCTATTGCCACCCACGACCAC
TGCCGCTGCTGGCCTCTACCAGGGATCTTGCTGCTGCTGCCACTGCTGCT
ACTGGTGCTATCGTTGCTGCTGGTTCTCCTTGTTACTTAGGTGGCTGTAA
GCCGTCTGTGTGTGGAAGGCTGTAGGGGGATGTTGGAAGAAAGGACGGCG
ACGTGTGTTTGTGCAAAAAATGGGAAGGCGAGGAGTGACAAAACGACAAA
TGAAAGCACAAAGAAATGTAAGGAGGAAATCTCGCATTTTGATT
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protein sequence of NO13G02360.2

>NO13G02360.2-protein ID=NO13G02360.2-protein|Name=NO13G02360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MCRIPAFFPKDPVVGHSYHPSSLLLFLTVDKERTRFREVIHTMQAAPLEN
VMGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQ
RAALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDA
TLKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAE
VEDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVL
SDLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ*
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mRNA from alignment at chr13:656634..660505+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02360.2 ID=NO13G02360.2|Name=NO13G02360.2|organism=Nannochloropsis oceanica|type=mRNA|length=3872bp|location=Sequence derived from alignment at chr13:656634..660505+ (Nannochloropsis oceanica)
GCTTGTTTGACACATTATATTTTTCTTTCTGGTTGTTGAATTGGTAGGCT
TCCATCCCATATGCACGCCTGCACATACTTGTTTTCTTTCTCTTATCTGT
CCCCCCAGACAGTGCTCCAAATATCATTAAGGACCTCACGAACGCCCGAA
TCCGCAAACGCTTCCTGCGCTTCCTCCCCTACTTCCTCCGGCATCTCGCC
CGCCTCCTCCCCCTTCTCTTCTCCCCACACTTCTTCCCCACCTTGCTCGC
CTGGTGCCTCACTGCCACTACTACTACTACTCCCCCCCGTGTTAGTCCCC
CCAAATCCCTCTCCCGCTGCCGCAGAAGACGAGGACGATGTGGAGCCCAT
CCCACTATCATCCCCTTCCTCCCCTCCCTCACCATCCTCTCCCCCTTCGT
CGCCAGCGCCTGCTCCCCCAGCCCCCATACCAATCGGAACGCCCATCCCC
AGTCCTCCTCCGCGCGGAACCCTGGAAGCGATGGAAGCGACCACACGGTC
AAAAGGCATGCTCTGCAAGAAAACAGTGCCCGGCCCCGTAAGCGAAGTCA
TAAACAAACCCTCACCCCCAAACATCACATTCTTCACGCCCTTCATCATT
TGGACGTCGTAACTCACGCTAGGAGCGAATGCTACAAGCGCTCCGGAGGT
AACCCGCAACGTCTCTCCCTCGGCCAGCTCCCGTCGAATCAGAGCGCCTC
CGGCCTTGATAAACGCGTCGCCTTGCCCTGTCAGCCGCTGCAACACAAAA
CCTTCCCCACCGAAGAACCCAGTCTTGAAGCTTTTTGTGAACTCCATCTC
CATCCCAGTCAAATGTGTCCCACACAAAAATGCACCCTTTTGACAAATGA
GCGCGCCGCCGTAATCAGCCAGTGTGACTCGGATCACCTTACTAGGGAAT
TCCGTACCTAGCGCCACCGTACCCGCGGTGCCCTCCTCCCCATGGTATTT
GAAGTCGGAGATGAACATGCTTTCACCAGTCATGTATCGTTTAAGTCCTG
CCGACAGCCCCCCGCCAAGAGAAGTCTCCAACTCTACACCGTCTGTCATG
TACAACAACGAGCCCGTTTCTGCTCTCAAAATCTGCCCGGGTTCGAGGTC
GACCATGACTATCTGCGTCTCGGCGCCTTCGATCCGAGAGGACACGTCAA
AATCGATTGGTTTGGCCAACGCTAACTCCTCATCTTGCTTCTTTGCCAGC
AGAGCCTTATCCTTGTCTGCCCCGCTCAGGCCATTGAAGATGCTCCGACG
TGCGATGACGACGCCCCCTAGGAAAGCCTCCGGCGCTCTGGAAGCTGGTT
TTGGGGTCACCAGTTGCGTAAGAATTCGTTGAGCGGAGAGGCGACTACGT
GTTAAAGAGATTATGCCGCGGCCACCACTGTGGCGCATCGCGGGGACCAG
CATGTTGACGACGCACGGGTTTCCAAGTGTTCCTGCTAGTCTGTCTAGTA
TTGGAGTAAAGGACGGGATGAAACTTTGGTGTAATCCTCTCCACTGAGTG
CTGACGCCTGGCGAGACGGGCAAGAGATTGTGATGCAGGTACTTGTCGTG
AGTTGTGGAACGTCTGGCAGCATATATCAGTCAGATGAAAAGGGTTTGCG
TCGCGTTGCGGCTTCGTGCCGCATTGGACGTTGTGGGGAGGTTGCACTTC
TGCCCTCCTCAAGTGACCAACAATTAATCGATCAAAAAAATCATGTCCTC
GTCCACAACAACACAGCATACGCTCAGACAACATTTCTGCTTGCGTCTTA
GTAGCTACTGTTAGTTCCCGTCTCCGGTCGCTGTCAAGACCCCTAGCTAG
CCAGAGGATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGAC
CATCGAGTGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTA
CTATCAGTCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGC
CGGTTTCTTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCAT
CCTCCTGTCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGAT
TACGGAGAGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAG
TACTAGCGGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGG
AGACGATGCAGCTCCTCTTCTCGCCAGATAAACGCCAGGGTACGTAAGAG
TGGGTAGTTAAGCTTGTGGTGAGCGCCTCGGCACATATGTGGAAAGAGCA
AAAAATTCTGTTCTAATATAAAAGCTGCGCTCTTTGTCATCATGTTTTGG
CGTTCAGTTCTTTCCATTGATGATTGAGAAGCGCATGATCAACATGGTGA
TAATTCATATGCCGTATCTGTCTTGTGTATGTGCAGGATTCCTGCATTCT
TCCCAAAAGATCCCGTCGTCGGTCACTCGTATCATCCTTCTTCTCTCCTC
CTCTTTCTCACAGTCGACAAGGAGCGAACCCGGTTCCGCGAGGTCATCCA
CACGATGCAAGCCGCACCGCTGGAAAATGTCATGGGCCTTATCTCGTCCA
ACGTACCTTTTTTCCTCGGCACCAACACTTCGATTTTCATGCAAGAAATG
CTGGACGAATTGGATGCCATGGAGCCTAGAACGGTGGTGGCCCTTGGGAA
CGGATATCAGGTCACGGTGGAGCAACAGCGGGCGGCGTTGGTCAATTTGT
TTACGCTGACAATGGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGC
GAGCTCCGATCACACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACA
GAATGGTACGGATATATATCTTGTAGATGCACTGCTCTTCGTTTCTCTCC
GTGTGACACTTTTCTCTACAAAGTCTCGCCTTCTTTTGAGCCTCTTTCAT
CCATATTTTTCTCCCACAACATCCAAAAAACAGAGTCTAAGGAAGCTTTA
GACGCGACCTTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCAC
ATACCTCCGAGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGG
AATCGGTGGTGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTG
GCGGAAGTGGAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCT
TCTGGCATTTTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCAT
TTTTAGCAGGCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACG
GTGCTGAGCGATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCAC
CAAGAACGAGGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGA
CATTTACGGCGGAATACATGGCGGAGATGCAGTAGTAATTCTTTCTCATG
CAGTTTCCTACAATCCTAAAATTATCGCGTGCCAAGAGAAGTTTATGATG
CCACTTGTGGGCCTGGAAAGTTACTGGAAATGTAGACAAGGAATTCCGAG
GAGTTCCTTTATTCGACCAAGACGAGATACATAGATGATGGAGACCCCAA
CTCGGGCACGTAGGGTGTGAGGCACGCTCCTCGTTGCAGGCACGCAGGAG
CGCCACATCTATTGCCACCCACGACCACTGCCGCTGCTGGCCTCTACCAG
GGATCTTGCTGCTGCTGCCACTGCTGCTACTGGTGCTATCGTTGCTGCTG
GTTCTCCTTGTTACTTAGGTGGCTGTAAGCCGTCTGTGTGTGGAAGGCTG
TAGGGGGATGTTGGAAGAAAGGACGGCGACGTGTGTTTGTGCAAAAAATG
GGAAGGCGAGGAGTGACAAAACGACAAATGAAAGCACAAAGAAATGTAAG
GAGGAAATCTCGCATTTTGATT
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Coding sequence (CDS) from alignment at chr13:656634..660505+

>NO13G02360.2 ID=NO13G02360.2|Name=NO13G02360.2|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr13:656634..660505+ (Nannochloropsis oceanica)
ATGTGCAGGATTCCTGCATTCTTCCCAAAAGATCCCGTCGTCGGTCACTC
GTATCATCCTTCTTCTCTCCTCCTCTTTCTCACAGTCGACAAGGAGCGAA
CCCGGTTCCGCGAGGTCATCCACACGATGCAAGCCGCACCGCTGGAAAAT
GTCATGGGCCTTATCTCGTCCAACGTACCTTTTTTCCTCGGCACCAACAC
TTCGATTTTCATGCAAGAAATGCTGGACGAATTGGATGCCATGGAGCCTA
GAACGGTGGTGGCCCTTGGGAACGGATATCAGGTCACGGTGGAGCAACAG
CGGGCGGCGTTGGTCAATTTGTTTACGCTGACAATGGACTTTATAGAGGG
TTTTGTTTCCCACACTCAGGGCGAGCTCCGATCACACCAGAGCGTCTTGA
AAGAGATTTTGGAGGCGGCACAGAATGAGTCTAAGGAAGCTTTAGACGCG
ACCTTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCACATACCT
CCGAGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGGAATCGG
TGGTGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTGGCGGAA
GTGGAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCTTCTGGC
ATTTTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCATTTTTAG
CAGGCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACGGTGCTG
AGCGATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCACCAAGAA
CGAGGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGACATTTA
CGGCGGAATACATGGCGGAGATGCAGTAG
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Synonyms
Publications