|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:656634..660505 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02360.1 vs.
Match: EWM21905.1 (hypothetical protein Naga_100070g29 [Nannochloropsis gaditana]) HSP 1 Score: 498.8 bits (1283), Expect = 1.500e-137 Identity = 271/358 (75.70%), Postives = 303/358 (84.64%), Query Frame = 0
Query: 38 VLLLSCLDMTAGFLVPTLDRPGRACSSSSCPSATTTTKLVMSADYGEGEFVKRRSISRSDSTSGRGNST----RAKLPPMKETMQLLFSPDKRQVDKERTRFREVIHTMQAAPLENVMGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQRAALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDATLKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEVEDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLSDLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ 392
+++ SC+ +T GFL+P R A S T SAD G EF++ + S+ G GNST R+KLPPMKETMQLLFSPDKRQVD+ER RFREVIHTMQAAP+ENVMGLISSNVPFFLGTNTS+FMQEML+ELD+M+P T V LG GYQVTVEQQR ALVNLFTLTMDFIEGFVSHTQGELRSHQ+VLKEI+EAAQ +S LDATLKRLRPQFREDFVTYLRGEY+RVSTPPMTE+SVVLANLLQAIQARVLAEVEDMMG+DVSQVSRLLAFSDE+QV TALRGSFLAG+LQP QFLEMVETVL+DLDERMPALLD+G K+EELREMHRKLS+IR FT +Y+AEM+
Sbjct: 30 IVMYSCIALTRGFLMPA-PRGSSALHSVPFREFARTEGKAASADPG-AEFMRH---GKGSSSEGAGNSTATRSRSKLPPMKETMQLLFSPDKRQVDQERARFREVIHTMQAAPMENVMGLISSNVPFFLGTNTSLFMQEMLEELDSMDPATPVPLGGGYQVTVEQQRTALVNLFTLTMDFIEGFVSHTQGELRSHQAVLKEIMEAAQKKSSAELDATLKRLRPQFREDFVTYLRGEYERVSTPPMTEDSVVLANLLQAIQARVLAEVEDMMGSDVSQVSRLLAFSDEEQVVTALRGSFLAGSLQPDQFLEMVETVLADLDERMPALLDSGNKDEELREMHRKLSAIRAFTVDYVAEMK 382
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02360.1 ID=NO13G02360.1|Name=NO13G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3470bp GCTTGTTTGACACATTATATTTTTCTTTCTGGTTGTTGAATTGGTAGGCT TCCATCCCATATGCACGCCTGCACATACTTGTTTTCTTTCTCTTATCTGT CCCCCCAGACAGTGCTCCAAATATCATTAAGGACCTCACGAACGCCCGAA TCCGCAAACGCTTCCTGCGCTTCCTCCCCTACTTCCTCCGGCATCTCGCC CGCCTCCTCCCCCTTCTCTTCTCCCCACACTTCTTCCCCACCTTGCTCGC CTGGTGCCTCACTGCCACTACTACTACTACTCCCCCCCGTGTTAGTCCCC CCAAATCCCTCTCCCGCTGCCGCAGAAGACGAGGACGATGTGGAGCCCAT CCCACTATCATCCCCTTCCTCCCCTCCCTCACCATCCTCTCCCCCTTCGT CGCCAGCGCCTGCTCCCCCAGCCCCCATACCAATCGGAACGCCCATCCCC AGTCCTCCTCCGCGCGGAACCCTGGAAGCGATGGAAGCGACCACACGGTC AAAAGGCATGCTCTGCAAGAAAACAGTGCCCGGCCCCGTAAGCGAAGTCA TAAACAAACCCTCACCCCCAAACATCACATTCTTCACGCCCTTCATCATT TGGACGTCGTAACTCACGCTAGGAGCGAATGCTACAAGCGCTCCGGAGGT AACCCGCAACGTCTCTCCCTCGGCCAGCTCCCGTCGAATCAGAGCGCCTC CGGCCTTGATAAACGCGTCGCCTTGCCCTGTCAGCCGCTGCAACACAAAA CCTTCCCCACCGAAGAACCCAGTCTTGAAGCTTTTTGTGAACTCCATCTC CATCCCAGTCAAATGTGTCCCACACAAAAATGCACCCTTTTGACAAATGA GCGCGCCGCCGTAATCAGCCAGTGTGACTCGGATCACCTTACTAGGGAAT TCCGTACCTAGCGCCACCGTACCCGCGGTGCCCTCCTCCCCATGGTATTT GAAGTCGGAGATGAACATGCTTTCACCAGTCATGTATCGTTTAAGTCCTG CCGACAGCCCCCCGCCAAGAGAAGTCTCCAACTCTACACCGTCTGTCATG TACAACAACGAGCCCGTTTCTGCTCTCAAAATCTGCCCGGGTTCGAGGTC GACCATGACTATCTGCGTCTCGGCGCCTTCGATCCGAGAGGACACGTCAA AATCGATTGGTTTGGCCAACGCTAACTCCTCATCTTGCTTCTTTGCCAGC AGAGCCTTATCCTTGTCTGCCCCGCTCAGGCCATTGAAGATGCTCCGACG TGCGATGACGACGCCCCCTAGGAAAGCCTCCGGCGCTCTGGAAGCTGGTT TTGGGGTCACCAGTTGCGTAAGAATTCGTTGAGCGGAGAGGCGACTACGT GTTAAAGAGATTATGCCGCGGCCACCACTGTGGCGCATCGCGGGGACCAG CATGTTGACGACGCACGGGTTTCCAAGTGTTCCTGCTAGTCTGTCTAGTA TTGGAGTAAAGGACGGGATGAAACTTTGGTGTAATCCTCTCCACTGAGTG CTGACGCCTGGCGAGACGGGCAAGAGATTGTGATGCAGGTACTTGTCGTG AGTTGTGGAACGTCTGGCAGCATATATCAGTCAGATGAAAAGGGTTTGCG TCGCGTTGCGGCTTCGTGCCGCATTGGACGTTGTGGGGAGGTTGCACTTC TGCCCTCCTCAAGTGACCAACAATTAATCGATCAAAAAAATCATGTCCTC GTCCACAACAACACAGCATACGCTCAGACAACATTTCTGCTTGCGTCTTA GTAGCTACTGTTAGTTCCCGTCTCCGGTCGCTGTCAAGACCCCTAGCTAG CCAGAGGATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGAC CATCGAGTGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTA CTATCAGTCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGC CGGTTTCTTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCAT CCTCCTGTCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGAT TACGGAGAGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAG TACTAGCGGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGG AGACGATGCAGCTCCTCTTCTCGCCAGATAAACGCCAGGTCGACAAGGAG CGAACCCGGTTCCGCGAGGTCATCCACACGATGCAAGCCGCACCGCTGGA AAATGTCATGGGCCTTATCTCGTCCAACGTACCTTTTTTCCTCGGCACCA ACACTTCGATTTTCATGCAAGAAATGCTGGACGAATTGGATGCCATGGAG CCTAGAACGGTGGTGGCCCTTGGGAACGGATATCAGGTCACGGTGGAGCA ACAGCGGGCGGCGTTGGTCAATTTGTTTACGCTGACAATGGACTTTATAG AGGGTTTTGTTTCCCACACTCAGGGCGAGCTCCGATCACACCAGAGCGTC TTGAAAGAGATTTTGGAGGCGGCACAGAATGAGTCTAAGGAAGCTTTAGA CGCGACCTTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCACAT ACCTCCGAGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGGAA TCGGTGGTGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTGGC GGAAGTGGAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCTTC TGGCATTTTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCATTT TTAGCAGGCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACGGT GCTGAGCGATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCACCA AGAACGAGGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGACA TTTACGGCGGAATACATGGCGGAGATGCAGTAGTAATTCTTTCTCATGCA GTTTCCTACAATCCTAAAATTATCGCGTGCCAAGAGAAGTTTATGATGCC ACTTGTGGGCCTGGAAAGTTACTGGAAATGTAGACAAGGAATTCCGAGGA GTTCCTTTATTCGACCAAGACGAGATACATAGATGATGGAGACCCCAACT CGGGCACGTAGGGTGTGAGGCACGCTCCTCGTTGCAGGCACGCAGGAGCG CCACATCTATTGCCACCCACGACCACTGCCGCTGCTGGCCTCTACCAGGG ATCTTGCTGCTGCTGCCACTGCTGCTACTGGTGCTATCGTTGCTGCTGGT TCTCCTTGTTACTTAGGTGGCTGTAAGCCGTCTGTGTGTGGAAGGCTGTA GGGGGATGTTGGAAGAAAGGACGGCGACGTGTGTTTGTGCAAAAAATGGG AAGGCGAGGAGTGACAAAACGACAAATGAAAGCACAAAGAAATGTAAGGA GGAAATCTCGCATTTTGATT back to topprotein sequence of NO13G02360.1 >NO13G02360.1-protein ID=NO13G02360.1-protein|Name=NO13G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp MTIPQQRQRQWRPRPSSAARRQSFSTHFMQVLSVLSTVLLLSCLDMTAGF LVPTLDRPGRACSSSSCPSATTTTKLVMSADYGEGEFVKRRSISRSDSTS GRGNSTRAKLPPMKETMQLLFSPDKRQVDKERTRFREVIHTMQAAPLENV MGLISSNVPFFLGTNTSIFMQEMLDELDAMEPRTVVALGNGYQVTVEQQR AALVNLFTLTMDFIEGFVSHTQGELRSHQSVLKEILEAAQNESKEALDAT LKRLRPQFREDFVTYLRGEYDRVSTPPMTEESVVLANLLQAIQARVLAEV EDMMGADVSQVSRLLAFSDEKQVATALRGSFLAGTLQPAQFLEMVETVLS DLDERMPALLDAGTKNEELREMHRKLSSIRTFTAEYMAEMQ* back to topmRNA from alignment at chr13:656634..660505+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02360.1 ID=NO13G02360.1|Name=NO13G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3872bp|location=Sequence derived from alignment at chr13:656634..660505+ (Nannochloropsis oceanica) GCTTGTTTGACACATTATATTTTTCTTTCTGGTTGTTGAATTGGTAGGCT
TCCATCCCATATGCACGCCTGCACATACTTGTTTTCTTTCTCTTATCTGT
CCCCCCAGACAGTGCTCCAAATATCATTAAGGACCTCACGAACGCCCGAA
TCCGCAAACGCTTCCTGCGCTTCCTCCCCTACTTCCTCCGGCATCTCGCC
CGCCTCCTCCCCCTTCTCTTCTCCCCACACTTCTTCCCCACCTTGCTCGC
CTGGTGCCTCACTGCCACTACTACTACTACTCCCCCCCGTGTTAGTCCCC
CCAAATCCCTCTCCCGCTGCCGCAGAAGACGAGGACGATGTGGAGCCCAT
CCCACTATCATCCCCTTCCTCCCCTCCCTCACCATCCTCTCCCCCTTCGT
CGCCAGCGCCTGCTCCCCCAGCCCCCATACCAATCGGAACGCCCATCCCC
AGTCCTCCTCCGCGCGGAACCCTGGAAGCGATGGAAGCGACCACACGGTC
AAAAGGCATGCTCTGCAAGAAAACAGTGCCCGGCCCCGTAAGCGAAGTCA
TAAACAAACCCTCACCCCCAAACATCACATTCTTCACGCCCTTCATCATT
TGGACGTCGTAACTCACGCTAGGAGCGAATGCTACAAGCGCTCCGGAGGT
AACCCGCAACGTCTCTCCCTCGGCCAGCTCCCGTCGAATCAGAGCGCCTC
CGGCCTTGATAAACGCGTCGCCTTGCCCTGTCAGCCGCTGCAACACAAAA
CCTTCCCCACCGAAGAACCCAGTCTTGAAGCTTTTTGTGAACTCCATCTC
CATCCCAGTCAAATGTGTCCCACACAAAAATGCACCCTTTTGACAAATGA
GCGCGCCGCCGTAATCAGCCAGTGTGACTCGGATCACCTTACTAGGGAAT
TCCGTACCTAGCGCCACCGTACCCGCGGTGCCCTCCTCCCCATGGTATTT
GAAGTCGGAGATGAACATGCTTTCACCAGTCATGTATCGTTTAAGTCCTG
CCGACAGCCCCCCGCCAAGAGAAGTCTCCAACTCTACACCGTCTGTCATG
TACAACAACGAGCCCGTTTCTGCTCTCAAAATCTGCCCGGGTTCGAGGTC
GACCATGACTATCTGCGTCTCGGCGCCTTCGATCCGAGAGGACACGTCAA
AATCGATTGGTTTGGCCAACGCTAACTCCTCATCTTGCTTCTTTGCCAGC
AGAGCCTTATCCTTGTCTGCCCCGCTCAGGCCATTGAAGATGCTCCGACG
TGCGATGACGACGCCCCCTAGGAAAGCCTCCGGCGCTCTGGAAGCTGGTT
TTGGGGTCACCAGTTGCGTAAGAATTCGTTGAGCGGAGAGGCGACTACGT
GTTAAAGAGATTATGCCGCGGCCACCACTGTGGCGCATCGCGGGGACCAG
CATGTTGACGACGCACGGGTTTCCAAGTGTTCCTGCTAGTCTGTCTAGTA
TTGGAGTAAAGGACGGGATGAAACTTTGGTGTAATCCTCTCCACTGAGTG
CTGACGCCTGGCGAGACGGGCAAGAGATTGTGATGCAGGTACTTGTCGTG
AGTTGTGGAACGTCTGGCAGCATATATCAGTCAGATGAAAAGGGTTTGCG
TCGCGTTGCGGCTTCGTGCCGCATTGGACGTTGTGGGGAGGTTGCACTTC
TGCCCTCCTCAAGTGACCAACAATTAATCGATCAAAAAAATCATGTCCTC
GTCCACAACAACACAGCATACGCTCAGACAACATTTCTGCTTGCGTCTTA
GTAGCTACTGTTAGTTCCCGTCTCCGGTCGCTGTCAAGACCCCTAGCTAG
CCAGAGGATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGAC
CATCGAGTGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTA
CTATCAGTCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGC
CGGTTTCTTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCAT
CCTCCTGTCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGAT
TACGGAGAGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAG
TACTAGCGGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGG
AGACGATGCAGCTCCTCTTCTCGCCAGATAAACGCCAGGGTACGTAAGAG
TGGGTAGTTAAGCTTGTGGTGAGCGCCTCGGCACATATGTGGAAAGAGCA
AAAAATTCTGTTCTAATATAAAAGCTGCGCTCTTTGTCATCATGTTTTGG
CGTTCAGTTCTTTCCATTGATGATTGAGAAGCGCATGATCAACATGGTGA
TAATTCATATGCCGTATCTGTCTTGTGTATGTGCAGGATTCCTGCATTCT
TCCCAAAAGATCCCGTCGTCGGTCACTCGTATCATCCTTCTTCTCTCCTC
CTCTTTCTCACAGTCGACAAGGAGCGAACCCGGTTCCGCGAGGTCATCCA
CACGATGCAAGCCGCACCGCTGGAAAATGTCATGGGCCTTATCTCGTCCA
ACGTACCTTTTTTCCTCGGCACCAACACTTCGATTTTCATGCAAGAAATG
CTGGACGAATTGGATGCCATGGAGCCTAGAACGGTGGTGGCCCTTGGGAA
CGGATATCAGGTCACGGTGGAGCAACAGCGGGCGGCGTTGGTCAATTTGT
TTACGCTGACAATGGACTTTATAGAGGGTTTTGTTTCCCACACTCAGGGC
GAGCTCCGATCACACCAGAGCGTCTTGAAAGAGATTTTGGAGGCGGCACA
GAATGGTACGGATATATATCTTGTAGATGCACTGCTCTTCGTTTCTCTCC
GTGTGACACTTTTCTCTACAAAGTCTCGCCTTCTTTTGAGCCTCTTTCAT
CCATATTTTTCTCCCACAACATCCAAAAAACAGAGTCTAAGGAAGCTTTA
GACGCGACCTTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCAC
ATACCTCCGAGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGG
AATCGGTGGTGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTG
GCGGAAGTGGAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCT
TCTGGCATTTTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCAT
TTTTAGCAGGCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACG
GTGCTGAGCGATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCAC
CAAGAACGAGGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGA
CATTTACGGCGGAATACATGGCGGAGATGCAGTAGTAATTCTTTCTCATG
CAGTTTCCTACAATCCTAAAATTATCGCGTGCCAAGAGAAGTTTATGATG
CCACTTGTGGGCCTGGAAAGTTACTGGAAATGTAGACAAGGAATTCCGAG
GAGTTCCTTTATTCGACCAAGACGAGATACATAGATGATGGAGACCCCAA
CTCGGGCACGTAGGGTGTGAGGCACGCTCCTCGTTGCAGGCACGCAGGAG
CGCCACATCTATTGCCACCCACGACCACTGCCGCTGCTGGCCTCTACCAG
GGATCTTGCTGCTGCTGCCACTGCTGCTACTGGTGCTATCGTTGCTGCTG
GTTCTCCTTGTTACTTAGGTGGCTGTAAGCCGTCTGTGTGTGGAAGGCTG
TAGGGGGATGTTGGAAGAAAGGACGGCGACGTGTGTTTGTGCAAAAAATG
GGAAGGCGAGGAGTGACAAAACGACAAATGAAAGCACAAAGAAATGTAAG
GAGGAAATCTCGCATTTTGATT back to topCoding sequence (CDS) from alignment at chr13:656634..660505+ >NO13G02360.1 ID=NO13G02360.1|Name=NO13G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr13:656634..660505+ (Nannochloropsis oceanica) ATGACGATACCACAGCAGCGCCAGCGGCAGTGGCGTCCAAGACCATCGAG TGCTGCACGCCGCCAGTCCTTCTCAACACACTTCATGCAGGTACTATCAG TCTTAAGTACCGTCCTCCTGCTATCATGCCTGGATATGACGGCCGGTTTC TTAGTGCCGACCCTAGATAGACCTGGACGGGCATGTTCGTCATCCTCCTG TCCTTCCGCGACCACTACCACAAAGCTGGTCATGTCTGCAGATTACGGAG AGGGTGAATTCGTGAAGCGCCGAAGTATAAGCAGAAGCGACAGTACTAGC GGTCGAGGAAATAGCACGCGGGCGAAGCTCCCGCCCATGAAGGAGACGAT GCAGCTCCTCTTCTCGCCAGATAAACGCCAGGTCGACAAGGAGCGAACCC GGTTCCGCGAGGTCATCCACACGATGCAAGCCGCACCGCTGGAAAATGTC ATGGGCCTTATCTCGTCCAACGTACCTTTTTTCCTCGGCACCAACACTTC GATTTTCATGCAAGAAATGCTGGACGAATTGGATGCCATGGAGCCTAGAA CGGTGGTGGCCCTTGGGAACGGATATCAGGTCACGGTGGAGCAACAGCGG GCGGCGTTGGTCAATTTGTTTACGCTGACAATGGACTTTATAGAGGGTTT TGTTTCCCACACTCAGGGCGAGCTCCGATCACACCAGAGCGTCTTGAAAG AGATTTTGGAGGCGGCACAGAATGAGTCTAAGGAAGCTTTAGACGCGACC TTGAAGCGATTGCGGCCTCAGTTTCGTGAGGACTTTGTCACATACCTCCG AGGCGAGTACGACCGCGTCTCTACGCCGCCGATGACTGAGGAATCGGTGG TGCTGGCCAATTTGTTGCAGGCCATCCAGGCACGGGTCCTGGCGGAAGTG GAGGATATGATGGGCGCTGATGTTAGCCAGGTTTCTCGGCTTCTGGCATT TTCTGACGAGAAGCAAGTGGCCACGGCCTTGAGGGGGTCATTTTTAGCAG GCACATTGCAGCCTGCCCAGTTTTTGGAGATGGTAGAGACGGTGCTGAGC GATTTGGACGAGCGGATGCCGGCCTTGTTGGATGCTGGCACCAAGAACGA GGAGTTGCGGGAGATGCATCGAAAGCTAAGTTCAATCCGGACATTTACGG CGGAATACATGGCGGAGATGCAGTAG back to top
|