NO12G03840, NO12G03840 (gene) Nannochloropsis oceanica

Overview
NameNO12G03840
Unique NameNO12G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2376
Alignment locationchr12:1073765..1076140 -

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-protein ligase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1073765..1076140 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016874ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
Homology
[Close]
BLAST of NO12G03840 vs. NCBI_GenBank
Match: EWM25652.1 (ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 317.8 bits (813), Expect = 4.800e-83
Identity = 190/367 (51.77%), Postives = 217/367 (59.13%), Query Frame = 0 
Query:    1 MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKAKLMKQQEDFRREKAAGGTKANSEVEGGXXXXXXXXKIEEETPLPPGWEAVLDPGGSGDSYYWHPATNATTWTKPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAITSNLPPGWKEVKHAATGQVVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGLGGGNDRMADSTAGGSLWQQRPLPAPGAVL 368
            MA++Q  L+QGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLS+HKDNTL++LREREL ++R+ K+AQ EA LKAKL++QQE+FR+EKA G  K + E +G            + TPLP GWEAV+DP GSGD YYWH  TN TTW +P                                                            +LP GWKEVKHAATGQ+ YVH AS +KRWS+PT A D++SDIQQTRQ H +                                                 +QGLGGG DRMADSTAGGSLWQQRPLPAPGAVL
Sbjct:   50 MASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATG--KGDLEGQGSVE--------RDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRAND--LGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLE-------AARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGG-DRMADSTAGGSLWQQRPLPAPGAVL 396
[Close]
BLAST of NO12G03840 vs. NCBI_GenBank
Match: EWM25653.1 (ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 268.1 bits (684), Expect = 4.300e-68
Identity = 162/334 (48.50%), Postives = 186/334 (55.69%), Query Frame = 0 
Query:   34 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKAKLMKQQEDFRREKAAGGTKANSEVEGGXXXXXXXXKIEEETPLPPGWEAVLDPGGSGDSYYWHPATNATTWTKPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAITSNLPPGWKEVKHAATGQVVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQGLGGGNDRMADSTAGGSLWQQRPLPAPGAVL 368
            KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLS+HKDNTL++LREREL ++R+ K+AQ EA LKAKL++QQE+FR+EKA G  K + E +G            + TPLP GWEAV+DP GSGD YYWH  TN TTW +P                                                            +LP GWKEVKHAATGQ+ YVH AS +KRWS+PT A D++SDIQQTRQ H +                                                 +QGLGGG DRMADSTAGGSLWQQRPLPAPGAVL
Sbjct:    9 KGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATG--KGDLEGQGSVE--------RDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRAND--LGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLE-------AARQAELAQTGAKGGKDGGGKKRGREEIDPLDPTGGRGSGGWTQGLGGG-DRMADSTAGGSLWQQRPLPAPGAVL 322
[Close]
BLAST of NO12G03840 vs. NCBI_GenBank
Match: XP_005852617.1 (growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526] >EKU23216.1 growth arrest-specific 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 230.7 bits (587), Expect = 7.700e-57
Identity = 123/174 (70.69%), Postives = 142/174 (81.61%), Query Frame = 0 
Query:    1 MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKAKLMKQQEDFRREKAAGGTKANSEVEGGXXXXXXXXKIEEETPLPPGWEAVLDPGGSGDSYYWHPATNATTWTKP 175
            MA++Q  L+QGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLS+HKDNTL++LREREL ++R+ K+AQ EA LKAKL++QQE+FR+EKA G  K + E +G            + TPLP GWEAV+DP GSGD YYWH  TN TTW +P
Sbjct:   44 MASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATG--KGDVEGQGSVE--------RDSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERP 207
The following BLAST results are available for this feature:
BLAST of NO12G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25652.14.800e-8351.77ubiquitin-protein ligase [Nannochloropsis gaditana... [more]
EWM25653.14.300e-6848.50ubiquitin-protein ligase [Nannochloropsis gaditana... [more]
XP_005852617.17.700e-5770.69growth arrest-specific 7, partial [Nannochloropsis... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010368NSK010368Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03840.1NO12G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671585gene_5560Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100500g2gene4859Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03840.1NO12G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03840 ID=NO12G03840|Name=NO12G03840|organism=Nannochloropsis oceanica|type=gene|length=2376bp
GCCCTCCCACGCCCGCTTGCCTGTGTTTGGATGGGAGGTGCAATAGGTCG
GGTTGGCGCACGGAAGGCGGATAGATTGATGCGACACCTTCTTGGATGAA
AATTTTCACACGTTGACTGACTGTATAAGGGACAATCGCGCCCCGACGAG
TTGACAAAGACGAAGGAAGGACTGAAGCGTATGCCTGCGGGTGCACCGGA
CGGACGTGTGAGCCACAATAGGTGATCTGTGGAATGAGGGGGTAGGGAGG
GGGAGGAAGCCTCGCAGGAGTTCGCGCCTTGTTTCGGGGCTGCCACCACA
AAGCTGTGCTCTGTGCGCCATAAAGCCCTTGCTTCACACACTGTGAGAAG
TCTTCATTGATCCCGGTCCAACTTCGAGCCCCAATCGTTGTCACTACTGT
ATCCAGGCGCCGCTACTTAAGGCGAGGCATCGGCTGCATCATCGCTCCTC
CCTCCTCCTTTCCTTCTTCACGTGCTCTGGGCAACACCATAACACACAAA
CCATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAG
GAGCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGA
TAAAGgtacgccctagagcatctatctgtctccttttagtggggggttgg
agagggggggaggtcaacctcgttgttatcgtattattccagtaaatggt
tttggttgacgtattgttttcggccgctctctagtgaggcgtattacctt
tcgtccagacttgtgagtgtcctcctctttttgatcttcccgtgttcagc
agcctgaggcagttaatggtatgctcccattggtcctccttgtgcagcgg
gtccttaaatattgtcctttgtcgcctctcctcctcttgtcgttcaccta
ctcccaccataaatacctctcattgtcagattctctcacctcgcctctcc
tccttctccctccctcaccatacccccccccagGCTGTATGAATGTTTCG
GTCACGGAGCGCGTCCTTAATCGCGGCACCTACTCAGGAGCGGAAGCCGA
AGAGCTGGCCATTGCGGCGGGAGGAGGTCTGTCAATACACAAGGACAACA
CGCTCCAAGTACTTAGAGAGAGGGAGCTGACCAAGAAGCGGAAGGAGAAG
GAGGCACAGAGCGAGGCTGCTTTGAAGGCGAAATTGATGAAGCAACAAGA
GGACTTCAGGAGGGAAAAAGCGGCGGGTGGGACTAAAGCCAACTCAGAGG
TAGAAGGAGGACAAGGAGGACAAGGAGGAAAGAAGAAAATCGAGGAAGAA
ACGCCATTGCCGCCGGGGTGGGAGGCTGTGCTAGACCCGGGAGGTTCCGG
AGACAGCTATTACTGGCACCCTGCTACCAATGCCACCACCTGGACCAAGC
CTGTTGGAGCAGTACCAGCAGCAGCAACAGTGGCAACAGTGACGAGCATC
AACAAGGATGCGAGGAGCAACGGTTTGGGCGGCAGTACGGCGACTACCAC
CACCAGCACCATAGCTGCTTTGGGTGCCGTCGTTGGAGGGGCAGGTGAAG
GAGGGGTAGGAGGTCATAGCGCGATCACAAGCAACCTCCCCCCGGGATGG
AAGGAGGTGAAACACGCGGCAACGGGCCAAGTGGTCTATGTCCATGAGGC
GAGCAACATGAAGAGGTGGAGCAAACCCACCGCTGCTGATGACCTCTCTT
CTGACATCCAGCAAACGAGGCAGGCACACGCAGACGCTGCCAGGCAAGAA
AAACAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCGTGGCAGTGGAGGAGG
GAAGAACAAGAAGAGGGGGAGGGAGGGGGTGGAGGAGGTCGACCCAATGG
ACCCGACGGGGGGGAAGGGAGGAGGAGGGTGGTCACAGGGATTGGGGGGA
GGGAATGACCGCATGGCGGACAGCACTGCGGGTGGAAGTCTATGGCAGCA
GCGGCCTTTGCCCGCACCGGGGGCTGTTTTGAGAAAGCAGGGTGGAGGGG
GAAGGGGGGGGGGAGGAGGGCATCAGCAAGGACCGACTTGGAGACGGTGA
GGGGTTGGAAATGGAGTTGGTTGTATGACAAAGAGAGAGGAGAAGGAGGG
AGGAGGAAGAGGGTGTGTTTTTCATTCCTTCTCTCGTTTACTTTGCCTCT
GGTTTGTCCGCGTCTATACAACCAGTAAAAACAGGAACTTCCTCCAAGGC
GCGGGTCAGATAGCCAGAAGAAGATGGTATACATTCGGGGATGGATGAGG
AAGGATGAAGAGAGGGGAGGGAAGGAGGGATGGAAGGGGGCGCGACGGAA
AGTAGTGTGCCCCTCTGTAAAGAGAGAGTGTCGATAAGTCAGTCACGAAC
CAAAAAAAAGTATTCCATTTCTCGTT
back to top

protein sequence of NO12G03840.1

>NO12G03840.1-protein ID=NO12G03840.1-protein|Name=NO12G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGT
YSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKA
KLMKQQEDFRREKAAGGTKANSEVEGGQGGQGGKKKIEEETPLPPGWEAV
LDPGGSGDSYYWHPATNATTWTKPVGAVPAAATVATVTSINKDARSNGLG
GSTATTTTSTIAALGAVVGGAGEGGVGGHSAITSNLPPGWKEVKHAATGQ
VVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADAARQEKQQQQQQQEQ
QRGSGGGKNKKRGREGVEEVDPMDPTGGKGGGGWSQGLGGGNDRMADSTA
GGSLWQQRPLPAPGAVLRKQGGGGRGGGGGHQQGPTWRR*
back to top
Synonyms
Publications