NO12G03840.1, NO12G03840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03840.1
Unique NameNO12G03840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1998
Alignment locationchr12:1073765..1076140 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1073765..1076140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03840.1 vs.
Match: EWM25652.1 (ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 389.4 bits (999), Expect = 1.300e-104
Identity = 242/392 (61.73%), Postives = 282/392 (71.94%), Query Frame = 0 
Query:    1 MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKAKLMKQQEDFRREKAAGGTKANSEVEGGQGGQGGKKKIEEETPLPPGWEAVLDPGGSGDSYYWHPATNATTWTKPVGAVPAAATVAT--VTSINKDARSNGLGGSTATTTTSTIAALGAVVGGAGEGGVGGHSAIT-SNLPPGWKEVKHAATGQVVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADAARQEKQQQQQQQEQQRGSGGGKNKKRGREGVEEVDPMDPTGGKGGGGWSQGLGGGNDRMADSTAGGSLWQQRPLPAPGAVLRKQGGGGRGGGGGHQQGPTWRR 390
            MA++Q  L+QGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLS+HKDNTL++LREREL ++R+ K+AQ EA LKAKL++QQE+FR+EKA G        +G   GQG  ++  + TPLP GWEAV+DP GSGD YYWH  TN TTW +P   +P A       VT++      N   GS  ++ TS     G      G GG     A    +LP GWKEVKHAATGQ+ YVH AS +KRWS+PT A D++SDIQQTRQ H +AARQ     +  Q   +G   G  KKRGRE   E+DP+DPTGG+G GGW+QGLGGG DRMADSTAGGSLWQQRPLPAPGAVL+KQ GGGRG G G+Q     RR
Sbjct:   50 MASQQRALLQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGTYSGAEAEELAIAAGGGLSVHKDNTLEILRERELGRQRQAKDAQKEANLKAKLLQQQENFRKEKATG--------KGDLEGQGSVER--DSTPLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLK-----NHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQA----ELAQTGAKGGKDGGGKKRGRE---EIDPLDPTGGRGSGGWTQGLGGG-DRMADSTAGGSLWQQRPLPAPGAVLKKQ-GGGRGAGRGNQGQYPMRR 417
The following BLAST results are available for this feature:
BLAST of NO12G03840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25652.11.300e-10461.73ubiquitin-protein ligase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03840NO12G03840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03840.1NO12G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03840.1.cds1NO12G03840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03840.1.cds2NO12G03840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03840.1 ID=NO12G03840.1|Name=NO12G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp
GCCCTCCCACGCCCGCTTGCCTGTGTTTGGATGGGAGGTGCAATAGGTCG
GGTTGGCGCACGGAAGGCGGATAGATTGATGCGACACCTTCTTGGATGAA
AATTTTCACACGTTGACTGACTGTATAAGGGACAATCGCGCCCCGACGAG
TTGACAAAGACGAAGGAAGGACTGAAGCGTATGCCTGCGGGTGCACCGGA
CGGACGTGTGAGCCACAATAGGTGATCTGTGGAATGAGGGGGTAGGGAGG
GGGAGGAAGCCTCGCAGGAGTTCGCGCCTTGTTTCGGGGCTGCCACCACA
AAGCTGTGCTCTGTGCGCCATAAAGCCCTTGCTTCACACACTGTGAGAAG
TCTTCATTGATCCCGGTCCAACTTCGAGCCCCAATCGTTGTCACTACTGT
ATCCAGGCGCCGCTACTTAAGGCGAGGCATCGGCTGCATCATCGCTCCTC
CCTCCTCCTTTCCTTCTTCACGTGCTCTGGGCAACACCATAACACACAAA
CCATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAG
GAGCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGA
TAAAGGCTGTATGAATGTTTCGGTCACGGAGCGCGTCCTTAATCGCGGCA
CCTACTCAGGAGCGGAAGCCGAAGAGCTGGCCATTGCGGCGGGAGGAGGT
CTGTCAATACACAAGGACAACACGCTCCAAGTACTTAGAGAGAGGGAGCT
GACCAAGAAGCGGAAGGAGAAGGAGGCACAGAGCGAGGCTGCTTTGAAGG
CGAAATTGATGAAGCAACAAGAGGACTTCAGGAGGGAAAAAGCGGCGGGT
GGGACTAAAGCCAACTCAGAGGTAGAAGGAGGACAAGGAGGACAAGGAGG
AAAGAAGAAAATCGAGGAAGAAACGCCATTGCCGCCGGGGTGGGAGGCTG
TGCTAGACCCGGGAGGTTCCGGAGACAGCTATTACTGGCACCCTGCTACC
AATGCCACCACCTGGACCAAGCCTGTTGGAGCAGTACCAGCAGCAGCAAC
AGTGGCAACAGTGACGAGCATCAACAAGGATGCGAGGAGCAACGGTTTGG
GCGGCAGTACGGCGACTACCACCACCAGCACCATAGCTGCTTTGGGTGCC
GTCGTTGGAGGGGCAGGTGAAGGAGGGGTAGGAGGTCATAGCGCGATCAC
AAGCAACCTCCCCCCGGGATGGAAGGAGGTGAAACACGCGGCAACGGGCC
AAGTGGTCTATGTCCATGAGGCGAGCAACATGAAGAGGTGGAGCAAACCC
ACCGCTGCTGATGACCTCTCTTCTGACATCCAGCAAACGAGGCAGGCACA
CGCAGACGCTGCCAGGCAAGAAAAACAGCAGCAGCAGCAGCAGCAAGAGC
AGCAGCGTGGCAGTGGAGGAGGGAAGAACAAGAAGAGGGGGAGGGAGGGG
GTGGAGGAGGTCGACCCAATGGACCCGACGGGGGGGAAGGGAGGAGGAGG
GTGGTCACAGGGATTGGGGGGAGGGAATGACCGCATGGCGGACAGCACTG
CGGGTGGAAGTCTATGGCAGCAGCGGCCTTTGCCCGCACCGGGGGCTGTT
TTGAGAAAGCAGGGTGGAGGGGGAAGGGGGGGGGGAGGAGGGCATCAGCA
AGGACCGACTTGGAGACGGTGAGGGGTTGGAAATGGAGTTGGTTGTATGA
CAAAGAGAGAGGAGAAGGAGGGAGGAGGAAGAGGGTGTGTTTTTCATTCC
TTCTCTCGTTTACTTTGCCTCTGGTTTGTCCGCGTCTATACAACCAGTAA
AAACAGGAACTTCCTCCAAGGCGCGGGTCAGATAGCCAGAAGAAGATGGT
ATACATTCGGGGATGGATGAGGAAGGATGAAGAGAGGGGAGGGAAGGAGG
GATGGAAGGGGGCGCGACGGAAAGTAGTGTGCCCCTCTGTAAAGAGAGAG
TGTCGATAAGTCAGTCACGAACCAAAAAAAAGTATTCCATTTCTCGTT
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protein sequence of NO12G03840.1

>NO12G03840.1-protein ID=NO12G03840.1-protein|Name=NO12G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MANKQHPLMQGDRLAKELAAQQARAAARAYVTDKGCMNVSVTERVLNRGT
YSGAEAEELAIAAGGGLSIHKDNTLQVLRERELTKKRKEKEAQSEAALKA
KLMKQQEDFRREKAAGGTKANSEVEGGQGGQGGKKKIEEETPLPPGWEAV
LDPGGSGDSYYWHPATNATTWTKPVGAVPAAATVATVTSINKDARSNGLG
GSTATTTTSTIAALGAVVGGAGEGGVGGHSAITSNLPPGWKEVKHAATGQ
VVYVHEASNMKRWSKPTAADDLSSDIQQTRQAHADAARQEKQQQQQQQEQ
QRGSGGGKNKKRGREGVEEVDPMDPTGGKGGGGWSQGLGGGNDRMADSTA
GGSLWQQRPLPAPGAVLRKQGGGGRGGGGGHQQGPTWRR*
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mRNA from alignment at chr12:1073765..1076140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03840.1 ID=NO12G03840.1|Name=NO12G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2376bp|location=Sequence derived from alignment at chr12:1073765..1076140- (Nannochloropsis oceanica)
GCCCTCCCACGCCCGCTTGCCTGTGTTTGGATGGGAGGTGCAATAGGTCG
GGTTGGCGCACGGAAGGCGGATAGATTGATGCGACACCTTCTTGGATGAA
AATTTTCACACGTTGACTGACTGTATAAGGGACAATCGCGCCCCGACGAG
TTGACAAAGACGAAGGAAGGACTGAAGCGTATGCCTGCGGGTGCACCGGA
CGGACGTGTGAGCCACAATAGGTGATCTGTGGAATGAGGGGGTAGGGAGG
GGGAGGAAGCCTCGCAGGAGTTCGCGCCTTGTTTCGGGGCTGCCACCACA
AAGCTGTGCTCTGTGCGCCATAAAGCCCTTGCTTCACACACTGTGAGAAG
TCTTCATTGATCCCGGTCCAACTTCGAGCCCCAATCGTTGTCACTACTGT
ATCCAGGCGCCGCTACTTAAGGCGAGGCATCGGCTGCATCATCGCTCCTC
CCTCCTCCTTTCCTTCTTCACGTGCTCTGGGCAACACCATAACACACAAA
CCATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAG
GAGCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGA
TAAAGGTACGCCCTAGAGCATCTATCTGTCTCCTTTTAGTGGGGGGTTGG
AGAGGGGGGGAGGTCAACCTCGTTGTTATCGTATTATTCCAGTAAATGGT
TTTGGTTGACGTATTGTTTTCGGCCGCTCTCTAGTGAGGCGTATTACCTT
TCGTCCAGACTTGTGAGTGTCCTCCTCTTTTTGATCTTCCCGTGTTCAGC
AGCCTGAGGCAGTTAATGGTATGCTCCCATTGGTCCTCCTTGTGCAGCGG
GTCCTTAAATATTGTCCTTTGTCGCCTCTCCTCCTCTTGTCGTTCACCTA
CTCCCACCATAAATACCTCTCATTGTCAGATTCTCTCACCTCGCCTCTCC
TCCTTCTCCCTCCCTCACCATACCCCCCCCCAGGCTGTATGAATGTTTCG
GTCACGGAGCGCGTCCTTAATCGCGGCACCTACTCAGGAGCGGAAGCCGA
AGAGCTGGCCATTGCGGCGGGAGGAGGTCTGTCAATACACAAGGACAACA
CGCTCCAAGTACTTAGAGAGAGGGAGCTGACCAAGAAGCGGAAGGAGAAG
GAGGCACAGAGCGAGGCTGCTTTGAAGGCGAAATTGATGAAGCAACAAGA
GGACTTCAGGAGGGAAAAAGCGGCGGGTGGGACTAAAGCCAACTCAGAGG
TAGAAGGAGGACAAGGAGGACAAGGAGGAAAGAAGAAAATCGAGGAAGAA
ACGCCATTGCCGCCGGGGTGGGAGGCTGTGCTAGACCCGGGAGGTTCCGG
AGACAGCTATTACTGGCACCCTGCTACCAATGCCACCACCTGGACCAAGC
CTGTTGGAGCAGTACCAGCAGCAGCAACAGTGGCAACAGTGACGAGCATC
AACAAGGATGCGAGGAGCAACGGTTTGGGCGGCAGTACGGCGACTACCAC
CACCAGCACCATAGCTGCTTTGGGTGCCGTCGTTGGAGGGGCAGGTGAAG
GAGGGGTAGGAGGTCATAGCGCGATCACAAGCAACCTCCCCCCGGGATGG
AAGGAGGTGAAACACGCGGCAACGGGCCAAGTGGTCTATGTCCATGAGGC
GAGCAACATGAAGAGGTGGAGCAAACCCACCGCTGCTGATGACCTCTCTT
CTGACATCCAGCAAACGAGGCAGGCACACGCAGACGCTGCCAGGCAAGAA
AAACAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCGTGGCAGTGGAGGAGG
GAAGAACAAGAAGAGGGGGAGGGAGGGGGTGGAGGAGGTCGACCCAATGG
ACCCGACGGGGGGGAAGGGAGGAGGAGGGTGGTCACAGGGATTGGGGGGA
GGGAATGACCGCATGGCGGACAGCACTGCGGGTGGAAGTCTATGGCAGCA
GCGGCCTTTGCCCGCACCGGGGGCTGTTTTGAGAAAGCAGGGTGGAGGGG
GAAGGGGGGGGGGAGGAGGGCATCAGCAAGGACCGACTTGGAGACGGTGA
GGGGTTGGAAATGGAGTTGGTTGTATGACAAAGAGAGAGGAGAAGGAGGG
AGGAGGAAGAGGGTGTGTTTTTCATTCCTTCTCTCGTTTACTTTGCCTCT
GGTTTGTCCGCGTCTATACAACCAGTAAAAACAGGAACTTCCTCCAAGGC
GCGGGTCAGATAGCCAGAAGAAGATGGTATACATTCGGGGATGGATGAGG
AAGGATGAAGAGAGGGGAGGGAAGGAGGGATGGAAGGGGGCGCGACGGAA
AGTAGTGTGCCCCTCTGTAAAGAGAGAGTGTCGATAAGTCAGTCACGAAC
CAAAAAAAAGTATTCCATTTCTCGTT
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Coding sequence (CDS) from alignment at chr12:1073765..1076140-

>NO12G03840.1 ID=NO12G03840.1|Name=NO12G03840.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr12:1073765..1076140- (Nannochloropsis oceanica)
ATGGCCAACAAGCAGCACCCACTCATGCAAGGCGACCGCCTGGCCAAGGA
GCTCGCAGCACAGCAGGCGAGGGCAGCGGCGCGCGCGTATGTGACAGATA
AAGGCTGTATGAATGTTTCGGTCACGGAGCGCGTCCTTAATCGCGGCACC
TACTCAGGAGCGGAAGCCGAAGAGCTGGCCATTGCGGCGGGAGGAGGTCT
GTCAATACACAAGGACAACACGCTCCAAGTACTTAGAGAGAGGGAGCTGA
CCAAGAAGCGGAAGGAGAAGGAGGCACAGAGCGAGGCTGCTTTGAAGGCG
AAATTGATGAAGCAACAAGAGGACTTCAGGAGGGAAAAAGCGGCGGGTGG
GACTAAAGCCAACTCAGAGGTAGAAGGAGGACAAGGAGGACAAGGAGGAA
AGAAGAAAATCGAGGAAGAAACGCCATTGCCGCCGGGGTGGGAGGCTGTG
CTAGACCCGGGAGGTTCCGGAGACAGCTATTACTGGCACCCTGCTACCAA
TGCCACCACCTGGACCAAGCCTGTTGGAGCAGTACCAGCAGCAGCAACAG
TGGCAACAGTGACGAGCATCAACAAGGATGCGAGGAGCAACGGTTTGGGC
GGCAGTACGGCGACTACCACCACCAGCACCATAGCTGCTTTGGGTGCCGT
CGTTGGAGGGGCAGGTGAAGGAGGGGTAGGAGGTCATAGCGCGATCACAA
GCAACCTCCCCCCGGGATGGAAGGAGGTGAAACACGCGGCAACGGGCCAA
GTGGTCTATGTCCATGAGGCGAGCAACATGAAGAGGTGGAGCAAACCCAC
CGCTGCTGATGACCTCTCTTCTGACATCCAGCAAACGAGGCAGGCACACG
CAGACGCTGCCAGGCAAGAAAAACAGCAGCAGCAGCAGCAGCAAGAGCAG
CAGCGTGGCAGTGGAGGAGGGAAGAACAAGAAGAGGGGGAGGGAGGGGGT
GGAGGAGGTCGACCCAATGGACCCGACGGGGGGGAAGGGAGGAGGAGGGT
GGTCACAGGGATTGGGGGGAGGGAATGACCGCATGGCGGACAGCACTGCG
GGTGGAAGTCTATGGCAGCAGCGGCCTTTGCCCGCACCGGGGGCTGTTTT
GAGAAAGCAGGGTGGAGGGGGAAGGGGGGGGGGAGGAGGGCATCAGCAAG
GACCGACTTGGAGACGGTGA
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Synonyms
Publications