NO12G01680, NO12G01680 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G01680
Unique Name	NO12G01680
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1656
Alignment location	chr12:502593..504248 -

Link to JBrowse

Properties


Property Name	Value
Description	Cyclin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:502593..504248 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR036915	Cyclin-like_sf
IPR006671	Cyclin_N
IPR004367	Cyclin_C-dom
IPR013763	Cyclin-like

Homology

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: EWM25863.1 (Cyclin [Nannochloropsis gaditana])

HSP 1 Score: 587.8 bits (1514), Expect = 3.000e-164
Identity = 283/327 (86.54%), Postives = 306/327 (93.58%), Query Frame = 0

Query:  145 VEDMDLIQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPALGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDLEGMV 472
            V+DMDLIQEV+EIDMHIEE +EMP+E   +E  EALGAI +DLQGMTLKYS  RP LG  VDDIDA+DA NPLACV+Y E+QY+HYREKECRPGYDP YM KQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVN+IDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTD AYTRKQIIDMEAFMLATLKFQVTVCTTHCF+VRFLKAGHADNK+YFLASYI+ERTLQEVD+LCFLPSMVAAAAVYLARKNCG+R WSPTL HYTKY+E+ALLPCLRVLSPWLNSRSQ+LQAIRKKYGA+KFMMVS ++L G+V
Sbjct:   10 VDDMDLIQEVEEIDMHIEEASEMPQEAIQAESQEALGAIIEDLQGMTLKYSTARPVLGLGVDDIDALDASNPLACVDYVESQYSHYREKECRPGYDPGYMKKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNLIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDAAYTRKQIIDMEAFMLATLKFQVTVCTTHCFLVRFLKAGHADNKLYFLASYIAERTLQEVDVLCFLPSMVAAAAVYLARKNCGMRSWSPTLNHYTKYSEDALLPCLRVLSPWLNSRSQTLQAIRKKYGAAKFMMVSSLELTGVV 336

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: XP_005856122.1 (cyclin B [Nannochloropsis gaditana CCMP526] >EKU20258.1 cyclin B [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 566.2 bits (1458), Expect = 9.300e-158
Identity = 271/313 (86.58%), Postives = 292/313 (93.29%), Query Frame = 0

Query:  159 MHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPALGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDLEGMV 472
            MHIEE +EMP+E   +E  EALGAI +DLQGMTLKYS  RP LG  VDDIDA+DA NPLACV+Y E+QY+HYREKECRPGYDP YM KQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVN+IDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTD AYTRKQIIDMEAFMLATLKFQVTVCTTHCF+VRFLKAGHADNK+YFLASYI+ERTLQEVD+LCFLPSMVAAAAVYLARKNCG+R WSPTL HYTKY+E+ALLPCLRVLSPWLNSRSQ+LQAIRKKYGA+KFMMVS ++L G+V
Sbjct:    1 MHIEEASEMPQEAIQAESQEALGAIIEDLQGMTLKYSTARPVLGLGVDDIDALDASNPLACVDYVESQYSHYREKECRPGYDPGYMKKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNLIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDAAYTRKQIIDMEAFMLATLKFQVTVCTTHCFLVRFLKAGHADNKLYFLASYIAERTLQEVDVLCFLPSMVAAAAVYLARKNCGMRSWSPTLNHYTKYSEDALLPCLRVLSPWLNSRSQTLQAIRKKYGAAKFMMVSSLELTGVV 313

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: XP_009033498.1 (hypothetical protein AURANDRAFT_12473, partial [Aureococcus anophagefferens] >EGB12480.1 hypothetical protein AURANDRAFT_12473, partial [Aureococcus anophagefferens])

HSP 1 Score: 305.1 bits (780), Expect = 3.900e-79
Identity = 149/263 (56.65%), Postives = 194/263 (73.76%), Query Frame = 0

Query:  207 DIDAVDADNPLACVEYAENQ----YTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGM 466
            D+DA DA NP A  EY  +     Y H+REKE     +P YM++Q +IN +MRAIL+DWLVEVH KFK  PETLYLTVN+IDR+L    V R  LQLVGV+A L+A KYEEIYPPE+K+LVY+TD AYT++QI+ ME  M+  LK+++T+ + HCFM+R+LKAGHAD ++ +LASY++ER LQE  +L +LPSMVAA AVY+ARKN G   WSPTL HY +YTE +L  CL  +S  ++S   SLQA++KKY + K+  V+ M
Sbjct:    1 DVDARDASNPQAVTEYVNDMRAPAYAHFREKELETSVNPTYMSRQAHINEKMRAILIDWLVEVHLKFKLVPETLYLTVNLIDRYLLGSPVERSNLQLVGVSALLLASKYEEIYPPELKDLVYITDKAYTQEQILSMEEKMVKALKYKMTIASIHCFMMRYLKAGHADRRMVWLASYVAERMLQEYAMLKYLPSMVAACAVYIARKNLGRNAWSPTLLHYAQYTESSLRACLEEMSSVIHSTKGSLQAVKKKYSSEKYGQVALM 263

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: GAX26866.1 (cyclin B [Fistulifera solaris])

HSP 1 Score: 288.5 bits (737), Expect = 3.700e-74
Identity = 139/263 (52.85%), Postives = 190/263 (72.24%), Query Frame = 0

Query:  205 VDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDL 468
            VD+ID  D+D+PL    Y  + Y H+REKE      P YM  Q +IN RMR+ILVDWLVEVH KFK  PETLYLT+N+IDRFL++++V RP+LQLVGVT+ LIA KYEEI+PPE+++LVY+ D AYT++ I+ ME  +L TL++ VT+ + H F+VRFLKAGHAD KI  L+ YI + TLQ  ++L +LPS +AAAAV++AR+  G  PWSPTL  Y  Y EE ++P  R +    ++ S+ L+A+ KKY +S++  V+  +L
Sbjct:  111 VDNIDDRDSDDPLCTTSYVNDMYVHFREKEVFSSVRPIYMENQTHINERMRSILVDWLVEVHLKFKLVPETLYLTINMIDRFLEKERVSRPRLQLVGVTSLLIASKYEEIFPPELRDLVYICDKAYTKQDILQMEELILKTLEYNVTIPSAHAFLVRFLKAGHADKKIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRVVGRNPWSPTLLKYANYCEEEVIPVARAILREKSTASEELKAVNKKYSSSRYGGVAAYEL 373

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: GAX20429.1 (cyclin B [Fistulifera solaris])

HSP 1 Score: 287.7 bits (735), Expect = 6.400e-74
Identity = 139/263 (52.85%), Postives = 189/263 (71.86%), Query Frame = 0

Query:  205 VDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDL 468
            VD+ID  D+D+PL    Y  + Y H+REKE      P YM  Q +IN RMR+ILVDWLVEVH KFK  PETLYLT+N+IDRFL++++V RP+LQLVGVT+ LIA KYEEI+PPE+++LVY+ D AYT++ I+ ME  +L TL++ VT+ + H F+VRFLKAGHAD KI  L+ YI + TLQ  ++L +LPS +AAAAV++AR+  G  PWSPTL  Y  Y EE ++P  R +    ++ S  L+A+ KKY +S++  V+  +L
Sbjct:  111 VDNIDDRDSDDPLCTTSYVNDMYVHFREKEVFSSVRPIYMENQTHINERMRSILVDWLVEVHLKFKLVPETLYLTINMIDRFLEKERVSRPRLQLVGVTSLLIASKYEEIFPPELRDLVYICDKAYTKQDILQMEELILKTLEYNVTIPSAHAFLVRFLKAGHADKKIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRVVGRNPWSPTLLKYANYCEEEVIPVARAILREKSTASDELKAVNKKYSSSRYGGVAAYEL 373

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: CBJ31941.1 (cyclin B2 [Ectocarpus siliculosus])

HSP 1 Score: 285.8 bits (730), Expect = 2.400e-73
Identity = 141/259 (54.44%), Postives = 185/259 (71.43%), Query Frame = 0

Query:  207 DIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGM 466
            DID  DAD PLA  EY E+ Y   RE+E     D  YM  QP +N RMR+IL+DWLVEVH KFK  P+TLYLTV +ID++L+ + V R  LQLVGVTA L+A KYEEIYPP++++LV++TD AY R QI++ME+ M   L+F++TV T +CF++R+LKA HAD KI  L+ Y++ER LQEV +L +LPS+VA  A+Y+ARKN G   WSPTL  YTKY  E L+PCL  +S  L      L+A++KK+ +SKF  V+ M
Sbjct:  145 DIDQRDADEPLAVTEYVEDLYVFLREREIATKVDRGYMDSQPNVNERMRSILIDWLVEVHLKFKLVPDTLYLTVYLIDKYLELETVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCYVAERMLQEVSMLDYLPSVVACCAIYVARKNMGRTCWSPTLEKYTKYRVEDLMPCLGEISRVLKQEGGDLEAVKKKFSSSKFGSVATM 403

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: OEU16486.1 (Cyclin_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 283.9 bits (725), Expect = 9.200e-73
Identity = 139/267 (52.06%), Postives = 192/267 (71.91%), Query Frame = 0

Query:  201 LGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDL 468
            +GP  D+ID  DA++PL   EY ++ Y H+R KE      P YM  Q +IN RMR+ILVDWLVEVH KFK  PETLYLT+N+IDR+L+R++V RP+LQLVGVT+ LIA KYEEIYPPE+++LVY+ D AYTR +II+ME  +L TL++ +T+ + H F+VRFLKA HAD +I  L+ YI + TLQ  ++L +LPS +AAAAV++AR+  G   WSPTL  Y KY EE ++P  + +     + +Q L+A+ KKY +S++  V+ + L
Sbjct:    1 MGPS-DNIDERDAEDPLCATEYVQDMYEHFRLKEGSTSVRPLYMDNQTHINERMRSILVDWLVEVHLKFKLVPETLYLTINLIDRYLERQEVSRPRLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRTEIIEMEEKILKTLEYNITIPSAHAFLVRFLKAAHADKRIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRTVGRNSWSPTLLKYAKYREEDIMPIAKAVMNEKANAAQELRAVNKKYTSSRYGGVASLTL 266

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: XP_002289263.1 (hypothetical protein THAPSDRAFT_33883 [Thalassiosira pseudonana CCMP1335] >EED92800.1 hypothetical protein THAPSDRAFT_33883 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 280.4 bits (716), Expect = 1.000e-71
Identity = 135/262 (51.53%), Postives = 187/262 (71.37%), Query Frame = 0

Query:  206 DDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDL 468
            DDID  D+D+PL    Y ++ Y H+R KE      P YM  Q +IN RMR+ILVDWLVEVH KFK  PETLYLTVN+IDR+L + +V RPKLQLVGVTA LIA KYEEIYPPE+++LVY+ D AY++ +I++ME  +L +L++Q+T+ + H F+VR+LKA HAD KI  L+ +I + TLQ  ++L +LPS +AAAAV++AR+  G   WSPTL  Y +Y EE ++P  R +    +S S  L+A+ KKY +S++  V+ + +
Sbjct:   16 DDIDERDSDDPLCATSYVQDMYEHFRGKEVFTSVRPVYMEDQQFINERMRSILVDWLVEVHLKFKLVPETLYLTVNVIDRYLAKTEVSRPKLQLVGVTALLIASKYEEIYPPELRDLVYICDRAYSKNEILEMEEIILKSLEYQITIPSAHAFLVRYLKAAHADKKIVQLSCFILDGTLQSYNMLHYLPSQLAAAAVFIARRTVGRNAWSPTLLKYAQYREEDIMPVARAVLAEKSSSSTELRAVNKKYTSSRYGGVANISI 277

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: EJK72835.1 (hypothetical protein THAOC_05599 [Thalassiosira oceanica])

HSP 1 Score: 277.3 bits (708), Expect = 8.600e-71
Identity = 136/256 (53.12%), Postives = 180/256 (70.31%), Query Frame = 0

Query:  202 GPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGAS 458
            GP  DDID  D+D+PL    Y +  Y H+R KE      P YM  Q +IN RMR+ILVDWLVEVH KFK  PETLYLT+N+IDR+L + +V RPKLQLVGVTA LIA KYEEIYPPE+++LVY+ D AY++ +I+DME  +L  L++Q+T+ + H F+VR+LKA HAD KI  L+ +I + TLQ  ++L +LPS +AAAAV++AR+  G   WSPTL  Y +Y EE ++P  R +     S S  L+A+ KKY +S
Sbjct:  128 GP-ADDIDERDSDDPLCATSYVQEMYEHFRIKEVSTSVRPVYMEDQSFINERMRSILVDWLVEVHLKFKLVPETLYLTINVIDRYLSKTEVSRPKLQLVGVTALLIASKYEEIYPPELRDLVYICDRAYSKMEILDMEEIILKKLEYQITIPSAHAFLVRYLKAAHADKKIVQLSCFILDGTLQSYNMLHYLPSQLAAAAVFVARRTVGRNAWSPTLLKYAQYREEDVIPVARAVLAEKGSSSIELRAVNKKYTSS 382

[Close]

BLAST of NO12G01680 vs. NCBI_GenBank
Match: XP_002180397.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47805.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 275.8 bits (704), Expect = 2.500e-70
Identity = 140/258 (54.26%), Postives = 180/258 (69.77%), Query Frame = 0

Query:  204 DVDDIDAVD--ADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKF 460
            +VDDIDA D  A + L    Y +  YT++REKE      P YM  QP+IN RMR+ILVDWLVEVH KFK  PETLYLTVNIIDRFL   +V RPKLQLVGVT+ LIA KYEEIYPPE+++LVY+ D AYTR  II+ME  +L TL +Q+T+ + H F+VR+LKAGHAD +I  L+ YI + TLQ  D+L +LPS +AAAAV++AR+  G   WSPTL  Y +Y EE ++   R +    +  +  L+A+ KKY   ++
Sbjct:   34 NVDDIDARDETAGDVLCVTSYVQGMYTYFREKEVTTAVLPVYMESQPHINERMRSILVDWLVEVHLKFKLVPETLYLTVNIIDRFLQIHKVSRPKLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRPDIIEMEECILKTLGYQITIPSAHAFLVRYLKAGHADKRIVQLSCYILDSTLQSYDLLRYLPSQLAAAAVFIARRTVGRNAWSPTLLRYAEYCEEEIITVARDVLREKSIANPELRAVNKKYSGHRY 291

The following BLAST results are available for this feature:

BLAST of NO12G01680 vs. NCBI_GenBank

BLAST of NO12G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25863.1	3.000e-164	86.54	Cyclin [Nannochloropsis gaditana]	[more]
XP_005856122.1	9.300e-158	86.58	cyclin B [Nannochloropsis gaditana CCMP526] >EKU20...	[more]
XP_009033498.1	3.900e-79	56.65	hypothetical protein AURANDRAFT_12473, partial [Au...	[more]
GAX26866.1	3.700e-74	52.85	cyclin B [Fistulifera solaris]	[more]
GAX20429.1	6.400e-74	52.85	cyclin B [Fistulifera solaris]	[more]
CBJ31941.1	2.400e-73	54.44	cyclin B2 [Ectocarpus siliculosus]	[more]
OEU16486.1	9.200e-73	52.06	Cyclin_N-domain-containing protein [Fragilariopsis...	[more]
XP_002289263.1	1.000e-71	51.53	hypothetical protein THAPSDRAFT_33883 [Thalassiosi...	[more]
EJK72835.1	8.600e-71	53.13	hypothetical protein THAOC_05599 [Thalassiosira oc...	[more]
XP_002180397.1	2.500e-70	54.26	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010088	NSK010088	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G01680.1	NO12G01680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592149	gene_5325	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100054g27	gene4652	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G01680.1	NO12G01680.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G01680 ID=NO12G01680|Name=NO12G01680|organism=Nannochloropsis oceanica|type=gene|length=1656bp
ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC
GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG
AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG
GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG
CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT
CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG
AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC
GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT
TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG
ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT
Ggtacgtaataatgaagagattggagaagaaggagagggagaatgaagac
ttttgtagatcaacttttcttttctacttctaattgataatttatacagC
CGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACA
CAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGgtacgtat
ttaaacttgtctttctctttgagactactttctccactctttcattactt
ggatgtaatctcaacgcgttgtctttttaacaactacttgttgctgtact
tccccctcctcccttcctcccctcttatctacagCCCGCCCTCGGGCCGG
ACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCTTGCATGCGTG
GAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCC
TGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATCAACGTCCGCA
TGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTACAAATTCAAG
TGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTGATCGTTTCCT
AGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTGGGGGTGACCG
CGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCCGGAGGTAAAG
GAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGCAAATAATTGA
CATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTGACCGTTTGTA
CGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCATGCGGATAAC
AAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACATTGCAGGAGGT
GGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCCGCTGTGTATC
TGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGACGTTGACGCAT
TACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGAGGGTGTTGAG
CCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATTCGGAAGAAGT
ATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTTGGAGGGAATG
GTGTAG

protein sequence of NO12G01680.1

>NO12G01680.1-protein ID=NO12G01680.1-protein|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MYAARSDSATFGGKHVSAQQQEVPSMGDGPQQPEGADPVQKPGVSTRSGL
ASGASRRALGDITNNRSANTGAGGKQGQQQQNVSKPTTRAALAAAVAAGS
SSITGSSSSSLGGLASAAPVPVLHQQSAAALPHLEEESRRRQQEVEDMDL
IQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPA
LGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYI
NVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLV
GVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQV
TVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAA
AVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAI
RKKYGASKFMMVSGMDLEGMV*

Synonyms

Publications