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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:502593..504248 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01680.1 vs.
Match: EWM25863.1 (Cyclin [Nannochloropsis gaditana]) HSP 1 Score: 591.7 bits (1524), Expect = 2.100e-165 Identity = 285/335 (85.07%), Postives = 312/335 (93.13%), Query Frame = 0
Query: 137 ESRRRQQEVEDMDLIQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPALGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDLEGMV 472
+ +RR++ V+DMDLIQEV+EIDMHIEE +EMP+E +E EALGAI +DLQGMTLKYS RP LG VDDIDA+DA NPLACV+Y E+QY+HYREKECRPGYDP YM KQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVN+IDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTD AYTRKQIIDMEAFMLATLKFQVTVCTTHCF+VRFLKAGHADNK+YFLASYI+ERTLQEVD+LCFLPSMVAAAAVYLARKNCG+R WSPTL HYTKY+E+ALLPCLRVLSPWLNSRSQ+LQAIRKKYGA+KFMMVS ++L G+V
Sbjct: 2 DGKRREEAVDDMDLIQEVEEIDMHIEEASEMPQEAIQAESQEALGAIIEDLQGMTLKYSTARPVLGLGVDDIDALDASNPLACVDYVESQYSHYREKECRPGYDPGYMKKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNLIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDAAYTRKQIIDMEAFMLATLKFQVTVCTTHCFLVRFLKAGHADNKLYFLASYIAERTLQEVDVLCFLPSMVAAAAVYLARKNCGMRSWSPTLNHYTKYSEDALLPCLRVLSPWLNSRSQTLQAIRKKYGAAKFMMVSSLELTGVV 336
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT GCCGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCA CACAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGCCCGCC CTCGGGCCGGACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCT TGCATGCGTGGAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGG AATGTCGGCCTGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATC AACGTCCGCATGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTA CAAATTCAAGTGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTG ATCGTTTCCTAGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTG GGGGTGACCGCGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCC GGAGGTAAAGGAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGC AAATAATTGACATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTG ACCGTTTGTACGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCA TGCGGATAACAAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACAT TGCAGGAGGTGGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCC GCTGTGTATCTGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGAC GTTGACGCATTACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGA GGGTGTTGAGCCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATT CGGAAGAAGTATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTT GGAGGGAATGGTGTAG back to topprotein sequence of NO12G01680.1 >NO12G01680.1-protein ID=NO12G01680.1-protein|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp MYAARSDSATFGGKHVSAQQQEVPSMGDGPQQPEGADPVQKPGVSTRSGL ASGASRRALGDITNNRSANTGAGGKQGQQQQNVSKPTTRAALAAAVAAGS SSITGSSSSSLGGLASAAPVPVLHQQSAAALPHLEEESRRRQQEVEDMDL IQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPA LGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYI NVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLV GVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQV TVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAA AVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAI RKKYGASKFMMVSGMDLEGMV* back to topmRNA from alignment at chr12:502593..504248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at chr12:502593..504248- (Nannochloropsis oceanica) ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC
GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG
AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG
GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG
CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT
CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG
AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC
GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT
TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG
ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT
GGTACGTAATAATGAAGAGATTGGAGAAGAAGGAGAGGGAGAATGAAGAC
TTTTGTAGATCAACTTTTCTTTTCTACTTCTAATTGATAATTTATACAGC
CGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACA
CAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACGTAT
TTAAACTTGTCTTTCTCTTTGAGACTACTTTCTCCACTCTTTCATTACTT
GGATGTAATCTCAACGCGTTGTCTTTTTAACAACTACTTGTTGCTGTACT
TCCCCCTCCTCCCTTCCTCCCCTCTTATCTACAGCCCGCCCTCGGGCCGG
ACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCTTGCATGCGTG
GAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCC
TGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATCAACGTCCGCA
TGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTACAAATTCAAG
TGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTGATCGTTTCCT
AGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTGGGGGTGACCG
CGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCCGGAGGTAAAG
GAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGCAAATAATTGA
CATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTGACCGTTTGTA
CGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCATGCGGATAAC
AAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACATTGCAGGAGGT
GGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCCGCTGTGTATC
TGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGACGTTGACGCAT
TACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGAGGGTGTTGAG
CCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATTCGGAAGAAGT
ATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTTGGAGGGAATG
GTGTAG back to topCoding sequence (CDS) from alignment at chr12:502593..504248- >NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr12:502593..504248- (Nannochloropsis oceanica) ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT GCCGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCA CACAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGCCCGCC CTCGGGCCGGACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCT TGCATGCGTGGAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGG AATGTCGGCCTGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATC AACGTCCGCATGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTA CAAATTCAAGTGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTG ATCGTTTCCTAGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTG GGGGTGACCGCGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCC GGAGGTAAAGGAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGC AAATAATTGACATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTG ACCGTTTGTACGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCA TGCGGATAACAAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACAT TGCAGGAGGTGGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCC GCTGTGTATCTGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGAC GTTGACGCATTACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGA GGGTGTTGAGCCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATT CGGAAGAAGTATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTT GGAGGGAATGGTGTAG back to top
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