NO12G01680.1, NO12G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01680.1
Unique NameNO12G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr12:502593..504248 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:502593..504248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01680.1 vs.
Match: EWM25863.1 (Cyclin [Nannochloropsis gaditana])

HSP 1 Score: 591.7 bits (1524), Expect = 2.100e-165
Identity = 285/335 (85.07%), Postives = 312/335 (93.13%), Query Frame = 0
Query:  137 ESRRRQQEVEDMDLIQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPALGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQVTVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAAAVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAIRKKYGASKFMMVSGMDLEGMV 472
            + +RR++ V+DMDLIQEV+EIDMHIEE +EMP+E   +E  EALGAI +DLQGMTLKYS  RP LG  VDDIDA+DA NPLACV+Y E+QY+HYREKECRPGYDP YM KQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVN+IDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTD AYTRKQIIDMEAFMLATLKFQVTVCTTHCF+VRFLKAGHADNK+YFLASYI+ERTLQEVD+LCFLPSMVAAAAVYLARKNCG+R WSPTL HYTKY+E+ALLPCLRVLSPWLNSRSQ+LQAIRKKYGA+KFMMVS ++L G+V
Sbjct:    2 DGKRREEAVDDMDLIQEVEEIDMHIEEASEMPQEAIQAESQEALGAIIEDLQGMTLKYSTARPVLGLGVDDIDALDASNPLACVDYVESQYSHYREKECRPGYDPGYMKKQPYINVRMRAILVDWLVEVHYKFKCCPETLYLTVNLIDRFLDRKQVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDAAYTRKQIIDMEAFMLATLKFQVTVCTTHCFLVRFLKAGHADNKLYFLASYIAERTLQEVDVLCFLPSMVAAAAVYLARKNCGMRSWSPTLNHYTKYSEDALLPCLRVLSPWLNSRSQTLQAIRKKYGAAKFMMVSSLELTGVV 336          
The following BLAST results are available for this feature:
BLAST of NO12G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25863.12.100e-16585.07Cyclin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01680NO12G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01680.1NO12G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01680.1.cds1NO12G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01680.1.cds2NO12G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01680.1.cds3NO12G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC
GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG
AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG
GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG
CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT
CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG
AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC
GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT
TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG
ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT
GCCGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCA
CACAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGCCCGCC
CTCGGGCCGGACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCT
TGCATGCGTGGAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGG
AATGTCGGCCTGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATC
AACGTCCGCATGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTA
CAAATTCAAGTGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTG
ATCGTTTCCTAGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTG
GGGGTGACCGCGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCC
GGAGGTAAAGGAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGC
AAATAATTGACATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTG
ACCGTTTGTACGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCA
TGCGGATAACAAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACAT
TGCAGGAGGTGGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCC
GCTGTGTATCTGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGAC
GTTGACGCATTACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGA
GGGTGTTGAGCCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATT
CGGAAGAAGTATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTT
GGAGGGAATGGTGTAG
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protein sequence of NO12G01680.1

>NO12G01680.1-protein ID=NO12G01680.1-protein|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MYAARSDSATFGGKHVSAQQQEVPSMGDGPQQPEGADPVQKPGVSTRSGL
ASGASRRALGDITNNRSANTGAGGKQGQQQQNVSKPTTRAALAAAVAAGS
SSITGSSSSSLGGLASAAPVPVLHQQSAAALPHLEEESRRRQQEVEDMDL
IQEVDEIDMHIEEDNEMPREGEGSEPLEALGAITQDLQGMTLKYSAVRPA
LGPDVDDIDAVDADNPLACVEYAENQYTHYREKECRPGYDPAYMAKQPYI
NVRMRAILVDWLVEVHYKFKCCPETLYLTVNIIDRFLDRKQVPRPKLQLV
GVTAFLIACKYEEIYPPEVKELVYMTDGAYTRKQIIDMEAFMLATLKFQV
TVCTTHCFMVRFLKAGHADNKIYFLASYISERTLQEVDILCFLPSMVAAA
AVYLARKNCGLRPWSPTLTHYTKYTEEALLPCLRVLSPWLNSRSQSLQAI
RKKYGASKFMMVSGMDLEGMV*
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mRNA from alignment at chr12:502593..504248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at chr12:502593..504248- (Nannochloropsis oceanica)
ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT GGTACGTAATAATGAAGAGATTGGAGAAGAAGGAGAGGGAGAATGAAGAC TTTTGTAGATCAACTTTTCTTTTCTACTTCTAATTGATAATTTATACAGC CGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCACA CAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGGTACGTAT TTAAACTTGTCTTTCTCTTTGAGACTACTTTCTCCACTCTTTCATTACTT GGATGTAATCTCAACGCGTTGTCTTTTTAACAACTACTTGTTGCTGTACT TCCCCCTCCTCCCTTCCTCCCCTCTTATCTACAGCCCGCCCTCGGGCCGG ACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCTTGCATGCGTG GAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGGAATGTCGGCC TGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATCAACGTCCGCA TGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTACAAATTCAAG TGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTGATCGTTTCCT AGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTGGGGGTGACCG CGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCCGGAGGTAAAG GAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGCAAATAATTGA CATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTGACCGTTTGTA CGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCATGCGGATAAC AAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACATTGCAGGAGGT GGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCCGCTGTGTATC TGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGACGTTGACGCAT TACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGAGGGTGTTGAG CCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATTCGGAAGAAGT ATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTTGGAGGGAATG GTGTAG
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Coding sequence (CDS) from alignment at chr12:502593..504248-

>NO12G01680.1 ID=NO12G01680.1|Name=NO12G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr12:502593..504248- (Nannochloropsis oceanica)
ATGTACGCGGCACGCAGCGACTCCGCCACATTTGGTGGTAAGCACGTGTC
GGCACAGCAGCAGGAGGTACCGTCCATGGGAGACGGGCCTCAACAACCAG
AAGGCGCTGATCCGGTCCAAAAGCCTGGAGTTTCTACCCGCAGCGGCCTG
GCCTCCGGGGCTTCCCGCCGTGCTCTGGGAGACATTACCAACAACAGGAG
CGCAAATACCGGAGCAGGGGGTAAGCAAGGGCAGCAACAGCAGAATGTGT
CCAAGCCCACCACACGGGCCGCTTTGGCCGCTGCCGTCGCGGCTGGCTCG
AGCTCCATCACCGGCAGCAGCAGCTCCAGTCTGGGTGGCTTGGCTTCGGC
GGCACCGGTGCCCGTCTTGCACCAGCAATCCGCCGCGGCGTTGCCACACT
TGGAGGAGGAGAGCAGGCGGCGACAGCAGGAGGTGGAAGACATGGACTTG
ATTCAAGAGGTGGACGAGATTGACATGCACATTGAGGAGGACAATGAGAT
GCCGCGAGAAGGAGAGGGAAGCGAGCCGCTTGAGGCGTTGGGCGCCATCA
CACAGGACTTGCAGGGCATGACCTTAAAGTATTCTGCAGTCCGGCCCGCC
CTCGGGCCGGACGTGGACGACATTGACGCCGTGGACGCCGATAACCCCCT
TGCATGCGTGGAGTACGCGGAGAACCAATACACCCACTACCGGGAAAAGG
AATGTCGGCCTGGGTACGACCCGGCCTACATGGCCAAGCAGCCGTACATC
AACGTCCGCATGCGCGCCATCCTCGTCGACTGGCTCGTGGAGGTTCATTA
CAAATTCAAGTGCTGTCCCGAAACCCTCTATTTGACAGTTAATATAATTG
ATCGTTTCCTAGACCGAAAGCAGGTCCCTCGGCCCAAGCTGCAACTGGTG
GGGGTGACCGCGTTTTTGATTGCGTGTAAATATGAGGAGATCTACCCGCC
GGAGGTAAAGGAGTTGGTATACATGACGGATGGCGCGTACACTAGGAAGC
AAATAATTGACATGGAGGCTTTCATGTTGGCGACGCTCAAGTTCCAAGTG
ACCGTTTGTACGACGCATTGTTTCATGGTCCGGTTTCTAAAGGCAGGGCA
TGCGGATAACAAGATTTATTTCTTGGCGAGTTACATCTCGGAAAGGACAT
TGCAGGAGGTGGATATCTTGTGTTTTTTGCCGTCCATGGTCGCGGCTGCC
GCTGTGTATCTGGCGCGAAAAAATTGTGGGCTACGCCCGTGGAGTCCGAC
GTTGACGCATTACACCAAATACACAGAGGAGGCGTTGTTGCCGTGTTTGA
GGGTGTTGAGCCCGTGGTTGAATTCGAGAAGTCAGTCCTTGCAGGCCATT
CGGAAGAAGTATGGGGCGTCCAAATTCATGATGGTCTCCGGAATGGACTT
GGAGGGAATGGTGTAG
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Synonyms
Publications