NO12G00040, NO12G00040 (gene) Nannochloropsis oceanica

Overview
NameNO12G00040
Unique NameNO12G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1286
Alignment locationchr12:8004..9289 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:8004..9289 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO12G00040 vs. NCBI_GenBank
Match: XP_005854314.1 (hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526] >EKU22053.1 hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526] >EWM26009.1 hypothetical protein Naga_100150g3 [Nannochloropsis gaditana])

HSP 1 Score: 112.1 bits (279), Expect = 1.800e-21
Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 0 
Query:   58 KVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRWYTDQVDALLGVESEIARRLKTPTLSLAPSQEGEXXXXXXXXXXXXXXXXXXXXXXXXGDGEG-EAGRQEGVKGWKKFIKWW 172
            KV TGV    TGFQL+F TDYG++EHVFTPIQRWY  Q+D+LLGVESE+ARRL+TPT SL  S+E E                          GEG   GR+ G  GW+++I WW
Sbjct:   17 KVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLSHSPSMPAKAGEGVREGRESG--GWRRWISWW 129
The following BLAST results are available for this feature:
BLAST of NO12G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854314.11.800e-2150.43hypothetical protein NGA_0190800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009890NSK009890Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00040.1NO12G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00040.2NO12G00040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609540gene_10060Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100150g3gene4504Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00040.1NO12G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00040.2NO12G00040.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00040 ID=NO12G00040|Name=NO12G00040|organism=Nannochloropsis oceanica|type=gene|length=1286bp
GTAGTTGGGAACATACGTGTTACGTTGCCCTCCATGTGACGGGAAGTGCA
TGTGGGGCGGTGGAAGGGGCAAGGCAATTAATTTACCAGCAAACATGCAA
GCAAACCCACAGCGTCCACAACTCCCTCAATCAACGCCCACCCACACTCA
TTGCACTGCTCAGCTCTTGATCAGGACTGCTCTTGCAATCGGCGTATTCG
CACTCACTCTCTGATCAGGGCCTCCTATTATCCTTATCTCTACTGCCTCT
CCAAGTCACTGCTCATCCCTCTACAGGTCCCACACACAGCCACGATCACC
AACGCGCTATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGG
GCCTGgtttgtaccctctttcatgtctttatcctgtcttgtcctgtcttg
tcttgcaccttctgagtgtaccctcagagaggtcattatcatggcgcctg
ccgaagcaggctgacactgtaccttgcagaacatgcggtggcaatgtcaa
ggtcccatatttcatcccgaggcttgtgcggttctgacacgtgaggaccc
gtccttgatcaagatacagtttgcccttcccccatcccctttgacctcct
ccctcccttcctccccaaatttctctctccacgttaatcatattgcacat
agGAAGGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCT
GTTCCGGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGgtccgtt
ggagggattatcgagtagggaggaatgatgcgatgggagccacgggagcc
agtcacaaccatgctcccgccgacctccatcagtcacaaccccttctcgc
ctgccgtaaccgcgcaccatcatagtctgtctcctcgctagaccaccatc
atttcatcccctcgccttatcctgacctagagcaccgccatcctctccct
gcttccctccctccctatcttcagATCCAGCGCTGGTACACGGACCAGGT
GGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCGTCGGCTCAAGACCC
CCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGGAACGAGCGCGGGTC
GCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACAGACCCCCCCCTTCC
GCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACAGGAAGGGGTGAAAG
GATGGAAGAAATTCATCAAGTGGTGGTAGATTGGAAGAAATTCATAAGGA
AAGCCAAAAGAATGAATGTATGTCACTAACGGAAAG
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protein sequence of NO12G00040.1

>NO12G00040.1-protein ID=NO12G00040.1-protein|Name=NO12G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MSGGGPVLKPSTLRAWKVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRW
YTDQVDALLGVESEIARRLKTPTLSLAPSQEGEERARVASVAAAAAAAVT
DPPLPPVGDGEGEAGRQEGVKGWKKFIKWW*
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protein sequence of NO12G00040.2

>NO12G00040.2-protein ID=NO12G00040.2-protein|Name=NO12G00040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MRWQCQGPIFHPEACAVLTREDPSLIKIQFALPPSPLTSSLPSSPNFSLH
VNHIAHRKVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRWYTDQVDALL
GVESEIARRLKTPTLSLAPSQEGEERARVASVAAAAAAAVTDPPLPPVGD
GEGEAGRQEGVKGWKKFIKWW*
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Synonyms
Publications