NO12G00040.1, NO12G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00040.1
Unique NameNO12G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length758
Alignment locationchr12:8004..9289 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:8004..9289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00040.1 vs.
Match: XP_005854314.1 (hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526]; EKU22053.1 hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526]; EWM26009.1 hypothetical protein Naga_100150g3 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 7.300e-36
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0 
Query:    1 MSGGGPVLKPSTLRAWKVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRWYTDQVDALLGVESEIARRLKTPTLSLAPSQEGEERARVASVAAAAAAAVTDPPLPPVGDGEG-EAGRQEGVKGWKKFIKWW 131
            MSGGGPVLKPSTLRAWKV TGV    TGFQL+F TDYG++EHVFTPIQRWY  Q+D+LLGVESE+ARRL+TPT SL  S+E EE AR A+ A      ++  P  P   GEG   GR+ G  GW+++I WW
Sbjct:    1 MSGGGPVLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLSHSPSMPAKAGEGVREGRESG--GWRRWISWW 129
The following BLAST results are available for this feature:
BLAST of NO12G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854314.17.300e-3661.83hypothetical protein NGA_0190800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00040NO12G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00040.1NO12G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00040.1.cds1NO12G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00040.1.cds2NO12G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00040.1.cds3NO12G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00040.1 ID=NO12G00040.1|Name=NO12G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
GTAGTTGGGAACATACGTGTTACGTTGCCCTCCATGTGACGGGAAGTGCA
TGTGGGGCGGTGGAAGGGGCAAGGCAATTAATTTACCAGCAAACATGCAA
GCAAACCCACAGCGTCCACAACTCCCTCAATCAACGCCCACCCACACTCA
TTGCACTGCTCAGCTCTTGATCAGGACTGCTCTTGCAATCGGCGTATTCG
CACTCACTCTCTGATCAGGGCCTCCTATTATCCTTATCTCTACTGCCTCT
CCAAGTCACTGCTCATCCCTCTACAGGTCCCACACACAGCCACGATCACC
AACGCGCTATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGG
GCCTGGAAGGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCT
CCTGTTCCGGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGATCC
AGCGCTGGTACACGGACCAGGTGGACGCTCTGCTCGGAGTCGAAAGCGAG
ATTGCCCGTCGGCTCAAGACCCCCACCCTCAGCCTCGCACCTTCTCAAGA
AGGGGAGGAACGAGCGCGGGTCGCATCAGTGGCAGCAGCTGCAGCAGCAG
CAGTTACAGACCCCCCCCTTCCGCCTGTGGGGGATGGGGAAGGAGAGGCA
GGAAGACAGGAAGGGGTGAAAGGATGGAAGAAATTCATCAAGTGGTGGTA
GATTGGAAGAAATTCATAAGGAAAGCCAAAAGAATGAATGTATGTCACTA
ACGGAAAG
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protein sequence of NO12G00040.1

>NO12G00040.1-protein ID=NO12G00040.1-protein|Name=NO12G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MSGGGPVLKPSTLRAWKVTTGVATFFTGFQLLFRTDYGEREHVFTPIQRW
YTDQVDALLGVESEIARRLKTPTLSLAPSQEGEERARVASVAAAAAAAVT
DPPLPPVGDGEGEAGRQEGVKGWKKFIKWW*
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mRNA from alignment at chr12:8004..9289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00040.1 ID=NO12G00040.1|Name=NO12G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at chr12:8004..9289+ (Nannochloropsis oceanica)
GTAGTTGGGAACATACGTGTTACGTTGCCCTCCATGTGACGGGAAGTGCA
TGTGGGGCGGTGGAAGGGGCAAGGCAATTAATTTACCAGCAAACATGCAA
GCAAACCCACAGCGTCCACAACTCCCTCAATCAACGCCCACCCACACTCA
TTGCACTGCTCAGCTCTTGATCAGGACTGCTCTTGCAATCGGCGTATTCG
CACTCACTCTCTGATCAGGGCCTCCTATTATCCTTATCTCTACTGCCTCT
CCAAGTCACTGCTCATCCCTCTACAGGTCCCACACACAGCCACGATCACC
AACGCGCTATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGG
GCCTGGTTTGTACCCTCTTTCATGTCTTTATCCTGTCTTGTCCTGTCTTG
TCTTGCACCTTCTGAGTGTACCCTCAGAGAGGTCATTATCATGGCGCCTG
CCGAAGCAGGCTGACACTGTACCTTGCAGAACATGCGGTGGCAATGTCAA
GGTCCCATATTTCATCCCGAGGCTTGTGCGGTTCTGACACGTGAGGACCC
GTCCTTGATCAAGATACAGTTTGCCCTTCCCCCATCCCCTTTGACCTCCT
CCCTCCCTTCCTCCCCAAATTTCTCTCTCCACGTTAATCATATTGCACAT
AGGAAGGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCT
GTTCCGGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGGTCCGTT
GGAGGGATTATCGAGTAGGGAGGAATGATGCGATGGGAGCCACGGGAGCC
AGTCACAACCATGCTCCCGCCGACCTCCATCAGTCACAACCCCTTCTCGC
CTGCCGTAACCGCGCACCATCATAGTCTGTCTCCTCGCTAGACCACCATC
ATTTCATCCCCTCGCCTTATCCTGACCTAGAGCACCGCCATCCTCTCCCT
GCTTCCCTCCCTCCCTATCTTCAGATCCAGCGCTGGTACACGGACCAGGT
GGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCGTCGGCTCAAGACCC
CCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGGAACGAGCGCGGGTC
GCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACAGACCCCCCCCTTCC
GCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACAGGAAGGGGTGAAAG
GATGGAAGAAATTCATCAAGTGGTGGTAGATTGGAAGAAATTCATAAGGA
AAGCCAAAAGAATGAATGTATGTCACTAACGGAAAG
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Coding sequence (CDS) from alignment at chr12:8004..9289+

>NO12G00040.1 ID=NO12G00040.1|Name=NO12G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr12:8004..9289+ (Nannochloropsis oceanica)
ATGTCAGGAGGCGGCCCCGTCCTGAAACCCTCCACGCTGCGGGCCTGGAA
GGTGACCACGGGTGTGGCAACATTTTTCACGGGCTTTCAGCTCCTGTTCC
GGACAGACTACGGGGAGCGGGAGCACGTCTTCACACCGATCCAGCGCTGG
TACACGGACCAGGTGGACGCTCTGCTCGGAGTCGAAAGCGAGATTGCCCG
TCGGCTCAAGACCCCCACCCTCAGCCTCGCACCTTCTCAAGAAGGGGAGG
AACGAGCGCGGGTCGCATCAGTGGCAGCAGCTGCAGCAGCAGCAGTTACA
GACCCCCCCCTTCCGCCTGTGGGGGATGGGGAAGGAGAGGCAGGAAGACA
GGAAGGGGTGAAAGGATGGAAGAAATTCATCAAGTGGTGGTAG
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Synonyms
Publications