NO11G03390, NO11G03390 (gene) Nannochloropsis oceanica

Overview
NameNO11G03390
Unique NameNO11G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr11:1087096..1088587 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1087096..1088587 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0006384transcription initiation from RNA polymerase III promoter
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex
GO:0055029nuclear DNA-directed RNA polymerase complex
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like
IPR038846RPC9
IPR005574RNA_pol_II_Rpb4
Homology
The following BLAST results are available for this feature:
BLAST of NO11G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR019ncniR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617592gene_12278Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03390.3NO11G03390.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03390.2NO11G03390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03390.1NO11G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03390.3NO11G03390.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03390.2NO11G03390.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03390.1NO11G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03390 ID=NO11G03390|Name=NO11G03390|organism=Nannochloropsis oceanica|type=gene|length=1365bp
CGTATGTGCACGTGGCGCTCTTCCCTCTCGTGAGGTCGAAACTCTCCTTT
TGGAGACGCCTCCCTTCCCTCCATCTCTCCCTCCCTCCCCGTTCCTATCA
CCTAGTCCATGTCCCTCCCCAATTCCCTCTCCCCCCTTGCCGTCGCTTAC
TGTCATTACCTTCTTTCCCTTGTTCTATCCCCTCGCCCTCCTGCGATGGC
CCCATCCTTCCCTCCCTAGCCTTTCCACTAACGACGGCCTTCTCACGGAT
CTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGCGGA
GAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGTCAC
AGAAGGCGTTGACCAAAAACAGGGACTGGATCGAGAAGGAGgtgggaagg
agggaggaagggaaggatggatggagggacaggagcactggaggggaggg
agagcaagtgaggggtgaggtgatggctgacgatgtcctttttcccttac
cctgaatctccttgtatccccccttcctctctttctcccaccctttcttt
ctcacgcaacagATCATAAGACAGCTGTCGGAATTGCCCGCTGGAGGAGA
GACCGAAGAAGGAGTCAAGgtacgcaggcaggcgcttgccctcccacctt
ctctccttccctccttcccttccccccgcccgctttccacatgcaccacc
ctgagcttgtctaatgtctggatctctcataaaaatgctcccatttcaca
caacgaccctccctccctccctccctccctccctccctcctcagTCTTTC
CTCACGGCCCTCCAAGAATTCACGGTATCCTGCCCTCCGTCCATCCCTCC
CCCCTCCTCCGTCCCTCCCTTCACCTCCATCCCCACCACTATCACCACCA
CCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACTCATA
AATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGgtaggtacgtaggg
agggagggaaggaggtagggaggtaggatgggagggagagggggtaggga
cttatgctgaaaagttgtgactgtcgtctggtttaattttcatctgttga
tgaccttatccacccttcctccttccttctttcccacctctccctccctc
cctccctcgctccctccctccctctccttccgtctccagATCATCGAGGA
GTGCGTCGAGCGCCTGAGCGACGAGGAGGTAGAACGGTTGTGCGAGCTGG
TGGCCATCCATCTTGGCGGGGGGCAGGGGGAGGAAGCAGGCGAGGGAGAG
GAGGAAGGAGGGGGGGTGAGTTGAGAGGCATGTAAAGAAAAAGAGGGGAA
CAAAGAGTAATGGGG
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protein sequence of NO11G03390.3

>NO11G03390.3-protein ID=NO11G03390.3-protein|Name=NO11G03390.3|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MEILSTNDGLLTDLDAYQLIKERMSKRAAEKKEKGKKAEKGAGGRSQKAL
TKNRDWIEKEIIRQLSELPAGGETEEGVKSFLTALQEFTVSCPPSIPPPS
SVPPFTSIPTTITTTTSPSPIFTLAETLQLINLRPVAPVEVHLVGT*
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protein sequence of NO11G03390.2

>NO11G03390.2-protein ID=NO11G03390.2-protein|Name=NO11G03390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MEILSTNDGLLTDLDAYQLIKERMSKRAAEKKEKGKKAEKGAGGRSQKAL
TKNRDWIEKEIIRQLSELPAGGETEEGVKSFLTALQEFTVSCPPSIPPPS
SVPPFTSIPTTITTTTSPSPIFTLAETLQLINLRPVAPVEVHLIIEECVE
RLSDEEVERLCELVAIHLGGGQGEEAGEGEEEGGGVS*
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protein sequence of NO11G03390.1

>NO11G03390.1-protein ID=NO11G03390.1-protein|Name=NO11G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSKRAAEKKEKGKKAEKGAGGRSQKALTKNRDWIEKEIIRQLSELPAGGE
TEEGVKSFLTALQEFTVSCPPSIPPPSSVPPFTSIPTTITTTTSPSPIFT
LAETLQLINLRPVAPVEVHLIIEECVERLSDEEVERLCELVAIHLGGGQG
EEAGEGEEEGGGVS*
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Synonyms
Publications