NO11G03390.1, NO11G03390.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G03390.1
Unique Name	NO11G03390.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	816
Alignment location	chr11:1087096..1088460 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:1087096..1088460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO11G03390.1 vs.

BLAST of NO11G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G03390	NO11G03390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G03390.1	NO11G03390.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G03390.1.cds1	NO11G03390.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G03390.1.cds2	NO11G03390.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G03390.1.cds3	NO11G03390.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G03390.1.cds4	NO11G03390.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:1087096..1088460-
coding sequence from alignment at chr11:1087096..1088460-

mRNA sequence

>NO11G03390.1 ID=NO11G03390.1|Name=NO11G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
CGTATGTGCACGTGGCGCTCTTCCCTCTCGTGAGGTCGAAACTCTCCTTT
TGGAGACGCCTCCCTTCCCTCCATCTCTCCCTCCCTCCCCGTTCCTATCA
CCTAGTCCATGTCCCTCCCCAATTCCCTCTCCCCCCTTGCCGTCGCTTAC
TGTCATTACCTTCTTTCCCTTGTTCTATCCCCTCGCCCTCCTGCGATGGC
CCCATCCTTCCCTCCCTAGCCTTTCCACTAACGACGGCCTTCTCACGGAT
CTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGCGGA
GAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGTCAC
AGAAGGCGTTGACCAAAAACAGGGACTGGATCGAGAAGGAGATCATAAGA
CAGCTGTCGGAATTGCCCGCTGGAGGAGAGACCGAAGAAGGAGTCAAGTC
TTTCCTCACGGCCCTCCAAGAATTCACGGTATCCTGCCCTCCGTCCATCC
CTCCCCCCTCCTCCGTCCCTCCCTTCACCTCCATCCCCACCACTATCACC
ACCACCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACT
CATAAATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGATCATCGAGG
AGTGCGTCGAGCGCCTGAGCGACGAGGAGGTAGAACGGTTGTGCGAGCTG
GTGGCCATCCATCTTGGCGGGGGGCAGGGGGAGGAAGCAGGCGAGGGAGA
GGAGGAAGGAGGGGGGGTGAGTTGAGAGGCATGTAAAGAAAAAGAGGGGA
ACAAAGAGTAATGGGG

protein sequence of NO11G03390.1

>NO11G03390.1-protein ID=NO11G03390.1-protein|Name=NO11G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSKRAAEKKEKGKKAEKGAGGRSQKALTKNRDWIEKEIIRQLSELPAGGE
TEEGVKSFLTALQEFTVSCPPSIPPPSSVPPFTSIPTTITTTTSPSPIFT
LAETLQLINLRPVAPVEVHLIIEECVERLSDEEVERLCELVAIHLGGGQG
EEAGEGEEEGGGVS*

mRNA from alignment at chr11:1087096..1088460-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G03390.1 ID=NO11G03390.1|Name=NO11G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at chr11:1087096..1088460- (Nannochloropsis oceanica)
CGTATGTGCACGTGGCGCTCTTCCCTCTCGTGAGGTCGAAACTCTCCTTT
TGGAGACGCCTCCCTTCCCTCCATCTCTCCCTCCCTCCCCGTTCCTATCA
CCTAGTCCATGTCCCTCCCCAATTCCCTCTCCCCCCTTGCCGTCGCTTAC
TGTCATTACCTTCTTTCCCTTGTTCTATCCCCTCGCCCTCCTGCGATGGC
CCCATCCTTCCCTCCCTAGCCTTTCCACTAACGACGGCCTTCTCACGGAT
CTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGCGGA
GAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGTCAC
AGAAGGCGTTGACCAAAAACAGGGACTGGATCGAGAAGGAGGTGGGAAGG
AGGGAGGAAGGGAAGGATGGATGGAGGGACAGGAGCACTGGAGGGGAGGG
AGAGCAAGTGAGGGGTGAGGTGATGGCTGACGATGTCCTTTTTCCCTTAC
CCTGAATCTCCTTGTATCCCCCCTTCCTCTCTTTCTCCCACCCTTTCTTT
CTCACGCAACAGATCATAAGACAGCTGTCGGAATTGCCCGCTGGAGGAGA
GACCGAAGAAGGAGTCAAGGTACGCAGGCAGGCGCTTGCCCTCCCACCTT
CTCTCCTTCCCTCCTTCCCTTCCCCCCGCCCGCTTTCCACATGCACCACC
CTGAGCTTGTCTAATGTCTGGATCTCTCATAAAAATGCTCCCATTTCACA
CAACGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCAGTCTTTC
CTCACGGCCCTCCAAGAATTCACGGTATCCTGCCCTCCGTCCATCCCTCC
CCCCTCCTCCGTCCCTCCCTTCACCTCCATCCCCACCACTATCACCACCA
CCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACTCATA
AATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGGTAGGTACGTAGGG
AGGGAGGGAAGGAGGTAGGGAGGTAGGATGGGAGGGAGAGGGGGTAGGGA
CTTATGCTGAAAAGTTGTGACTGTCGTCTGGTTTAATTTTCATCTGTTGA
TGACCTTATCCACCCTTCCTCCTTCCTTCTTTCCCACCTCTCCCTCCCTC
CCTCCCTCGCTCCCTCCCTCCCTCTCCTTCCGTCTCCAGATCATCGAGGA
GTGCGTCGAGCGCCTGAGCGACGAGGAGGTAGAACGGTTGTGCGAGCTGG
TGGCCATCCATCTTGGCGGGGGGCAGGGGGAGGAAGCAGGCGAGGGAGAG
GAGGAAGGAGGGGGGGTGAGTTGAGAGGCATGTAAAGAAAAAGAGGGGAA
CAAAGAGTAATGGGG

Coding sequence (CDS) from alignment at chr11:1087096..1088460-

>NO11G03390.1 ID=NO11G03390.1|Name=NO11G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr11:1087096..1088460- (Nannochloropsis oceanica)
ATGTCCAAACGCGCCGCGGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAAA
AGGAGCCGGGGGTCGGTCACAGAAGGCGTTGACCAAAAACAGGGACTGGA
TCGAGAAGGAGATCATAAGACAGCTGTCGGAATTGCCCGCTGGAGGAGAG
ACCGAAGAAGGAGTCAAGTCTTTCCTCACGGCCCTCCAAGAATTCACGGT
ATCCTGCCCTCCGTCCATCCCTCCCCCCTCCTCCGTCCCTCCCTTCACCT
CCATCCCCACCACTATCACCACCACCACCTCCCCCTCCCCCATTTTCACC
CTCGCCGAGACGTTACAACTCATAAATCTTCGGCCCGTAGCACCCGTGGA
GGTACATTTGATCATCGAGGAGTGCGTCGAGCGCCTGAGCGACGAGGAGG
TAGAACGGTTGTGCGAGCTGGTGGCCATCCATCTTGGCGGGGGGCAGGGG
GAGGAAGCAGGCGAGGGAGAGGAGGAAGGAGGGGGGGTGAGTTGA

Synonyms

Publications