NO11G03390.3, NO11G03390.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03390.3
Unique NameNO11G03390.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr11:1087096..1088587 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1087096..1088587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G03390.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03390NO11G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03390.3NO11G03390.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03390.3.cds1NO11G03390.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03390.3.cds2NO11G03390.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03390.3.cds3NO11G03390.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03390.3.cds4NO11G03390.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03390.3 ID=NO11G03390.3|Name=NO11G03390.3|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
AACAGTAGGCAAGCCGGGCACTTACGTTCATCTCCCCACCACCAGAAGAG
GTCAATCCTGAACTCCGACCCTGCAGCTGCTCTACCGAGCGAAGATCCCT
AAATTGTGCCACTGAAATGGAAATCCTTTCCACTAACGACGGCCTTCTCA
CGGATCTGGATGCCTACCAACTAATCAAAGAGCGGATGTCCAAACGCGCC
GCGGAGAAAAAAGAAAAAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCG
GTCACAGAAGGCGTTGACCAAAAACAGGGACTGGATCGAGAAGGAGATCA
TAAGACAGCTGTCGGAATTGCCCGCTGGAGGAGAGACCGAAGAAGGAGTC
AAGTCTTTCCTCACGGCCCTCCAAGAATTCACGGTATCCTGCCCTCCGTC
CATCCCTCCCCCCTCCTCCGTCCCTCCCTTCACCTCCATCCCCACCACTA
TCACCACCACCACCTCCCCCTCCCCCATTTTCACCCTCGCCGAGACGTTA
CAACTCATAAATCTTCGGCCCGTAGCACCCGTGGAGGTACATTTGGTAGG
TACGTAGGGAGGGAGGGAAGGAGGTAGGGAGGTAGGATGGGAGGGAGAGG
GGGTAGGGACTTATGCTGAAAAGTTGTGACTGTCGTCTGGTTTAATTTTC
ATCTGTTGATGACCTTATCCACCCTTCCTCCTTCCTTCTTTCCCACCTCT
CCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCTCCTTCCGTCTCCAGAT
CATCGAGGAGTGCGTCGAGCGCCTGAGCGACGAGGAGGTAGAACGGTTGT
GCGAGCTGGTGGCCATCCATCTTGGCGGGGGGCAGGGGGAGGAAGCAGGC
GAGGGAGAGGAGGAAGGAGGGGGGGTGAGTTGAGAGGCATGTAAAGAAAA
AGAGGGGAACAAAGAGTAATGGGG
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protein sequence of NO11G03390.3

>NO11G03390.3-protein ID=NO11G03390.3-protein|Name=NO11G03390.3|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MEILSTNDGLLTDLDAYQLIKERMSKRAAEKKEKGKKAEKGAGGRSQKAL
TKNRDWIEKEIIRQLSELPAGGETEEGVKSFLTALQEFTVSCPPSIPPPS
SVPPFTSIPTTITTTTSPSPIFTLAETLQLINLRPVAPVEVHLVGT*
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mRNA from alignment at chr11:1087096..1088587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03390.3 ID=NO11G03390.3|Name=NO11G03390.3|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr11:1087096..1088587- (Nannochloropsis oceanica)
AACAGTAGGCAAGCCGGGCACTTACGTTCATCTCCCCACCACCAGAAGAG GTCAATCCTGAACTCCGACCCTGCAGCTGCTCTACCGAGCGAAGATCCCT AAATTGTGCCACTGAAATGGAAATGTACGTATGTGCACGTGGCGCTCTTC CCTCTCGTGAGGTCGAAACTCTCCTTTTGGAGACGCCTCCCTTCCCTCCA TCTCTCCCTCCCTCCCCGTTCCTATCACCTAGTCCATGTCCCTCCCCAAT TCCCTCTCCCCCCTTGCCGTCGCTTACTGTCATTACCTTCTTTCCCTTGT TCTATCCCCTCGCCCTCCTGCGATGGCCCCATCCTTCCCTCCCTAGCCTT TCCACTAACGACGGCCTTCTCACGGATCTGGATGCCTACCAACTAATCAA AGAGCGGATGTCCAAACGCGCCGCGGAGAAAAAAGAAAAAGGGAAAAAGG CAGAAAAAGGAGCCGGGGGTCGGTCACAGAAGGCGTTGACCAAAAACAGG GACTGGATCGAGAAGGAGGTGGGAAGGAGGGAGGAAGGGAAGGATGGATG GAGGGACAGGAGCACTGGAGGGGAGGGAGAGCAAGTGAGGGGTGAGGTGA TGGCTGACGATGTCCTTTTTCCCTTACCCTGAATCTCCTTGTATCCCCCC TTCCTCTCTTTCTCCCACCCTTTCTTTCTCACGCAACAGATCATAAGACA GCTGTCGGAATTGCCCGCTGGAGGAGAGACCGAAGAAGGAGTCAAGGTAC GCAGGCAGGCGCTTGCCCTCCCACCTTCTCTCCTTCCCTCCTTCCCTTCC CCCCGCCCGCTTTCCACATGCACCACCCTGAGCTTGTCTAATGTCTGGAT CTCTCATAAAAATGCTCCCATTTCACACAACGACCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCTCAGTCTTTCCTCACGGCCCTCCAAGAATTCAC GGTATCCTGCCCTCCGTCCATCCCTCCCCCCTCCTCCGTCCCTCCCTTCA CCTCCATCCCCACCACTATCACCACCACCACCTCCCCCTCCCCCATTTTC ACCCTCGCCGAGACGTTACAACTCATAAATCTTCGGCCCGTAGCACCCGT GGAGGTACATTTGGTAGGTACGTAGGGAGGGAGGGAAGGAGGTAGGGAGG TAGGATGGGAGGGAGAGGGGGTAGGGACTTATGCTGAAAAGTTGTGACTG TCGTCTGGTTTAATTTTCATCTGTTGATGACCTTATCCACCCTTCCTCCT TCCTTCTTTCCCACCTCTCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCT CTCCTTCCGTCTCCAGATCATCGAGGAGTGCGTCGAGCGCCTGAGCGACG AGGAGGTAGAACGGTTGTGCGAGCTGGTGGCCATCCATCTTGGCGGGGGG CAGGGGGAGGAAGCAGGCGAGGGAGAGGAGGAAGGAGGGGGGGTGAGTTG AGAGGCATGTAAAGAAAAAGAGGGGAACAAAGAGTAATGGGG
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Coding sequence (CDS) from alignment at chr11:1087096..1088587-

>NO11G03390.3 ID=NO11G03390.3|Name=NO11G03390.3|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at chr11:1087096..1088587- (Nannochloropsis oceanica)
ATGGAAATCCTTTCCACTAACGACGGCCTTCTCACGGATCTGGATGCCTA
CCAACTAATCAAAGAGCGGATGTCCAAACGCGCCGCGGAGAAAAAAGAAA
AAGGGAAAAAGGCAGAAAAAGGAGCCGGGGGTCGGTCACAGAAGGCGTTG
ACCAAAAACAGGGACTGGATCGAGAAGGAGATCATAAGACAGCTGTCGGA
ATTGCCCGCTGGAGGAGAGACCGAAGAAGGAGTCAAGTCTTTCCTCACGG
CCCTCCAAGAATTCACGGTATCCTGCCCTCCGTCCATCCCTCCCCCCTCC
TCCGTCCCTCCCTTCACCTCCATCCCCACCACTATCACCACCACCACCTC
CCCCTCCCCCATTTTCACCCTCGCCGAGACGTTACAACTCATAAATCTTC
GGCCCGTAGCACCCGTGGAGGTACATTTGGTAGGTACGTAG
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Synonyms
Publications