NO11G03040, NO11G03040 (gene) Nannochloropsis oceanica

Overview
NameNO11G03040
Unique NameNO11G03040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3177
Alignment locationchr11:952850..956026 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:952850..956026 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
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BLAST of NO11G03040 vs. NCBI_GenBank
Match: XP_005854160.1 (hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526] >EKU22202.1 hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 853.6 bits (2204), Expect = 3.400e-244
Identity = 431/551 (78.22%), Postives = 483/551 (87.66%), Query Frame = 0 
Query:    1 MTSSETALA--TTTHPRAEAIKKLLIWCRKTSPNFMIKEQLVGFKTLPDGTVTAVALKDIPADTRLIRVTPELMFSARDLKRKWRSVFNEIESKVRRYTETCTAGFLTGTEAEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKE-AEEGKALKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA 549
            MTS+ T LA     HPRA+ + KL+ WC+KTSPNFMI+EQ VGFKT  DG VTAVALKDIPAD  LIRVTPELMFSARDLKRKWR+V+NEIESK+RRYT TCTAGFL GTEAEEPATTMAL+FALLLE+GDP+SKWKPYW+SFP+ VP+IFDFDGDYSHL+GSPW+EQLE KQ AM HILKEI+PPIL+KIKGKLGVDDV+GTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLD+IDGESDKLSNVIVDDGPGSTAMH+EL+LKSSRKIEAG+EL QMYDSCSN+SYLHWYGYITDSMVFGNLSHKT++TT QL ATAL AVE+E A EGK   + E+KKEVE +  +KK LL RI G   AGG R SLELTHRSEVFEEAA VL  IAKIALCPSLE +  +  SL S DIK++L+NA +++TGM+GETLAPVA+GAVE++L QLRHGDSYL DMVALDK+G KE++RLLIKVRMSEKFLLLRARAEVCK+LG+ DRHERPRVCDNCATF  LRACGHCGTTAYCSRRCQV+KW+EHKK V      S+ A
Sbjct:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTE-ERKKEVEAMTALKKDLLSRIAGKERAGG-RRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSVA 549
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BLAST of NO11G03040 vs. NCBI_GenBank
Match: EWM24900.1 (Zinc finger, MYND-type [Nannochloropsis gaditana])

HSP 1 Score: 852.4 bits (2201), Expect = 7.600e-244
Identity = 430/549 (78.32%), Postives = 482/549 (87.80%), Query Frame = 0 
Query:    1 MTSSETALA--TTTHPRAEAIKKLLIWCRKTSPNFMIKEQLVGFKTLPDGTVTAVALKDIPADTRLIRVTPELMFSARDLKRKWRSVFNEIESKVRRYTETCTAGFLTGTEAEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKE-AEEGKALKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVST 547
            MTS+ T LA     HPRA+ + KL+ WC+KTSPNFMI+EQ VGFKT  DG VTAVALKDIPAD  LIRVTPELMFSARDLKRKWR+V+NEIESK+RRYT TCTAGFL GTEAEEPATTMAL+FALLLE+GDP+SKWKPYW+SFP+ VP+IFDFDGDYSHL+GSPW+EQLE KQ AM HILKEI+PPIL+KIKGKLGVDDV+GTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLD+IDGESDKLSNVIVDDGPGSTAMH+EL+LKSSRKIEAG+EL QMYDSCSN+SYLHWYGYITDSMVFGNLSHKT++TT QL ATAL AVE+E A EGK   + E+KKEVE +  +KK LL RI G   AGG R SLELTHRSEVFEEAA VL  IAKIALCPSLE +  +  SL S DIK++L+NA +++TGM+GETLAPVA+GAVE++L QLRHGDSYL DMVALDK+G KE++RLLIKVRMSEKFLLLRARAEVCK+LG+ DRHERPRVCDNCATF  LRACGHCGTTAYCSRRCQV+KW+EHKK V      S+
Sbjct:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTE-ERKKEVEAMTALKKDLLSRIAGKERAGG-RRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSS 547
The following BLAST results are available for this feature:
BLAST of NO11G03040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854160.13.400e-24478.22hypothetical protein NGA_0212500 [Nannochloropsis ... [more]
EWM24900.17.600e-24478.32Zinc finger, MYND-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001946NSK001946Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03040.1NO11G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G03040.2NO11G03040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591745gene_5207Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100116g14gene5589Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03040.1NO11G03040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G03040.2NO11G03040.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03040 ID=NO11G03040|Name=NO11G03040|organism=Nannochloropsis oceanica|type=gene|length=3177bp
CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC
CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA
GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA
GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA
GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC
AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT
CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC
ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA
AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA
GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT
CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA
AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA
GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG
CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG
CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA
TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT
TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC
AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT
TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT
CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA
GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG
ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG
CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC
GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA
AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA
GATGACGTCGgtacgtggactggaagaaaggcatgcagggagggagaggt
gtggtgatttgcaaacccataaatggtgacgacgtccacccctcttgtcc
ctcccccccctccccccccttccttgacagATGGTACCCTCAAGCGCGCA
TACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGACGTACACAACAAGCG
AGCCCAGTACTTGGTGCCGGTGCTGGACATGATCGACGGgtgagggagga
agggatgggggcgggggggaagggaggaaggggaaaataataatagactt
tttgacttgcctcgttctcatttgtatgtatataccagtagcgacgctcg
aaaaaccagaagggattgttgtctcatcgcctccctccctccctccctgt
tcttcctcccacagCGAGAGCGACAAGCTCAGCAACGTCATTGTTGACGA
CGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAGCAGCC
GCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGTGCTCC
AACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATGGTTTT
CGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATGCGCGA
CTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCTTGAAA
GATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAAAAGGC
GCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACGCATGT
CGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTCTTGTC
CTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACGATGAG
GGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCTCCAAA
ATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCACCCGTG
GCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGGGACTC
GTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGAGTCTG
ACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTATTGCGG
GCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCACGAACG
ACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGCTTGCG
GGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGCTAAAG
TGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCGACGGC
GGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGAGGGTG
GGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAGAAGGA
AGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATGATGGA
GCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTGGAAGC
TTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTCGCACC
CACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGATAGAGC
TGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACACCACAA
TAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGATGACG
GAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGCACCAA
TCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCTAATAA
ATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAATGCTT
ACAAAGGGGATGACGGGAGATGCGACC
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protein sequence of NO11G03040.1

>NO11G03040.1-protein ID=NO11G03040.1-protein|Name=NO11G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MTSSETALATTTHPRAEAIKKLLIWCRKTSPNFMIKEQLVGFKTLPDGTV
TAVALKDIPADTRLIRVTPELMFSARDLKRKWRSVFNEIESKVRRYTETC
TAGFLTGTEAEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFD
FDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDG
TLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPG
STAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNL
SHKTYITTKQLCATALAAVEKEAEEGKALKDAEKKKEVEEICEIKKALLM
RIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALS
ESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLH
DMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRV
CDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA*
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protein sequence of NO11G03040.2

>NO11G03040.2-protein ID=NO11G03040.2-protein|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MKLSPRSAGTRRHAQQASLLALSKFRGARMGCASIRQFFWAYRFSIDCLV
LLQCTPPFSSLPLLVFLLPFSLPHNPSSPIRAEEPATTMALAFALLLELG
DPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHIL
KEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVP
VLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDS
CSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKEAEEGKA
LKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAA
LVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLA
PVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLL
LRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQV
LKWKEHKKGVAAAGAVSTAA*
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Synonyms
Publications