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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:952850..956026 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03040.2 vs.
Match: XP_005854160.1 (hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526]; EKU22202.1 hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 691.4 bits (1783), Expect = 2.100e-195 Identity = 347/440 (78.86%), Postives = 390/440 (88.64%), Query Frame = 0
Query: 82 AEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKE-AEEGKALKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA 521
AEEPATTMAL+FALLLE+GDP+SKWKPYW+SFP+ VP+IFDFDGDYSHL+GSPW+EQLE KQ AM HILKEI+PPIL+KIKGKLGVDDV+GTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLD+IDGESDKLSNVIVDDGPGSTAMH+EL+LKSSRKIEAG+EL QMYDSCSN+SYLHWYGYITDSMVFGNLSHKT++TT QL ATAL AVE+E A EGK + E+KKEVE + +KK LL RI G AGG R SLELTHRSEVFEEAA VL IAKIALCPSLE + + SL S DIK++L+NA +++TGM+GETLAPVA+GAVE++L QLRHGDSYL DMVALDK+G KE++RLLIKVRMSEKFLLLRARAEVCK+LG+ DRHERPRVCDNCATF LRACGHCGTTAYCSRRCQV+KW+EHKK V S+ A
Sbjct: 112 AEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTE-ERKKEVEAMTALKKDLLSRIAGKERAGG-RRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSVA 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA GATGACGTCGATGGTACCCTCAAGCGCGCATACGGGCTGTGGCAGTCCCG GCAGCTAAAAGACGACGTACACAACAAGCGAGCCCAGTACTTGGTGCCGG TGCTGGACATGATCGACGGCGAGAGCGACAAGCTCAGCAACGTCATTGTT GACGACGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAG CAGCCGCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGT GCTCCAACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATG GTTTTCGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATG CGCGACTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCT TGAAAGATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAA AAGGCGCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACG CATGTCGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTC TTGTCCTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACG ATGAGGGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCT CCAAAATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCAC CCGTGGCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGG GACTCGTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGA GTCTGACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTAT TGCGGGCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCAC GAACGACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGC TTGCGGGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGC TAAAGTGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCG ACGGCGGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGA GGGTGGGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAG AAGGAAGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATG ATGGAGCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTG GAAGCTTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTC GCACCCACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGAT AGAGCTGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACAC CACAATAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGA TGACGGAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGC ACCAATCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCT AATAAATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAA TGCTTACAAAGGGGATGACGGGAGATGCGACC back to topprotein sequence of NO11G03040.2 >NO11G03040.2-protein ID=NO11G03040.2-protein|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp MKLSPRSAGTRRHAQQASLLALSKFRGARMGCASIRQFFWAYRFSIDCLV LLQCTPPFSSLPLLVFLLPFSLPHNPSSPIRAEEPATTMALAFALLLELG DPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHIL KEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVP VLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDS CSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKEAEEGKA LKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAA LVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLA PVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLL LRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQV LKWKEHKKGVAAAGAVSTAA* back to topmRNA from alignment at chr11:952850..956026+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=mRNA|length=3177bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica) CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC
CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA
GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA
GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA
GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC
AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT
CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC
ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA
AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA
GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT
CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA
AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA
GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG
CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG
CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA
TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT
TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC
AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT
TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT
CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA
GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG
ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG
CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC
GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA
AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA
GATGACGTCGGTACGTGGACTGGAAGAAAGGCATGCAGGGAGGGAGAGGT
GTGGTGATTTGCAAACCCATAAATGGTGACGACGTCCACCCCTCTTGTCC
CTCCCCCCCCTCCCCCCCCTTCCTTGACAGATGGTACCCTCAAGCGCGCA
TACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGACGTACACAACAAGCG
AGCCCAGTACTTGGTGCCGGTGCTGGACATGATCGACGGGTGAGGGAGGA
AGGGATGGGGGCGGGGGGGAAGGGAGGAAGGGGAAAATAATAATAGACTT
TTTGACTTGCCTCGTTCTCATTTGTATGTATATACCAGTAGCGACGCTCG
AAAAACCAGAAGGGATTGTTGTCTCATCGCCTCCCTCCCTCCCTCCCTGT
TCTTCCTCCCACAGCGAGAGCGACAAGCTCAGCAACGTCATTGTTGACGA
CGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAGCAGCC
GCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGTGCTCC
AACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATGGTTTT
CGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATGCGCGA
CTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCTTGAAA
GATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAAAAGGC
GCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACGCATGT
CGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTCTTGTC
CTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACGATGAG
GGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCTCCAAA
ATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCACCCGTG
GCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGGGACTC
GTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGAGTCTG
ACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTATTGCGG
GCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCACGAACG
ACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGCTTGCG
GGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGCTAAAG
TGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCGACGGC
GGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGAGGGTG
GGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAGAAGGA
AGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATGATGGA
GCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTGGAAGC
TTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTCGCACC
CACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGATAGAGC
TGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACACCACAA
TAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGATGACG
GAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGCACCAA
TCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCTAATAA
ATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAATGCTT
ACAAAGGGGATGACGGGAGATGCGACC back to topCoding sequence (CDS) from alignment at chr11:952850..956026+ >NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica) ATGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGC TTCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGT CAATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTT TTACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCT TCTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAG AGCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGT GACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGT GCCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTC CGTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTG AAGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGT AGATGACGTCGATGGTACCCTCAAGCGCGCATACGGGCTGTGGCAGTCCC GGCAGCTAAAAGACGACGTACACAACAAGCGAGCCCAGTACTTGGTGCCG GTGCTGGACATGATCGACGGCGAGAGCGACAAGCTCAGCAACGTCATTGT TGACGACGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGA GCAGCCGCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCG TGCTCCAACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCAT GGTTTTCGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTAT GCGCGACTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCC TTGAAAGATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAA AAAGGCGCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTAC GCATGTCGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCT CTTGTCCTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGAC GATGAGGGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGC TCCAAAATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCA CCCGTGGCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGG GGACTCGTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGG AGTCTGACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTA TTGCGGGCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCA CGAACGACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGG CTTGCGGGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTG CTAAAGTGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTC GACGGCGGCGTAG back to top
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