NO11G03040.2, NO11G03040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03040.2
Unique NameNO11G03040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2882
Alignment locationchr11:952850..956026 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:952850..956026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03040.2 vs.
Match: XP_005854160.1 (hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526]; EKU22202.1 hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 691.4 bits (1783), Expect = 2.100e-195
Identity = 347/440 (78.86%), Postives = 390/440 (88.64%), Query Frame = 0
Query:   82 AEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKE-AEEGKALKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA 521
            AEEPATTMAL+FALLLE+GDP+SKWKPYW+SFP+ VP+IFDFDGDYSHL+GSPW+EQLE KQ AM HILKEI+PPIL+KIKGKLGVDDV+GTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLD+IDGESDKLSNVIVDDGPGSTAMH+EL+LKSSRKIEAG+EL QMYDSCSN+SYLHWYGYITDSMVFGNLSHKT++TT QL ATAL AVE+E A EGK   + E+KKEVE +  +KK LL RI G   AGG R SLELTHRSEVFEEAA VL  IAKIALCPSLE +  +  SL S DIK++L+NA +++TGM+GETLAPVA+GAVE++L QLRHGDSYL DMVALDK+G KE++RLLIKVRMSEKFLLLRARAEVCK+LG+ DRHERPRVCDNCATF  LRACGHCGTTAYCSRRCQV+KW+EHKK V      S+ A
Sbjct:  112 AEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTE-ERKKEVEAMTALKKDLLSRIAGKERAGG-RRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSVA 549          
The following BLAST results are available for this feature:
BLAST of NO11G03040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854160.12.100e-19578.86hypothetical protein NGA_0212500 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03040NO11G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03040.2NO11G03040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03040.2.cds1NO11G03040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03040.2.cds2NO11G03040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03040.2.cds3NO11G03040.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2882bp
CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC
CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA
GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA
GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA
GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC
AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT
CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC
ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA
AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA
GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT
CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA
AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA
GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG
CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG
CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA
TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT
TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC
AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT
TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT
CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA
GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG
ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG
CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC
GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA
AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA
GATGACGTCGATGGTACCCTCAAGCGCGCATACGGGCTGTGGCAGTCCCG
GCAGCTAAAAGACGACGTACACAACAAGCGAGCCCAGTACTTGGTGCCGG
TGCTGGACATGATCGACGGCGAGAGCGACAAGCTCAGCAACGTCATTGTT
GACGACGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAG
CAGCCGCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGT
GCTCCAACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATG
GTTTTCGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATG
CGCGACTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCT
TGAAAGATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAA
AAGGCGCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACG
CATGTCGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTC
TTGTCCTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACG
ATGAGGGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCT
CCAAAATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCAC
CCGTGGCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGG
GACTCGTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGA
GTCTGACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTAT
TGCGGGCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCAC
GAACGACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGC
TTGCGGGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGC
TAAAGTGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCG
ACGGCGGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGA
GGGTGGGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAG
AAGGAAGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATG
ATGGAGCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTG
GAAGCTTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTC
GCACCCACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGAT
AGAGCTGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACAC
CACAATAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGA
TGACGGAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGC
ACCAATCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCT
AATAAATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAA
TGCTTACAAAGGGGATGACGGGAGATGCGACC
back to top

protein sequence of NO11G03040.2

>NO11G03040.2-protein ID=NO11G03040.2-protein|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MKLSPRSAGTRRHAQQASLLALSKFRGARMGCASIRQFFWAYRFSIDCLV
LLQCTPPFSSLPLLVFLLPFSLPHNPSSPIRAEEPATTMALAFALLLELG
DPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHIL
KEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVP
VLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDS
CSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKEAEEGKA
LKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAA
LVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLA
PVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLL
LRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQV
LKWKEHKKGVAAAGAVSTAA*
back to top

mRNA from alignment at chr11:952850..956026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=mRNA|length=3177bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica)
CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA GATGACGTCGGTACGTGGACTGGAAGAAAGGCATGCAGGGAGGGAGAGGT GTGGTGATTTGCAAACCCATAAATGGTGACGACGTCCACCCCTCTTGTCC CTCCCCCCCCTCCCCCCCCTTCCTTGACAGATGGTACCCTCAAGCGCGCA TACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGACGTACACAACAAGCG AGCCCAGTACTTGGTGCCGGTGCTGGACATGATCGACGGGTGAGGGAGGA AGGGATGGGGGCGGGGGGGAAGGGAGGAAGGGGAAAATAATAATAGACTT TTTGACTTGCCTCGTTCTCATTTGTATGTATATACCAGTAGCGACGCTCG AAAAACCAGAAGGGATTGTTGTCTCATCGCCTCCCTCCCTCCCTCCCTGT TCTTCCTCCCACAGCGAGAGCGACAAGCTCAGCAACGTCATTGTTGACGA CGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAGCAGCC GCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGTGCTCC AACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATGGTTTT CGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATGCGCGA CTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCTTGAAA GATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAAAAGGC GCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACGCATGT CGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTCTTGTC CTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACGATGAG GGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCTCCAAA ATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCACCCGTG GCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGGGACTC GTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGAGTCTG ACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTATTGCGG GCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCACGAACG ACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGCTTGCG GGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGCTAAAG TGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCGACGGC GGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGAGGGTG GGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAGAAGGA AGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATGATGGA GCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTGGAAGC TTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTCGCACC CACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGATAGAGC TGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACACCACAA TAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGATGACG GAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGCACCAA TCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCTAATAA ATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAATGCTT ACAAAGGGGATGACGGGAGATGCGACC
back to top

Coding sequence (CDS) from alignment at chr11:952850..956026+

>NO11G03040.2 ID=NO11G03040.2|Name=NO11G03040.2|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica)
ATGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGC
TTCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGT
CAATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTT
TTACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCT
TCTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAG
AGCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGT
GACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGT
GCCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTC
CGTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTG
AAGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGT
AGATGACGTCGATGGTACCCTCAAGCGCGCATACGGGCTGTGGCAGTCCC
GGCAGCTAAAAGACGACGTACACAACAAGCGAGCCCAGTACTTGGTGCCG
GTGCTGGACATGATCGACGGCGAGAGCGACAAGCTCAGCAACGTCATTGT
TGACGACGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGA
GCAGCCGCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCG
TGCTCCAACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCAT
GGTTTTCGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTAT
GCGCGACTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCC
TTGAAAGATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAA
AAAGGCGCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTAC
GCATGTCGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCT
CTTGTCCTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGAC
GATGAGGGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGC
TCCAAAATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCA
CCCGTGGCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGG
GGACTCGTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGG
AGTCTGACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTA
TTGCGGGCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCA
CGAACGACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGG
CTTGCGGGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTG
CTAAAGTGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTC
GACGGCGGCGTAG
back to top
Synonyms
Publications