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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:952850..956026 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03040.1 vs.
Match: XP_005854160.1 (hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526]; EKU22202.1 hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 853.6 bits (2204), Expect = 3.400e-244 Identity = 431/551 (78.22%), Postives = 483/551 (87.66%), Query Frame = 0
Query: 1 MTSSETALA--TTTHPRAEAIKKLLIWCRKTSPNFMIKEQLVGFKTLPDGTVTAVALKDIPADTRLIRVTPELMFSARDLKRKWRSVFNEIESKVRRYTETCTAGFLTGTEAEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFDFDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPGSTAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNLSHKTYITTKQLCATALAAVEKE-AEEGKALKDAEKKKEVEEICEIKKALLMRIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALSESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLHDMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRVCDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA 549
MTS+ T LA HPRA+ + KL+ WC+KTSPNFMI+EQ VGFKT DG VTAVALKDIPAD LIRVTPELMFSARDLKRKWR+V+NEIESK+RRYT TCTAGFL GTEAEEPATTMAL+FALLLE+GDP+SKWKPYW+SFP+ VP+IFDFDGDYSHL+GSPW+EQLE KQ AM HILKEI+PPIL+KIKGKLGVDDV+GTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLD+IDGESDKLSNVIVDDGPGSTAMH+EL+LKSSRKIEAG+EL QMYDSCSN+SYLHWYGYITDSMVFGNLSHKT++TT QL ATAL AVE+E A EGK + E+KKEVE + +KK LL RI G AGG R SLELTHRSEVFEEAA VL IAKIALCPSLE + + SL S DIK++L+NA +++TGM+GETLAPVA+GAVE++L QLRHGDSYL DMVALDK+G KE++RLLIKVRMSEKFLLLRARAEVCK+LG+ DRHERPRVCDNCATF LRACGHCGTTAYCSRRCQV+KW+EHKK V S+ A
Sbjct: 1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTE-ERKKEVEAMTALKKDLLSRIAGKERAGG-RRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSVA 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03040.1 ID=NO11G03040.1|Name=NO11G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp
CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC
CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA
GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA
GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA
GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC
AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT
CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC
ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA
AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA
GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT
CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA
AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA
GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG
CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG
CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA
TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT
TCCTTACTGGCACTGAGGCCGAAGAGCCCGCTACCACAATGGCCCTCGCC
TTCGCCCTCCTTCTGGAGCTGGGTGACCCTGATTCGAAGTGGAAGCCGTA
CTGGGACTCATTCCCCCAGGAGGTGCCCTCTATATTTGATTTCGATGGAG
ATTACTCTCACCTTGACGGAAGTCCGTGGAAGGAGCAGTTAGAGGCGAAG
CAGGCGGCGATGCTCCACATCTTGAAGGAGATCGTGCCCCCGATTTTGTC
TAAAATTAAGGGGAAGTTGGGGGTAGATGACGTCGATGGTACCCTCAAGC
GCGCATACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGACGTACACAAC
AAGCGAGCCCAGTACTTGGTGCCGGTGCTGGACATGATCGACGGCGAGAG
CGACAAGCTCAGCAACGTCATTGTTGACGACGGACCCGGGTCCACAGCCA
TGCACATGGAACTCATCCTCAAGAGCAGCCGCAAGATCGAGGCCGGCGAT
GAACTGCGGCAGATGTACGATTCGTGCTCCAACTCGTCTTACCTGCATTG
GTATGGATACATCACCGATAGCATGGTTTTCGGGAATTTGAGTCATAAGA
CCTATATTACGACTAAGCAGTTATGCGCGACTGCCTTGGCGGCCGTGGAG
AAGGAGGCAGAGGAAGGGAAGGCCTTGAAAGATGCCGAGAAGAAGAAGGA
GGTGGAGGAGATCTGTGAGATTAAAAAGGCGCTGTTGATGCGGATCGTGG
GAGATGGGAGCGCCGGGGGCTTACGCATGTCGCTAGAGCTGACCCACCGT
AGCGAGGTGTTTGAAGAGGCTGCTCTTGTCCTTGAGGTGATTGCCAAGAT
AGCTCTGTGTCCTTCCCTAGAGACGATGAGGGCCTTGTCGGAGTCGTTGA
AGAGCACGGACATCAAGGAACTGCTCCAAAATGCAGGGAAGCTTTTGACA
GGGATGGAGGGAGAGACCCTGGCACCCGTGGCCCTCGGGGCGGTGGAGCA
GATGCTCTCACAGCTCCGCCATGGGGACTCGTATTTGCACGACATGGTGG
CCTTGGACAAGGCAGGCCTGAAGGAGTCTGACAGGCTTTTGATTAAGGTG
CGGATGAGCGAGAAGTTTTTGTTATTGCGGGCCCGGGCAGAGGTCTGCAA
GAGGCTGGGGGTGAAGGATCGGCACGAACGACCTCGAGTCTGTGATAACT
GTGCGACGTTCCGGGGTCTGCGGGCTTGCGGGCATTGTGGGACTACTGCC
TACTGCTCCCGGCGATGCCAGGTGCTAAAGTGGAAGGAGCATAAGAAGGG
CGTGGCGGCAGCGGGGGCCGTGTCGACGGCGGCGTAGTGGAGGAGGAGGG
AGGGAGGAAGGGAGAAAGAAAGGGAGGGTGGGACAGATGGTCAGGTGGAA
GTGGGGAGATGGGCAGGGAAGAAAGAAGGAAGGCAGGGTTAGGAGACTGA
GTGACGACGTGCGGGCATTCTCATGATGGAGCCCCCATACGTATAACACC
AGCAAATTAGAAGAGGAAGAGACTGGAAGCTTGCGTGAAAAAGAGAAGGG
CGAGAGATGTCCCTTACACCAAGTCGCACCCACACAGCCGACGCAAGTAT
AGTTGAGTGTGTGTGCGGCAGAGATAGAGCTGTGCGGAGCAATAGAGGCG
TTCGTTATTTTCCATATATATACACCACAATAAATGTAACCTGCATGAGC
TAGATGTTTTCAGGTTGGTCGTCGATGACGGAGGTAGGTGAAGTGAGAGA
TGAAAAGATGCGGGTTGGAGAGAGCACCAATCAAGGATAGCTAGGCGACT
GTAAGGCAAGAACGACGGTGGCGCTAATAAATATGGTTCGGAAAGACGCA
AGGGCCAGCTAGCAACGTAGAGCAATGCTTACAAAGGGGATGACGGGAGA
TGCGACC back to topprotein sequence of NO11G03040.1 >NO11G03040.1-protein ID=NO11G03040.1-protein|Name=NO11G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MTSSETALATTTHPRAEAIKKLLIWCRKTSPNFMIKEQLVGFKTLPDGTV
TAVALKDIPADTRLIRVTPELMFSARDLKRKWRSVFNEIESKVRRYTETC
TAGFLTGTEAEEPATTMALAFALLLELGDPDSKWKPYWDSFPQEVPSIFD
FDGDYSHLDGSPWKEQLEAKQAAMLHILKEIVPPILSKIKGKLGVDDVDG
TLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDMIDGESDKLSNVIVDDGPG
STAMHMELILKSSRKIEAGDELRQMYDSCSNSSYLHWYGYITDSMVFGNL
SHKTYITTKQLCATALAAVEKEAEEGKALKDAEKKKEVEEICEIKKALLM
RIVGDGSAGGLRMSLELTHRSEVFEEAALVLEVIAKIALCPSLETMRALS
ESLKSTDIKELLQNAGKLLTGMEGETLAPVALGAVEQMLSQLRHGDSYLH
DMVALDKAGLKESDRLLIKVRMSEKFLLLRARAEVCKRLGVKDRHERPRV
CDNCATFRGLRACGHCGTTAYCSRRCQVLKWKEHKKGVAAAGAVSTAA* back to topmRNA from alignment at chr11:952850..956026+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03040.1 ID=NO11G03040.1|Name=NO11G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3177bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica)
CGTTACCCCTGCCTGTTGCAGCAACAACTTGTTGACTTGAGGGAGCGACC
CGAATCAACACGACATTGGTGGATGTGTCCTTGCTCCCGGCCTCAAATAA
GCTTTGTTGCCGTAAGGAGACTGCTCCTCATTGTATTTGTAGCTGCAGGA
GTTGCGGCACGGATTGCCCATTTGACGGTTGCAGTGGACAAATGACTCAA
GAGGACTGGCAGAGGACCCATCAACCAATTGAACTACGACTAGCAAGCTC
AAGCAAACCCCACGACGTGCCGCGTGTTTATGCGCAGCTATATTCGGCCT
CTAGACATGCATATAGTCTCCTTGCTACCTCAATCATGCAATAGTGTGGC
ATACACTTTCATGTCTTCCTCCCAACGTTGACACTAACACACACCACCTA
AAGGAGCAGAGCAATCACGTTCGAGCAACTGCCTTGTGGGTGCGGTCCAA
GCGCACGCACCACCACCAACCAAACACCATCTTAGAAATCATGACCTCCT
CGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGAGGCCATAAAA
AAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCATGATTAAGGA
GCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTGACGGCCGTTG
CTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGTCACACCTGAG
CTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTTCGGTTTTTAA
TGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGCACAGCAGGCT
TCCTTACTGGCACTGAGTAAGTTCAGAGGGGCTAGGATGGGTTGTGCGTC
AATCCGTCAATTCTTTTGGGCTTATCGCTTCTCAATCGATTGCCTCGTTT
TACTACAATGTACGCCTCCTTTTTCCTCGCTTCCACTCCTCGTATTCCTT
CTTCCCTTCTCCCTCCCCCACAACCCATCGTCACCCATCAGGGCCGAAGA
GCCCGCTACCACAATGGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTG
ACCCTGATTCGAAGTGGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTG
CCCTCTATATTTGATTTCGATGGAGATTACTCTCACCTTGACGGAAGTCC
GTGGAAGGAGCAGTTAGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGA
AGGAGATCGTGCCCCCGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTA
GATGACGTCGGTACGTGGACTGGAAGAAAGGCATGCAGGGAGGGAGAGGT
GTGGTGATTTGCAAACCCATAAATGGTGACGACGTCCACCCCTCTTGTCC
CTCCCCCCCCTCCCCCCCCTTCCTTGACAGATGGTACCCTCAAGCGCGCA
TACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGACGTACACAACAAGCG
AGCCCAGTACTTGGTGCCGGTGCTGGACATGATCGACGGGTGAGGGAGGA
AGGGATGGGGGCGGGGGGGAAGGGAGGAAGGGGAAAATAATAATAGACTT
TTTGACTTGCCTCGTTCTCATTTGTATGTATATACCAGTAGCGACGCTCG
AAAAACCAGAAGGGATTGTTGTCTCATCGCCTCCCTCCCTCCCTCCCTGT
TCTTCCTCCCACAGCGAGAGCGACAAGCTCAGCAACGTCATTGTTGACGA
CGGACCCGGGTCCACAGCCATGCACATGGAACTCATCCTCAAGAGCAGCC
GCAAGATCGAGGCCGGCGATGAACTGCGGCAGATGTACGATTCGTGCTCC
AACTCGTCTTACCTGCATTGGTATGGATACATCACCGATAGCATGGTTTT
CGGGAATTTGAGTCATAAGACCTATATTACGACTAAGCAGTTATGCGCGA
CTGCCTTGGCGGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCTTGAAA
GATGCCGAGAAGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAAAAGGC
GCTGTTGATGCGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACGCATGT
CGCTAGAGCTGACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTCTTGTC
CTTGAGGTGATTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACGATGAG
GGCCTTGTCGGAGTCGTTGAAGAGCACGGACATCAAGGAACTGCTCCAAA
ATGCAGGGAAGCTTTTGACAGGGATGGAGGGAGAGACCCTGGCACCCGTG
GCCCTCGGGGCGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGGGACTC
GTATTTGCACGACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGAGTCTG
ACAGGCTTTTGATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTATTGCGG
GCCCGGGCAGAGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCACGAACG
ACCTCGAGTCTGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGCTTGCG
GGCATTGTGGGACTACTGCCTACTGCTCCCGGCGATGCCAGGTGCTAAAG
TGGAAGGAGCATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCGACGGC
GGCGTAGTGGAGGAGGAGGGAGGGAGGAAGGGAGAAAGAAAGGGAGGGTG
GGACAGATGGTCAGGTGGAAGTGGGGAGATGGGCAGGGAAGAAAGAAGGA
AGGCAGGGTTAGGAGACTGAGTGACGACGTGCGGGCATTCTCATGATGGA
GCCCCCATACGTATAACACCAGCAAATTAGAAGAGGAAGAGACTGGAAGC
TTGCGTGAAAAAGAGAAGGGCGAGAGATGTCCCTTACACCAAGTCGCACC
CACACAGCCGACGCAAGTATAGTTGAGTGTGTGTGCGGCAGAGATAGAGC
TGTGCGGAGCAATAGAGGCGTTCGTTATTTTCCATATATATACACCACAA
TAAATGTAACCTGCATGAGCTAGATGTTTTCAGGTTGGTCGTCGATGACG
GAGGTAGGTGAAGTGAGAGATGAAAAGATGCGGGTTGGAGAGAGCACCAA
TCAAGGATAGCTAGGCGACTGTAAGGCAAGAACGACGGTGGCGCTAATAA
ATATGGTTCGGAAAGACGCAAGGGCCAGCTAGCAACGTAGAGCAATGCTT
ACAAAGGGGATGACGGGAGATGCGACC back to topCoding sequence (CDS) from alignment at chr11:952850..956026+ >NO11G03040.1 ID=NO11G03040.1|Name=NO11G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr11:952850..956026+ (Nannochloropsis oceanica)
ATGACCTCCTCGGAGACCGCCCTCGCCACCACGACACATCCGCGTGCCGA
GGCCATAAAAAAACTCCTGATCTGGTGCCGCAAGACCTCGCCTAACTTCA
TGATTAAGGAGCAGCTCGTAGGGTTCAAGACCCTGCCCGACGGAACAGTG
ACGGCCGTTGCTCTCAAGGATATCCCTGCTGACACGCGCCTCATCCGTGT
CACACCTGAGCTCATGTTCAGCGCCCGGGACCTGAAGCGCAAGTGGCGTT
CGGTTTTTAATGAAATTGAGTCCAAGGTCCGCCGGTACACGGAGACATGC
ACAGCAGGCTTCCTTACTGGCACTGAGGCCGAAGAGCCCGCTACCACAAT
GGCCCTCGCCTTCGCCCTCCTTCTGGAGCTGGGTGACCCTGATTCGAAGT
GGAAGCCGTACTGGGACTCATTCCCCCAGGAGGTGCCCTCTATATTTGAT
TTCGATGGAGATTACTCTCACCTTGACGGAAGTCCGTGGAAGGAGCAGTT
AGAGGCGAAGCAGGCGGCGATGCTCCACATCTTGAAGGAGATCGTGCCCC
CGATTTTGTCTAAAATTAAGGGGAAGTTGGGGGTAGATGACGTCGATGGT
ACCCTCAAGCGCGCATACGGGCTGTGGCAGTCCCGGCAGCTAAAAGACGA
CGTACACAACAAGCGAGCCCAGTACTTGGTGCCGGTGCTGGACATGATCG
ACGGCGAGAGCGACAAGCTCAGCAACGTCATTGTTGACGACGGACCCGGG
TCCACAGCCATGCACATGGAACTCATCCTCAAGAGCAGCCGCAAGATCGA
GGCCGGCGATGAACTGCGGCAGATGTACGATTCGTGCTCCAACTCGTCTT
ACCTGCATTGGTATGGATACATCACCGATAGCATGGTTTTCGGGAATTTG
AGTCATAAGACCTATATTACGACTAAGCAGTTATGCGCGACTGCCTTGGC
GGCCGTGGAGAAGGAGGCAGAGGAAGGGAAGGCCTTGAAAGATGCCGAGA
AGAAGAAGGAGGTGGAGGAGATCTGTGAGATTAAAAAGGCGCTGTTGATG
CGGATCGTGGGAGATGGGAGCGCCGGGGGCTTACGCATGTCGCTAGAGCT
GACCCACCGTAGCGAGGTGTTTGAAGAGGCTGCTCTTGTCCTTGAGGTGA
TTGCCAAGATAGCTCTGTGTCCTTCCCTAGAGACGATGAGGGCCTTGTCG
GAGTCGTTGAAGAGCACGGACATCAAGGAACTGCTCCAAAATGCAGGGAA
GCTTTTGACAGGGATGGAGGGAGAGACCCTGGCACCCGTGGCCCTCGGGG
CGGTGGAGCAGATGCTCTCACAGCTCCGCCATGGGGACTCGTATTTGCAC
GACATGGTGGCCTTGGACAAGGCAGGCCTGAAGGAGTCTGACAGGCTTTT
GATTAAGGTGCGGATGAGCGAGAAGTTTTTGTTATTGCGGGCCCGGGCAG
AGGTCTGCAAGAGGCTGGGGGTGAAGGATCGGCACGAACGACCTCGAGTC
TGTGATAACTGTGCGACGTTCCGGGGTCTGCGGGCTTGCGGGCATTGTGG
GACTACTGCCTACTGCTCCCGGCGATGCCAGGTGCTAAAGTGGAAGGAGC
ATAAGAAGGGCGTGGCGGCAGCGGGGGCCGTGTCGACGGCGGCGTAG back to top
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