NO11G02770, NO11G02770 (gene) Nannochloropsis oceanica

Overview
NameNO11G02770
Unique NameNO11G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr11:870141..871115 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:870141..871115 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
Homology
BLAST of NO11G02770 vs. NCBI_GenBank
Match: EWM24953.1 (hypothetical protein Naga_100148g10 [Nannochloropsis gaditana])

HSP 1 Score: 394.8 bits (1013), Expect = 2.600e-106
Identity = 201/321 (62.62%), Postives = 250/321 (77.88%), Query Frame = 0
Query:    6 ATAPPSTSKAQEEAYD-DDGALTEAGLVRAAIRSSISIYRSILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESK-QLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSS---TAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNVWGGTAFAHSLAHASLFGSFEVMKDALLFLTGARHEEPLGVAMVGLAGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQVLRQAGENE 322
            +T PPS      +A D DD   TEAG++RAA+RSSI+IYRSILFGSFPRRVPL++V+K+TDQ STAW+ YS  +GSHKE   + + Q + + KE  G A   KAQ+FG TLR A+P ++KSGFLGTAVFE+YE++KD +D+A+G D D + EA+ ST +    LS    T ++ GGLAG CHG++YVGWEH R+L+++++ V NVW GTA AHSLAHASLFGSFEV+KDALL +T ARHEEPLGV +VG AGGLAGL EE VSHLTPHWE EGV SL+ A +R+G+P+LR IS+ ALPTSLGFLAWEYGR +VLR AGE E
Sbjct:   81 STVPPS------DATDADDRGCTEAGVIRAAVRSSINIYRSILFGSFPRRVPLKTVSKITDQVSTAWDAYSVFKGSHKEATRDIEVQNRPQHKESLGTAGLHKAQLFGQTLRSAVPHMVKSGFLGTAVFEMYETSKDTLDNALGLDKDVDGEASFSTSRDVFSLSMMGITGLISGGLAGTCHGLLYVGWEHARRLINAQHVVANVWTGTALAHSLAHASLFGSFEVLKDALLAITHARHEEPLGVFVVGAAGGLAGLVEETVSHLTPHWEKEGVSSLRAAFKRNGLPRLRVISSAALPTSLGFLAWEYGRHRVLRCAGEEE 395          
BLAST of NO11G02770 vs. NCBI_GenBank
Match: OQR98734.1 (hypothetical protein THRCLA_06683, partial [Thraustotheca clavata])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 73/295 (24.75%), Postives = 133/295 (45.08%), Query Frame = 0
Query:   30 GLVRAAIRSSISIYR--SILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNVWG----GTAFAHSLAHASLFGSFEVMKDALL-FLTGARHEEPLGVAMVG----LAGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQV 314
            G +R+A+R+ ++  R  + + GSFPR VP ++VA  +D  S   +   +++ + KE + + K  + K       A+W             +P +++S  LG+A +  YE T   +  +I            +      +    +++ GG+AG+ HG +   W    +L+ S     + +G    G   +H+  H ++F S+E  K  LL  +    H E   V   G    ++  ++GL  E +SH    +E   +      I+  G P L+ ++  A  T LG+LA+EY +  V
Sbjct:   26 GAMRSALRTLVTKLRLQNPIVGSFPRTVPSKTVASASDNLSFLMDITGYVKEA-KEQLDQQKSPKAKVSTLTKWALWT-----------WVPNIVRSSILGSATWASYEMTTSALQPSI------------APQNMVAYTFGVSLIAGGVAGSLHGSL---WSTSEKLLAS--IKQSAFGYRILGILLSHTSTHIAMFSSYEGTKAMLLDTIVPVEHREDPSVVETGSCILISAAVSGLIGEVMSHYIAPFEQNTMKEALSEIKTLGRPTLQLMAPSAFSTMLGWLAYEYAKDLV 291          
BLAST of NO11G02770 vs. NCBI_GenBank
Match: XP_008616076.1 (hypothetical protein SDRG_11800 [Saprolegnia diclina VS20] >EQC30483.1 hypothetical protein SDRG_11800 [Saprolegnia diclina VS20])

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-13
Identity = 80/308 (25.97%), Postives = 137/308 (44.48%), Query Frame = 0
Query:   14 KAQEEAYDDDGALTEAGLVRAAIRSSISIYR--SILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNVWGGTAFAHSLAHASLFGSFEVMKDALL-FLTGARHEEPLGVAMVG----LAGGLAGLCEEAVSH-LTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQV 314
            +  E +   D A+   G +R+ +RS +   R  + + GSFPR VP+++VA  +D  S   +   +++ + KE + + +  Q K       A+W             +P L++S  LG+A +  YE T + +       P    +   +   G       A+V GG+AGA HG ++   E    +   + A      G   +H+  H ++F S+E  K  LL  +  + H+E     + G     A   +GL  E V+H + P  +     S+K A      P LR ++  A  T LG+LA+E+ +  V
Sbjct:    9 ETDESSTSSDAAV--GGAMRSGLRSMVMRLRLQNPIVGSFPRTVPVKAVASASDNLSLLMDVTGYVKEA-KEQLDQHRSPQAKVATLTKWAMWT-----------WVPNLVRSSLLGSATWASYELTTNAL------TPSQTPQNVVACTFG------VALVAGGVAGALHGSLWTATEE-LLVRIKQTASGYSLRGVLLSHTTTHVAMFSSYEATKATLLESVVPSEHKEDRSAVVTGACIVAAAATSGLVGEVVTHYIAPFEQAPFRASVKEAAAL-ARPTLRGMAPSAFSTLLGWLAYEFAKDMV 288          
BLAST of NO11G02770 vs. NCBI_GenBank
Match: OQR97899.1 (hypothetical protein ACHHYP_09678 [Achlya hypogyna])

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-13
Identity = 79/309 (25.57%), Postives = 134/309 (43.37%), Query Frame = 0
Query:   18 EAYDDDGALTEA---GLVRAAIRSSISIYR--SILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNV---WGGTAFAHSLAHASLFGSFEVMKDALL-FLTGARHEEPLGVAMVG----LAGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQV 314
            E  DD  + ++A   G +R+A+RS +   R  + + GSFPR VP+++VA  +D  S   +   +++ + KE + + +  + K       AVW             +P +++S  LG+A +  YE             P         T+         A+V GG+AG+ HG ++   EH    + SR   T+      G   +H+  H ++F ++E  K  LL F+    H+E     + G     A   +GL  E V+H    +E   V            P LR ++  A  T LG+LA+E+ +  +
Sbjct:    6 EIDDDSNSSSDAAVGGAMRSALRSLVMRIRLQNPIVGSFPRTVPVKAVASASDNLSFLMDVSGYVKEA-KEQLDQHRSPRAKVSSLTKWAVWT-----------WVPNILRSSLLGSATWASYEMA------TTALLPQEPQHVIAYTF-------GVALVAGGVAGSLHGSLWSASEH----LISRLKQTSYGYHLPGVLLSHTTTHMAMFSAYEGTKATLLEFIVPVEHKEDRSEVVTGTCIVAAAATSGLVGEVVTHYIAPFEQVRVKDALAEAAALARPSLRGMAPSAFSTMLGWLAYEFAKDLI 285          
BLAST of NO11G02770 vs. NCBI_GenBank
Match: XP_012206661.1 (hypothetical protein SPRG_12283 [Saprolegnia parasitica CBS 223.65] >KDO22654.1 hypothetical protein SPRG_12283 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12
Identity = 77/294 (26.19%), Postives = 133/294 (45.24%), Query Frame = 0
Query:   30 GLVRAAIRSSISIYR--SILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNVWG--GTAFAHSLAHASLFGSFEVMKDALL-FLTGARHEEPLGVAMVG----LAGGLAGLCEEAVSH-LTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQV 314
            G +R+ +RS +   R  + + GSFPR VP+++VA  +D  S   +   +++ + KE + + +  Q K       A+W             +P L++S  LG+A +  YE + + +       P    +   +   G       A+V GG+AGA HG ++   E    LM  +   T+ +   G   +H+  H ++F ++E  K  LL  +  + H+E     + G     A   +GL  E  +H + P  +     SLK A      P LR ++  A  T LG+LA+E+ +  V
Sbjct:   16 GAMRSGLRSMVMRLRLQNPIVGSFPRTVPVKAVASASDNLSLLMDVTGYVKEA-KEQLDQHRSPQAKVATLTKWAMWT-----------WVPNLVRSSLLGSATWASYELSTNAL------TPSQTPQNVVACTFG------VALVAGGVAGALHGSLWTATE--ELLMRIKQTATSGYNLRGVLLSHTTTHVAMFSTYEGTKATLLESVVPSEHKEDRSAVVTGACIVAAAATSGLVGEVATHYIAPFEQAPFNESLKEAAAL-ARPTLRGMAPSAFSTLLGWLAYEFAKDMV 282          
The following BLAST results are available for this feature:
BLAST of NO11G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24953.12.600e-10662.62hypothetical protein Naga_100148g10 [Nannochlorops... [more]
OQR98734.12.500e-1324.75hypothetical protein THRCLA_06683, partial [Thraus... [more]
XP_008616076.19.700e-1325.97hypothetical protein SDRG_11800 [Saprolegnia dicli... [more]
OQR97899.19.700e-1325.57hypothetical protein ACHHYP_09678 [Achlya hypogyna... [more]
XP_012206661.12.200e-1226.19hypothetical protein SPRG_12283 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001998NSK001998Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02770.1NO11G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591641gene_5177Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100148g10gene5536Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02770.1NO11G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02770 ID=NO11G02770|Name=NO11G02770|organism=Nannochloropsis oceanica|type=gene|length=975bp
ATGCCGTCCGTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGA
GGAGGCGTACGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAG
CCGCCATTCGGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGC
TTTCCCCGCCGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGC
GTCGACGGCATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAG
TCGTTACGGAGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGA
GGGGCCGTTTGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGC
GCTACCACCCTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAAT
TGTACGAATCAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCG
GACGGTGAGGCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCT
GTCGTCGACGGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGG
TGATGTATGTGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATAT
GCTGTGACGAATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCA
TGCGTCATTGTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCT
TGACGGGGGCGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTT
GCCGGTGGGTTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCC
GCATTGGGAAGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGC
ATGGTATGCCTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGC
TTGGGGTTTTTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGC
GGGGGAGAACGAAGAGGAAGGCTGA
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protein sequence of NO11G02770.1

>NO11G02770.1-protein ID=NO11G02770.1-protein|Name=NO11G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPSVPATAPPSTSKAQEEAYDDDGALTEAGLVRAAIRSSISIYRSILFGS
FPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHG
GAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDP
DGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRY
AVTNVWGGTAFAHSLAHASLFGSFEVMKDALLFLTGARHEEPLGVAMVGL
AGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTS
LGFLAWEYGRSQVLRQAGENEEEG*
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Synonyms
Publications