NO11G02770.1, NO11G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02770.1
Unique NameNO11G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr11:870141..871115 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:870141..871115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02770.1 vs.
Match: EWM24953.1 (hypothetical protein Naga_100148g10 [Nannochloropsis gaditana])

HSP 1 Score: 394.8 bits (1013), Expect = 2.600e-106
Identity = 201/321 (62.62%), Postives = 250/321 (77.88%), Query Frame = 0
Query:    6 ATAPPSTSKAQEEAYD-DDGALTEAGLVRAAIRSSISIYRSILFGSFPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESK-QLQQKQKEGHGGAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDPDGEAEAATSTWKGTIFLSS---TAVVCGGLAGACHGVMYVGWEHGRQLMDSRYAVTNVWGGTAFAHSLAHASLFGSFEVMKDALLFLTGARHEEPLGVAMVGLAGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTSLGFLAWEYGRSQVLRQAGENE 322
            +T PPS      +A D DD   TEAG++RAA+RSSI+IYRSILFGSFPRRVPL++V+K+TDQ STAW+ YS  +GSHKE   + + Q + + KE  G A   KAQ+FG TLR A+P ++KSGFLGTAVFE+YE++KD +D+A+G D D + EA+ ST +    LS    T ++ GGLAG CHG++YVGWEH R+L+++++ V NVW GTA AHSLAHASLFGSFEV+KDALL +T ARHEEPLGV +VG AGGLAGL EE VSHLTPHWE EGV SL+ A +R+G+P+LR IS+ ALPTSLGFLAWEYGR +VLR AGE E
Sbjct:   81 STVPPS------DATDADDRGCTEAGVIRAAVRSSINIYRSILFGSFPRRVPLKTVSKITDQVSTAWDAYSVFKGSHKEATRDIEVQNRPQHKESLGTAGLHKAQLFGQTLRSAVPHMVKSGFLGTAVFEMYETSKDTLDNALGLDKDVDGEASFSTSRDVFSLSMMGITGLISGGLAGTCHGLLYVGWEHARRLINAQHVVANVWTGTALAHSLAHASLFGSFEVLKDALLAITHARHEEPLGVFVVGAAGGLAGLVEETVSHLTPHWEKEGVSSLRAAFKRNGLPRLRVISSAALPTSLGFLAWEYGRHRVLRCAGEEE 395          
The following BLAST results are available for this feature:
BLAST of NO11G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24953.12.600e-10662.62hypothetical protein Naga_100148g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02770NO11G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02770.1NO11G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02770.1.cds1NO11G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02770.1 ID=NO11G02770.1|Name=NO11G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGCCGTCCGTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGA
GGAGGCGTACGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAG
CCGCCATTCGGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGC
TTTCCCCGCCGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGC
GTCGACGGCATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAG
TCGTTACGGAGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGA
GGGGCCGTTTGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGC
GCTACCACCCTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAAT
TGTACGAATCAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCG
GACGGTGAGGCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCT
GTCGTCGACGGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGG
TGATGTATGTGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATAT
GCTGTGACGAATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCA
TGCGTCATTGTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCT
TGACGGGGGCGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTT
GCCGGTGGGTTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCC
GCATTGGGAAGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGC
ATGGTATGCCTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGC
TTGGGGTTTTTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGC
GGGGGAGAACGAAGAGGAAGGCTGA
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protein sequence of NO11G02770.1

>NO11G02770.1-protein ID=NO11G02770.1-protein|Name=NO11G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPSVPATAPPSTSKAQEEAYDDDGALTEAGLVRAAIRSSISIYRSILFGS
FPRRVPLRSVAKVTDQASTAWETYSFLRGSHKEVVTESKQLQQKQKEGHG
GAVWRKAQVFGHTLRGALPPLIKSGFLGTAVFELYESTKDMMDDAIGFDP
DGEAEAATSTWKGTIFLSSTAVVCGGLAGACHGVMYVGWEHGRQLMDSRY
AVTNVWGGTAFAHSLAHASLFGSFEVMKDALLFLTGARHEEPLGVAMVGL
AGGLAGLCEEAVSHLTPHWEVEGVGSLKVAIRRHGMPQLRAISAGALPTS
LGFLAWEYGRSQVLRQAGENEEEG*
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mRNA from alignment at chr11:870141..871115+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02770.1 ID=NO11G02770.1|Name=NO11G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at chr11:870141..871115+ (Nannochloropsis oceanica)
ATGCCGTCCGTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGA GGAGGCGTACGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAG CCGCCATTCGGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGC TTTCCCCGCCGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGC GTCGACGGCATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAG TCGTTACGGAGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGA GGGGCCGTTTGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGC GCTACCACCCTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAAT TGTACGAATCAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCG GACGGTGAGGCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCT GTCGTCGACGGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGG TGATGTATGTGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATAT GCTGTGACGAATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCA TGCGTCATTGTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCT TGACGGGGGCGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTT GCCGGTGGGTTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCC GCATTGGGAAGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGC ATGGTATGCCTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGC TTGGGGTTTTTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGC GGGGGAGAACGAAGAGGAAGGCTGA
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Coding sequence (CDS) from alignment at chr11:870141..871115+

>NO11G02770.1 ID=NO11G02770.1|Name=NO11G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr11:870141..871115+ (Nannochloropsis oceanica)
ATGCCGTCCGTGCCCGCAACAGCCCCACCATCAACGTCCAAGGCTCAGGA
GGAGGCGTACGACGATGATGGCGCGCTCACCGAGGCGGGGCTCGTACGAG
CCGCCATTCGGAGCAGCATCAGCATCTATCGAAGTATCTTGTTCGGGAGC
TTTCCCCGCCGCGTGCCGCTCAGATCGGTGGCCAAAGTCACAGATCAAGC
GTCGACGGCATGGGAGACATACTCATTTCTCAGGGGCTCGCACAAAGAAG
TCGTTACGGAGAGTAAGCAGCTGCAGCAAAAGCAGAAGGAAGGTCATGGA
GGGGCCGTTTGGCGCAAGGCCCAAGTCTTTGGACACACACTGCGAGGGGC
GCTACCACCCTTGATCAAGAGTGGGTTTCTTGGAACTGCCGTCTTTGAAT
TGTACGAATCAACCAAGGACATGATGGATGATGCAATAGGTTTTGATCCG
GACGGTGAGGCTGAGGCAGCGACGAGCACGTGGAAGGGCACGATTTTTCT
GTCGTCGACGGCGGTGGTGTGTGGAGGGCTAGCAGGGGCGTGTCATGGGG
TGATGTATGTGGGATGGGAGCATGGACGACAGTTGATGGACTCACGATAT
GCTGTGACGAATGTGTGGGGAGGTACTGCCTTTGCACACTCCCTTGCGCA
TGCGTCATTGTTCGGTTCATTTGAGGTTATGAAGGATGCTCTCCTTTTCT
TGACGGGGGCGCGGCATGAGGAACCGCTGGGGGTAGCCATGGTGGGGCTT
GCCGGTGGGTTGGCTGGGCTGTGTGAAGAGGCAGTGTCACATTTGACCCC
GCATTGGGAAGTTGAGGGAGTGGGGAGTTTGAAGGTGGCGATCCGACGGC
ATGGTATGCCTCAATTACGCGCCATTTCCGCAGGGGCCCTTCCGACGAGC
TTGGGGTTTTTGGCGTGGGAGTATGGACGGAGCCAGGTGTTGAGACAGGC
GGGGGAGAACGAAGAGGAAGGCTGA
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Synonyms
Publications