NO11G01120, NO11G01120 (gene) Nannochloropsis oceanica

Overview
NameNO11G01120
Unique NameNO11G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2960
Alignment locationchr11:406988..409947 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:406988..409947 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01120 vs. NCBI_GenBank
Match: EWM25094.1 (hypothetical protein Naga_100016g27 [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 3.200e-86
Identity = 228/473 (48.20%), Postives = 268/473 (56.66%), Query Frame = 0 
Query:    1 MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSSVLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQT-SRLKRALHRVENARATCSSITPPASHSECNXXXXXXXXXXXXXXXXXXXXXXXPLNYQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDELADXXXXXXXXXXXXXXXXXXXXXXXDVRLARPTPTAPGHTMEPVTMPSLGGLFLHESGSESN-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAXXXXXXXXXXXXXXAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVVXXXXXXXXXXWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTAPAMLEESGWDWYVDV 466
            M++ V LARVSLRDNLLCVCD++GVIVFASDDLLWALGL GPT RHIG+S+ DLL DED  EYKN++RRKSGSLLRC+QNGCFVWLDIQ       +LKRAL RV+ ARA  +        +  +                       PLN+Q KALA+AS  CA  AG + GLEE+V+TK++TLD FL       G +E +                         +   R  P A    + P  +PS G L L +  ++          XXXXXXXXXXXXX                        VREYSFREIFEY SAGAK MS +TSFS  GSR  S LN G +              AA L +P    RDSRPFSERVAAKCRAAPEES+ +S+                 W LQNKYKVSGY+GKAAATLGLGTV S+ V A+  +L   P ML+ESGWDWYVDV
Sbjct:    8 MNSNVLLARVSLRDNLLCVCDLKGVIVFASDDLLWALGLQGPTTRHIGASLFDLLADEDVEEYKNSLRRKSGSLLRCKQNGCFVWLDIQCVSHVPPQLKRALSRVQKARA--AGFPSLVCLNNNSISENVNLIADINRAVAPHAMNNSPLNHQSKALASAS--CAWAAGNVVGLEENVLTKDRTLDSFL----TPAGQEEESATRPADKAVGEEDAVTEASDPEEEGIYATRAEPQASVGAINP-CLPSFGCLTLEDGANQGQRATRSLCTXXXXXXXXXXXXXQLGDGLALWTDEEQLRQQQEEAAMVREYSFREIFEYLSAGAKSMSHATSFSLSGSRASSTLNMGPS-----TAAASPSSPAAVLAQPC---RDSRPFSERVAAKCRAAPEESFLSSH---------GLASGSSSWRLQNKYKVSGYMGKAAATLGLGTVKSAAVGAS--ALRHVPPMLDESGWDWYVDV 452
The following BLAST results are available for this feature:
BLAST of NO11G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25094.13.200e-8648.20hypothetical protein Naga_100016g27 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002158NSK002158Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01120.1NO11G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671175gene_4991Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g27gene5392Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01120.1NO11G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01120 ID=NO11G01120|Name=NO11G01120|organism=Nannochloropsis oceanica|type=gene|length=2960bp
GTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTGCGGATGCGCGC
TAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCAATCACTGCCCT
GGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCATGACCGCGCTCG
CACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAAGAGAAGCCAGA
ACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCCCTTGCGCTTTC
GGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTCTTGGCTATTGA
AATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAGTCCATGCTCCT
TGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTGACACTTGACAC
TAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTTGACACGCGCCC
GGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACGGGTCTTCATAC
ATCCTCACCAGCACTCAACAGCATGCATAATACGGTGACCCTGGCTCGCG
TGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGCGCGGAGTGATT
GTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGAC
CATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGACCGACGAGGACA
AACTTGAGTACAAGgtatgtctgggtatgaggggaaagtaggggagtaag
gcggcggggaatttgcagtgcgacacatgtatcgacccgcttcttttcga
ccactttgttctgggtctgggatctgctgcacacatctcataactccctt
ccactcgtattcacccacagAACGCCATGAGAAGGAAATCGGGCTCGCTT
TTGCGATGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAGTCAAC
GGGCCAGACCAGCCGGCTCAAGAGAGCATTGCACCGCGTGGAAAATGCAC
GGGCCACCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGTGCAAT
AACAACCACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAATACCAG
CGGCACCAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTTGGCTA
CTGCCTCGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTTTGGAG
GAGCATGTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTACACCCG
GGAGCAAGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGATGACG
ACGGCGACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACGAGGGA
GACGATGTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCATACGAT
GGAACCCGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGAGAGTG
GGAGTGAAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCTCCTCG
GAGCAGCTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAGCAGCA
ACGCCAGCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTTTAGAG
AAATTTTTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGTCCACC
AGCTTCAGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTCGGGTC
GGCAGCAGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCCTGCCG
CTGGCTTGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCTTCAGT
GAGCGGGTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTACAGCGC
CAGCAACTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGCTTCTT
CCTCGTCATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATGTGGGC
AAGGCAGCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACGGTGTC
GGCTGCGTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGAGAGCG
GGTGGGATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGAGAGAG
AGAGAGTGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGCGACGT
GCCACCCGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGCATGTC
GGACAAAGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAGTAAAG
GGACACAGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAATTTACA
GTGATCGAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAATGCGG
CTTCCGCATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGTGTGAT
ATGTGCATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGAGAGGA
GGGCCAGAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAAAGGTA
GGACAAGCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCACGCGGA
TTTTGTGGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGATTTCCC
CCCTGGAAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAACCACAC
GTACAATAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAACAAGCT
TGTCCCGTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGAGAAAC
ATGGTTCATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTTTCTCA
GGCGGAACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTAGCAGG
ACTTGTGGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCAAAACA
GCTATCAACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAACAGCAC
GATACAAAAA
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protein sequence of NO11G01120.1

>NO11G01120.1-protein ID=NO11G01120.1-protein|Name=NO11G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSS
VLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTSRLKRA
LHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLN
YQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDEL
ADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLG
GLFLHESGSESNSACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAM
VREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAA
VAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVV
SSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTA
PAMLEESGWDWYVDV*
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Synonyms
Publications